Wall clock time and date at job start Mon Mar 30 2020 06:59:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86806 * 119.99931 * 2 1 4 4 H 1.48498 * 109.46977 * 239.99697 * 3 2 1 5 5 H 1.48493 * 109.47083 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47099 * 119.99835 * 3 2 1 7 7 C 1.37874 * 120.00123 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00072 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99983 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47262 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47070 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47070 * 179.97438 * 11 10 9 13 13 N 1.46502 * 109.47350 * 179.97438 * 12 11 10 14 14 C 1.36746 * 125.07550 * 99.17946 * 13 12 11 15 15 C 1.34273 * 109.89976 * 179.85677 * 14 13 12 16 16 C 1.46476 * 107.01409 * 0.40035 * 15 14 13 17 17 C 1.39829 * 133.97717 * 179.76094 * 16 15 14 18 18 C 1.36599 * 119.90395 * 179.97438 * 17 16 15 19 19 C 1.38790 * 120.58778 * 0.02562 * 18 17 16 20 20 C 1.38374 * 120.57600 * 359.97438 * 19 18 17 21 21 N 1.39834 * 120.17329 * 180.02562 * 20 19 18 22 22 C 1.37837 * 125.08309 * 279.48856 * 13 12 11 23 23 H 0.96996 * 119.99743 * 0.02562 * 1 2 3 24 24 H 1.08996 * 109.47078 * 59.99063 * 9 7 2 25 25 H 1.09003 * 109.46647 * 299.99326 * 9 7 2 26 26 H 1.09005 * 109.46955 * 59.99394 * 10 9 7 27 27 H 1.08993 * 109.46766 * 299.99830 * 10 9 7 28 28 H 1.09003 * 109.47004 * 300.00035 * 11 10 9 29 29 H 1.08995 * 109.47367 * 60.00171 * 11 10 9 30 30 H 1.09003 * 109.47236 * 299.99893 * 12 11 10 31 31 H 1.09005 * 109.47411 * 59.99990 * 12 11 10 32 32 H 1.07998 * 125.05662 * 0.02562 * 14 13 12 33 33 H 1.08000 * 126.49491 * 180.15929 * 15 14 13 34 34 H 1.07995 * 120.04871 * 359.97271 * 17 16 15 35 35 H 1.08000 * 119.70498 * 180.02562 * 18 17 16 36 36 H 1.07996 * 119.71384 * 179.97438 * 19 18 17 37 37 H 0.96997 * 120.00376 * 187.23645 * 21 20 19 38 38 H 0.97001 * 120.00019 * 7.24336 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4803 -4.9871 0.0012 12 6 2.4745 -6.1500 0.0005 13 7 1.7421 -7.4187 0.0018 14 6 1.5026 -8.1890 -1.1025 15 6 0.8092 -9.2847 -0.7539 16 6 0.5785 -9.2044 0.6904 17 6 -0.0729 -10.0246 1.6167 18 6 -0.1166 -9.6639 2.9334 19 6 0.4805 -8.4871 3.3635 20 6 1.1310 -7.6590 2.4659 21 7 1.7301 -6.4756 2.9085 22 6 1.1861 -8.0115 1.1151 23 1 -0.4849 0.8400 -0.0004 24 1 0.6247 -2.5570 -0.8896 25 1 0.6242 -2.5567 0.8904 26 1 2.8721 -3.6042 0.8905 27 1 2.8719 -3.6043 -0.8894 28 1 0.8539 -5.0445 0.8914 29 1 0.8534 -5.0451 -0.8885 30 1 3.1006 -6.0923 -0.8899 31 1 3.1019 -6.0922 0.8901 32 1 1.8257 -7.9527 -2.1055 33 1 0.4802 -10.0736 -1.4139 34 1 -0.5409 -10.9420 1.2915 35 1 -0.6203 -10.3001 3.6462 36 1 0.4370 -8.2154 4.4078 37 1 2.0931 -5.8460 2.2661 38 1 1.7829 -6.2843 3.8580 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385401465.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:26 Heat of formation + Delta-G solvation = 24.153843 kcal Electronic energy + Delta-G solvation = -18423.785902 eV Core-core repulsion = 15650.927282 eV Total energy + Delta-G solvation = -2772.858620 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.24190 -38.27022 -37.17130 -35.62583 -34.42155 -32.44167 -30.24130 -29.84439 -28.70062 -26.44413 -23.97304 -23.18390 -22.59015 -21.90489 -20.85323 -18.48400 -18.19708 -17.67118 -17.42252 -16.53514 -16.34426 -15.99751 -15.84339 -15.33099 -14.65399 -14.54184 -14.08073 -13.89020 -13.72064 -13.53976 -13.35555 -12.85999 -12.77922 -12.48712 -12.39629 -12.32361 -12.18247 -11.99647 -11.59594 -11.46668 -11.36389 -11.12465 -10.57666 -9.63911 -9.05405 -8.22212 -7.86005 -6.34122 0.45294 0.81764 1.39044 1.41778 1.49817 1.88579 1.96952 2.39295 2.98170 3.11294 3.12602 3.67977 3.79124 3.93004 4.05320 4.18831 4.26464 4.31331 4.53696 4.59712 4.68065 4.73476 4.82905 4.95239 5.02082 5.06198 5.17560 5.19823 5.23364 5.48562 5.49921 5.69539 5.80716 5.82825 5.94898 6.02818 6.20727 6.24908 6.47327 6.63797 6.83907 6.90128 7.36007 8.89563 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.032702 B = 0.003901 C = 0.003691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.007220 B = 7176.296316 C = 7584.530772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.002 4.002 3 Si 0.965 3.035 4 H -0.265 1.265 5 H -0.286 1.286 6 H -0.265 1.265 7 C -0.544 4.544 8 H 0.065 0.935 9 C 0.023 3.977 10 C -0.093 4.093 11 C -0.125 4.125 12 C 0.110 3.890 13 N -0.481 5.481 14 C 0.054 3.946 15 C -0.232 4.232 16 C -0.093 4.093 17 C -0.150 4.150 18 C -0.099 4.099 19 C -0.214 4.214 20 C 0.203 3.797 21 N -0.885 5.885 22 C 0.005 3.995 23 H 0.263 0.737 24 H -0.013 1.013 25 H -0.015 1.015 26 H 0.061 0.939 27 H 0.064 0.936 28 H 0.048 0.952 29 H 0.056 0.944 30 H 0.118 0.882 31 H 0.087 0.913 32 H 0.196 0.804 33 H 0.164 0.836 34 H 0.133 0.867 35 H 0.143 0.857 36 H 0.136 0.864 37 H 0.395 0.605 38 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.475 -18.768 2.333 19.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.200 4.200 3 Si 0.789 3.211 4 H -0.190 1.190 5 H -0.211 1.211 6 H -0.190 1.190 7 C -0.582 4.582 8 H 0.083 0.917 9 C -0.014 4.014 10 C -0.132 4.132 11 C -0.164 4.164 12 C -0.011 4.011 13 N -0.163 5.163 14 C -0.072 4.072 15 C -0.257 4.257 16 C -0.098 4.098 17 C -0.170 4.170 18 C -0.118 4.118 19 C -0.239 4.239 20 C 0.098 3.902 21 N -0.429 5.429 22 C -0.102 4.102 23 H 0.072 0.928 24 H 0.005 0.995 25 H 0.004 0.996 26 H 0.080 0.920 27 H 0.083 0.917 28 H 0.067 0.933 29 H 0.075 0.925 30 H 0.136 0.864 31 H 0.105 0.895 32 H 0.213 0.787 33 H 0.182 0.818 34 H 0.151 0.849 35 H 0.161 0.839 36 H 0.154 0.846 37 H 0.226 0.774 38 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 4.517 -18.377 2.299 19.063 hybrid contribution 0.045 1.546 0.134 1.552 sum 4.562 -16.831 2.434 17.607 Atomic orbital electron populations 1.70107 1.07969 1.27833 1.51682 1.26021 0.95715 1.03534 0.94724 0.85498 0.78245 0.78003 0.79305 1.18990 1.21109 1.19020 1.21704 0.93720 0.92240 1.50524 0.91666 1.19000 0.94491 0.93451 0.94453 1.21376 0.97902 0.92213 1.01666 1.21955 0.98350 0.94303 1.01752 1.22006 0.93757 0.80002 1.05370 1.44115 1.47013 1.19447 1.05722 1.22389 1.00700 0.91890 0.92247 1.21936 1.09005 1.01742 0.92986 1.19488 1.00903 0.94578 0.94879 1.20294 1.03424 1.00756 0.92574 1.20642 0.99196 0.96216 0.95765 1.20502 1.06469 0.97895 0.99081 1.17167 0.95181 0.88522 0.89325 1.42828 1.68058 1.21095 1.10887 1.18224 1.06353 0.97367 0.88242 0.92835 0.99498 0.99616 0.92036 0.91682 0.93346 0.92520 0.86422 0.89455 0.78729 0.81802 0.84914 0.83890 0.84615 0.77390 0.76492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.23 13.29 21.45 0.28 -56.95 16 2 C 0.00 -0.13 5.46 84.65 0.46 0.33 16 3 Si 0.97 43.65 29.54 68.60 2.03 45.68 16 4 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 5 H -0.29 -12.75 7.11 99.48 0.71 -12.05 16 6 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 7 C -0.54 -30.35 9.11 25.60 0.23 -30.12 16 8 H 0.07 3.41 7.74 -2.91 -0.02 3.39 16 9 C 0.02 1.20 4.97 29.85 0.15 1.35 16 10 C -0.09 -3.49 5.15 30.59 0.16 -3.33 16 11 C -0.13 -4.00 5.03 30.59 0.15 -3.84 16 12 C 0.11 2.72 5.29 86.38 0.46 3.18 16 13 N -0.48 -12.95 2.79 -515.50 -1.44 -14.39 16 14 C 0.05 1.27 11.26 83.02 0.94 2.20 16 15 C -0.23 -5.64 11.08 23.51 0.26 -5.38 16 16 C -0.09 -2.65 6.37 -20.21 -0.13 -2.78 16 17 C -0.15 -3.76 10.05 22.27 0.22 -3.54 16 18 C -0.10 -2.30 9.97 22.02 0.22 -2.08 16 19 C -0.21 -5.40 9.87 22.43 0.22 -5.18 16 20 C 0.20 5.79 6.77 38.25 0.26 6.05 16 21 N -0.88 -22.41 8.92 -51.10 -0.46 -22.86 16 22 C 0.01 0.16 6.81 39.09 0.27 0.43 16 23 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 24 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 25 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 26 H 0.06 2.14 8.14 -2.38 -0.02 2.12 16 27 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 28 H 0.05 1.71 7.16 -2.39 -0.02 1.69 16 29 H 0.06 1.92 8.14 -2.39 -0.02 1.91 16 30 H 0.12 2.32 8.10 -2.39 -0.02 2.30 16 31 H 0.09 2.03 6.40 -2.38 -0.02 2.02 16 32 H 0.20 3.10 8.06 -2.91 -0.02 3.07 16 33 H 0.16 3.08 8.06 -2.91 -0.02 3.05 16 34 H 0.13 2.68 8.06 -2.91 -0.02 2.66 16 35 H 0.14 2.44 8.06 -2.91 -0.02 2.42 16 36 H 0.14 2.81 8.06 -2.91 -0.02 2.78 16 37 H 0.39 10.33 4.30 -92.71 -0.40 9.93 16 38 H 0.41 8.42 8.85 -92.71 -0.82 7.60 16 Total: -1.00 -68.91 314.93 4.13 -64.78 By element: Atomic # 1 Polarization: 26.62 SS G_CDS: -0.16 Total: 26.46 kcal Atomic # 6 Polarization: -46.59 SS G_CDS: 3.87 Total: -42.72 kcal Atomic # 7 Polarization: -92.59 SS G_CDS: -1.61 Total: -94.20 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Total: -68.91 4.13 -64.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385401465.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.935 kcal (2) G-P(sol) polarization free energy of solvation -68.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.781 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds