Wall clock time and date at job start Mon Mar 30 2020 07:12:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38253 * 119.89114 * 2 1 4 4 C 1.37964 * 120.23566 * 180.27370 * 3 2 1 5 5 C 1.39676 * 119.99701 * 359.73436 * 4 3 2 6 6 C 1.43206 * 120.11492 * 179.97438 * 5 4 3 7 7 N 4.80224 * 137.06314 * 0.30577 * 3 1 2 8 8 C 1.39498 * 119.77423 * 359.97438 * 5 4 3 9 9 C 1.38664 * 119.76523 * 0.02562 * 8 5 4 10 10 N 1.39705 * 120.00234 * 179.97438 * 9 8 5 11 11 C 1.46499 * 119.99839 * 0.02562 * 10 9 8 12 12 C 1.53002 * 109.47341 * 179.97438 * 11 10 9 13 13 C 1.53005 * 109.47351 * 179.97438 * 12 11 10 14 14 C 1.52994 * 109.46910 * 179.97438 * 13 12 11 15 15 C 1.50700 * 109.46890 * 180.02562 * 14 13 12 16 16 H 1.07999 * 119.99988 * 359.97438 * 15 14 13 17 17 C 1.37875 * 120.00042 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99907 * 180.02562 * 17 15 14 19 19 Si 1.86794 * 120.00189 * 359.97438 * 17 15 14 20 20 H 1.48498 * 109.46870 * 90.00088 * 19 17 15 21 21 H 1.48498 * 109.47634 * 210.00073 * 19 17 15 22 22 H 1.48501 * 109.47085 * 330.00309 * 19 17 15 23 23 H 1.08998 * 109.47453 * 270.27510 * 1 2 3 24 24 H 1.09005 * 109.47125 * 30.27336 * 1 2 3 25 25 H 1.09001 * 109.47761 * 150.26964 * 1 2 3 26 26 H 1.07999 * 119.87778 * 359.97438 * 3 2 1 27 27 H 1.08003 * 119.99940 * 179.70239 * 4 3 2 28 28 H 1.07994 * 120.12093 * 180.02562 * 8 5 4 29 29 H 0.97000 * 120.00662 * 179.72490 * 10 9 8 30 30 H 1.09005 * 109.47136 * 299.99934 * 11 10 9 31 31 H 1.09002 * 109.47352 * 59.99966 * 11 10 9 32 32 H 1.08992 * 109.47234 * 299.99943 * 12 11 10 33 33 H 1.09002 * 109.46787 * 59.99789 * 12 11 10 34 34 H 1.08992 * 109.47085 * 300.00254 * 13 12 11 35 35 H 1.08999 * 109.46457 * 60.00075 * 13 12 11 36 36 H 1.09000 * 109.47301 * 299.99746 * 14 13 12 37 37 H 1.08999 * 109.47498 * 60.00714 * 14 13 12 38 38 H 0.97000 * 120.00242 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1959 1.1986 0.0000 4 6 3.5755 1.2069 -0.0057 5 6 4.2811 0.0015 -0.0059 6 6 5.7132 0.0071 -0.0123 7 7 6.8492 0.0117 -0.0175 8 6 3.5861 -1.2080 0.0003 9 6 2.1995 -1.2051 0.0059 10 7 1.4984 -2.4135 0.0116 11 6 2.2283 -3.6838 0.0120 12 6 1.2317 -4.8447 0.0192 13 6 1.9939 -6.1713 0.0190 14 6 0.9973 -7.3321 0.0269 15 6 1.7481 -8.6388 0.0274 16 1 2.8280 -8.6410 0.0221 17 6 1.0562 -9.8313 0.0334 18 7 1.7115 -10.9717 0.0343 19 14 -0.8117 -9.8275 0.0418 20 1 -1.3129 -9.8300 -1.3560 21 1 -1.3061 -11.0372 0.7471 22 1 -1.3011 -8.6122 0.7410 23 1 -0.3634 0.0049 1.0276 24 1 -0.3633 0.8876 -0.5181 25 1 -0.3635 -0.8924 -0.5096 26 1 1.6522 2.1317 -0.0004 27 1 4.1099 2.1455 -0.0105 28 1 4.1260 -2.1433 0.0006 29 1 0.5284 -2.4116 0.0196 30 1 2.8515 -3.7450 -0.8802 31 1 2.8581 -3.7407 0.8998 32 1 0.6088 -4.7833 0.9115 33 1 0.6015 -4.7880 -0.8683 34 1 2.6165 -6.2325 -0.8735 35 1 2.6244 -6.2281 0.9064 36 1 0.3751 -7.2707 0.9198 37 1 0.3665 -7.2755 -0.8602 38 1 1.2248 -11.8107 0.0390 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385787814.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:12:59 Heat of formation + Delta-G solvation = 30.236516 kcal Electronic energy + Delta-G solvation = -17501.710097 eV Core-core repulsion = 14729.115241 eV Total energy + Delta-G solvation = -2772.594855 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.09575 -37.13642 -36.27033 -34.38235 -33.10923 -32.27047 -30.23619 -28.43897 -27.55156 -25.06088 -22.83692 -22.21932 -21.23605 -20.25445 -19.09259 -16.76292 -16.52703 -15.70910 -15.59437 -15.52022 -14.54538 -14.44711 -14.17906 -14.07398 -13.74209 -13.29873 -13.21297 -13.08609 -12.71477 -12.46376 -12.14745 -12.10659 -11.94436 -11.62544 -11.44438 -11.36529 -10.90695 -10.80923 -10.18136 -9.97019 -9.78368 -9.62947 -9.21859 -9.03219 -8.56916 -7.59603 -6.07047 -4.05417 0.58777 1.30016 2.49520 2.79582 3.26025 3.27539 3.35193 3.37825 3.71431 3.73988 4.42054 4.54628 4.65831 4.84218 4.96204 5.10287 5.18394 5.27334 5.29095 5.33531 5.36277 5.47414 5.58865 5.74396 5.89494 5.89565 5.91769 6.12920 6.15148 6.20627 6.48743 6.49521 6.58719 6.83140 7.11184 7.24700 7.30899 7.37864 7.54345 7.76454 8.50939 8.98039 9.55278 11.06527 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.027308 B = 0.003292 C = 0.002949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.094067 B = 8502.713877 C = 9491.450994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.138 4.138 3 C -0.075 4.075 4 C -0.132 4.132 5 C 0.012 3.988 6 C 0.258 3.742 7 N -0.423 5.423 8 C -0.149 4.149 9 C 0.222 3.778 10 N -0.741 5.741 11 C 0.118 3.882 12 C -0.132 4.132 13 C -0.100 4.100 14 C -0.013 4.013 15 C -0.522 4.522 16 H 0.071 0.929 17 C 0.065 3.935 18 N -0.904 5.904 19 Si 0.881 3.119 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.266 1.266 23 H 0.070 0.930 24 H 0.069 0.931 25 H 0.063 0.937 26 H 0.130 0.870 27 H 0.126 0.874 28 H 0.133 0.867 29 H 0.402 0.598 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.015 0.985 37 H 0.010 0.990 38 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.742 25.350 -0.009 25.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.143 4.143 3 C -0.094 4.094 4 C -0.155 4.155 5 C 0.008 3.992 6 C -0.057 4.057 7 N -0.098 5.098 8 C -0.174 4.174 9 C 0.116 3.884 10 N -0.370 5.370 11 C -0.006 4.006 12 C -0.169 4.169 13 C -0.138 4.138 14 C -0.051 4.051 15 C -0.560 4.560 16 H 0.089 0.911 17 C -0.136 4.136 18 N -0.543 5.543 19 Si 0.709 3.291 20 H -0.203 1.203 21 H -0.214 1.214 22 H -0.191 1.191 23 H 0.089 0.911 24 H 0.088 0.912 25 H 0.082 0.918 26 H 0.148 0.852 27 H 0.144 0.856 28 H 0.150 0.850 29 H 0.238 0.762 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.033 0.967 37 H 0.029 0.971 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.885 24.948 -0.017 25.019 hybrid contribution -1.699 -0.286 -0.013 1.723 sum -3.584 24.661 -0.030 24.920 Atomic orbital electron populations 1.20679 0.90968 1.02786 1.02366 1.19609 0.96164 0.91641 1.06931 1.20666 0.93278 0.97103 0.98307 1.20827 0.94087 0.96218 1.04322 1.15677 0.83846 0.94470 1.05229 1.25803 0.92766 0.93500 0.93633 1.81249 1.12157 1.07569 1.08828 1.20622 0.92318 0.97344 1.07158 1.17454 0.90671 0.86222 0.94025 1.44993 1.08500 1.02582 1.80936 1.21583 0.95548 0.82139 1.01325 1.21887 0.98233 0.94665 1.02158 1.21389 0.98752 0.92222 1.01445 1.19564 0.95195 0.94146 0.96174 1.21164 0.95107 0.88957 1.50801 0.91050 1.25055 0.98432 0.95541 0.94585 1.69918 1.35792 0.97445 1.51131 0.86755 0.86276 0.77635 0.78455 1.20325 1.21403 1.19058 0.91112 0.91155 0.91829 0.85236 0.85565 0.84950 0.76184 0.91983 0.91994 0.91802 0.91821 0.92526 0.92503 0.96683 0.97122 0.92723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.67 9.56 36.00 0.34 -0.32 16 2 C -0.14 -1.11 5.90 -104.34 -0.62 -1.72 16 3 C -0.07 -0.53 9.67 -39.68 -0.38 -0.91 16 4 C -0.13 -1.03 9.75 -39.15 -0.38 -1.41 16 5 C 0.01 0.11 5.73 -106.96 -0.61 -0.50 16 6 C 0.26 2.97 15.33 -22.47 -0.34 2.62 16 7 N -0.42 -5.80 18.54 41.84 0.78 -5.03 16 8 C -0.15 -1.50 9.01 -38.95 -0.35 -1.85 16 9 C 0.22 2.13 6.63 -83.83 -0.56 1.58 16 10 N -0.74 -7.20 5.63 -58.67 -0.33 -7.53 16 11 C 0.12 1.33 4.91 -4.04 -0.02 1.31 16 12 C -0.13 -1.78 5.33 -26.73 -0.14 -1.92 16 13 C -0.10 -1.81 5.15 -26.73 -0.14 -1.94 16 14 C -0.01 -0.31 4.04 -27.89 -0.11 -0.42 16 15 C -0.52 -14.72 9.66 -34.44 -0.33 -15.05 16 16 H 0.07 2.16 7.99 -52.49 -0.42 1.75 16 17 C 0.06 1.88 5.47 -17.82 -0.10 1.78 16 18 N -0.90 -27.83 13.96 55.43 0.77 -27.05 16 19 Si 0.88 21.43 27.47 -169.99 -4.67 16.76 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.27 -6.15 6.54 56.52 0.37 -5.78 16 23 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 24 H 0.07 0.33 8.09 -51.93 -0.42 -0.09 16 25 H 0.06 0.38 6.54 -51.93 -0.34 0.04 16 26 H 0.13 0.60 8.06 -52.49 -0.42 0.17 16 27 H 0.13 0.77 8.06 -52.48 -0.42 0.35 16 28 H 0.13 1.34 6.72 -52.49 -0.35 0.99 16 29 H 0.40 3.40 6.45 -40.82 -0.26 3.14 16 30 H 0.06 0.71 7.95 -51.93 -0.41 0.29 16 31 H 0.06 0.70 7.95 -51.93 -0.41 0.29 16 32 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 35 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.01 0.34 7.20 -51.93 -0.37 -0.03 16 37 H 0.01 0.24 7.57 -51.93 -0.39 -0.15 16 38 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 324.07 15.07 4.88 4.88 Total: -1.00 -31.48 324.07 -7.82 -39.30 By element: Atomic # 1 Polarization: 2.94 SS G_CDS: -5.51 Total: -2.57 kcal Atomic # 6 Polarization: -15.02 SS G_CDS: -3.74 Total: -18.76 kcal Atomic # 7 Polarization: -40.83 SS G_CDS: 1.22 Total: -39.61 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.67 Total: 16.76 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -31.48 -7.82 -39.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385787814.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.539 kcal (2) G-P(sol) polarization free energy of solvation -31.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.302 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds