Wall clock time and date at job start Mon Mar 30 2020 07:12:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38253 * 119.89114 * 2 1 4 4 C 1.37964 * 120.23566 * 180.27370 * 3 2 1 5 5 C 1.39676 * 119.99701 * 359.73436 * 4 3 2 6 6 C 1.43206 * 120.11492 * 179.97438 * 5 4 3 7 7 N 4.80224 * 137.06314 * 0.30577 * 3 1 2 8 8 C 1.39498 * 119.77423 * 359.97438 * 5 4 3 9 9 C 1.38664 * 119.76523 * 0.02562 * 8 5 4 10 10 N 1.39705 * 120.00234 * 179.97438 * 9 8 5 11 11 C 1.46499 * 119.99839 * 0.02562 * 10 9 8 12 12 C 1.53002 * 109.47341 * 179.97438 * 11 10 9 13 13 C 1.53005 * 109.47351 * 179.97438 * 12 11 10 14 14 C 1.52994 * 109.46910 * 179.97438 * 13 12 11 15 15 C 1.50700 * 109.46890 * 180.02562 * 14 13 12 16 16 H 1.07999 * 119.99988 * 359.97438 * 15 14 13 17 17 C 1.37875 * 120.00042 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99907 * 180.02562 * 17 15 14 19 19 Si 1.86794 * 120.00189 * 359.97438 * 17 15 14 20 20 H 1.48498 * 109.46870 * 90.00088 * 19 17 15 21 21 H 1.48498 * 109.47634 * 210.00073 * 19 17 15 22 22 H 1.48501 * 109.47085 * 330.00309 * 19 17 15 23 23 H 1.08998 * 109.47453 * 270.27510 * 1 2 3 24 24 H 1.09005 * 109.47125 * 30.27336 * 1 2 3 25 25 H 1.09001 * 109.47761 * 150.26964 * 1 2 3 26 26 H 1.07999 * 119.87778 * 359.97438 * 3 2 1 27 27 H 1.08003 * 119.99940 * 179.70239 * 4 3 2 28 28 H 1.07994 * 120.12093 * 180.02562 * 8 5 4 29 29 H 0.97000 * 120.00662 * 179.72490 * 10 9 8 30 30 H 1.09005 * 109.47136 * 299.99934 * 11 10 9 31 31 H 1.09002 * 109.47352 * 59.99966 * 11 10 9 32 32 H 1.08992 * 109.47234 * 299.99943 * 12 11 10 33 33 H 1.09002 * 109.46787 * 59.99789 * 12 11 10 34 34 H 1.08992 * 109.47085 * 300.00254 * 13 12 11 35 35 H 1.08999 * 109.46457 * 60.00075 * 13 12 11 36 36 H 1.09000 * 109.47301 * 299.99746 * 14 13 12 37 37 H 1.08999 * 109.47498 * 60.00714 * 14 13 12 38 38 H 0.97000 * 120.00242 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1959 1.1986 0.0000 4 6 3.5755 1.2069 -0.0057 5 6 4.2811 0.0015 -0.0059 6 6 5.7132 0.0071 -0.0123 7 7 6.8492 0.0117 -0.0175 8 6 3.5861 -1.2080 0.0003 9 6 2.1995 -1.2051 0.0059 10 7 1.4984 -2.4135 0.0116 11 6 2.2283 -3.6838 0.0120 12 6 1.2317 -4.8447 0.0192 13 6 1.9939 -6.1713 0.0190 14 6 0.9973 -7.3321 0.0269 15 6 1.7481 -8.6388 0.0274 16 1 2.8280 -8.6410 0.0221 17 6 1.0562 -9.8313 0.0334 18 7 1.7115 -10.9717 0.0343 19 14 -0.8117 -9.8275 0.0418 20 1 -1.3129 -9.8300 -1.3560 21 1 -1.3061 -11.0372 0.7471 22 1 -1.3011 -8.6122 0.7410 23 1 -0.3634 0.0049 1.0276 24 1 -0.3633 0.8876 -0.5181 25 1 -0.3635 -0.8924 -0.5096 26 1 1.6522 2.1317 -0.0004 27 1 4.1099 2.1455 -0.0105 28 1 4.1260 -2.1433 0.0006 29 1 0.5284 -2.4116 0.0196 30 1 2.8515 -3.7450 -0.8802 31 1 2.8581 -3.7407 0.8998 32 1 0.6088 -4.7833 0.9115 33 1 0.6015 -4.7880 -0.8683 34 1 2.6165 -6.2325 -0.8735 35 1 2.6244 -6.2281 0.9064 36 1 0.3751 -7.2707 0.9198 37 1 0.3665 -7.2755 -0.8602 38 1 1.2248 -11.8107 0.0390 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385787814.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:12:56 Heat of formation + Delta-G solvation = 12.400581 kcal Electronic energy + Delta-G solvation = -17502.483521 eV Core-core repulsion = 14729.115241 eV Total energy + Delta-G solvation = -2773.368279 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.77286 -38.06104 -37.29320 -35.78403 -34.29041 -33.60239 -31.43444 -29.50578 -28.27575 -26.46671 -23.90727 -23.02080 -22.13820 -21.83995 -19.91750 -18.83135 -17.31468 -16.61588 -16.46210 -16.34489 -16.23194 -15.32506 -15.25714 -14.78205 -14.75130 -14.70300 -14.24233 -14.02713 -13.87794 -13.69473 -13.31163 -13.16915 -13.01948 -12.72863 -12.41631 -12.26461 -12.22000 -11.97594 -11.75250 -11.44047 -11.37098 -11.25774 -10.92681 -10.75822 -9.68391 -8.30215 -8.28986 -6.33626 -0.12343 0.65875 1.36856 1.39216 1.51200 1.59966 1.98969 2.37232 2.49041 2.93453 3.00313 3.06677 3.95098 3.98633 4.10743 4.14050 4.25902 4.36672 4.48466 4.62558 4.64829 4.79929 4.82337 4.85629 4.92119 4.95583 5.13705 5.16945 5.21878 5.23155 5.34769 5.48270 5.57370 5.60233 5.65159 5.68958 5.88030 6.29325 6.34393 6.43840 6.75694 6.88300 7.31407 8.88206 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.027308 B = 0.003292 C = 0.002949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.094067 B = 8502.713877 C = 9491.450994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.131 4.131 3 C -0.072 4.072 4 C -0.122 4.122 5 C -0.006 4.006 6 C 0.279 3.721 7 N -0.471 5.471 8 C -0.162 4.162 9 C 0.206 3.794 10 N -0.739 5.739 11 C 0.128 3.872 12 C -0.117 4.117 13 C -0.096 4.096 14 C -0.012 4.012 15 C -0.536 4.536 16 H 0.027 0.973 17 C -0.002 4.002 18 N -0.956 5.956 19 Si 0.956 3.044 20 H -0.266 1.266 21 H -0.287 1.287 22 H -0.241 1.241 23 H 0.078 0.922 24 H 0.087 0.913 25 H 0.064 0.936 26 H 0.162 0.838 27 H 0.145 0.855 28 H 0.122 0.878 29 H 0.409 0.591 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.048 0.952 35 H 0.048 0.952 36 H 0.022 0.978 37 H 0.020 0.980 38 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.847 28.123 -0.017 28.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.136 4.136 3 C -0.090 4.090 4 C -0.144 4.144 5 C -0.010 4.010 6 C -0.035 4.035 7 N -0.148 5.148 8 C -0.188 4.188 9 C 0.101 3.899 10 N -0.370 5.370 11 C 0.003 3.997 12 C -0.155 4.155 13 C -0.134 4.134 14 C -0.050 4.050 15 C -0.574 4.574 16 H 0.046 0.954 17 C -0.198 4.198 18 N -0.597 5.597 19 Si 0.779 3.221 20 H -0.191 1.191 21 H -0.213 1.213 22 H -0.164 1.164 23 H 0.097 0.903 24 H 0.106 0.894 25 H 0.082 0.918 26 H 0.180 0.820 27 H 0.163 0.837 28 H 0.140 0.860 29 H 0.247 0.753 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.040 0.960 37 H 0.039 0.961 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.987 27.761 -0.026 28.206 hybrid contribution -0.675 -1.117 -0.011 1.305 sum -5.662 26.644 -0.037 27.239 Atomic orbital electron populations 1.20760 0.89283 1.03726 1.03140 1.19953 0.97451 0.91205 1.05039 1.21040 0.92915 0.98081 0.96984 1.21123 0.94703 0.96113 1.02486 1.15764 0.82760 0.95304 1.07148 1.26124 0.93052 0.92103 0.92204 1.81257 1.13515 1.09111 1.10874 1.20615 0.92889 0.97189 1.08083 1.17572 0.90470 0.86763 0.95072 1.44774 1.08717 1.01929 1.81592 1.21302 0.94920 0.82397 1.01066 1.21667 0.98130 0.92600 1.03095 1.21254 0.98021 0.93360 1.00775 1.19542 0.95792 0.92991 0.96641 1.21602 0.93736 0.91875 1.50232 0.95412 1.26133 1.04687 0.94902 0.94121 1.70091 1.38325 0.98393 1.52864 0.85567 0.78739 0.78543 0.79226 1.19110 1.21259 1.16443 0.90308 0.89410 0.91760 0.82025 0.83694 0.85982 0.75287 0.92396 0.92421 0.90864 0.90815 0.93314 0.93333 0.96005 0.96128 0.92562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.92 9.56 71.23 0.68 -0.24 16 2 C -0.13 -1.68 5.90 -19.68 -0.12 -1.80 16 3 C -0.07 -0.74 9.67 22.21 0.21 -0.53 16 4 C -0.12 -1.59 9.75 22.55 0.22 -1.37 16 5 C -0.01 -0.11 5.73 -21.38 -0.12 -0.23 16 6 C 0.28 6.44 15.33 88.33 1.35 7.79 16 7 N -0.47 -13.25 18.54 19.01 0.35 -12.89 16 8 C -0.16 -3.16 9.01 22.68 0.20 -2.96 16 9 C 0.21 3.57 6.63 38.17 0.25 3.82 16 10 N -0.74 -12.86 5.63 -339.52 -1.91 -14.77 16 11 C 0.13 2.73 4.91 86.38 0.42 3.16 16 12 C -0.12 -2.93 5.33 30.60 0.16 -2.77 16 13 C -0.10 -3.43 5.15 30.59 0.16 -3.27 16 14 C -0.01 -0.55 4.04 29.85 0.12 -0.43 16 15 C -0.54 -30.96 9.66 25.60 0.25 -30.71 16 16 H 0.03 1.77 7.99 -2.91 -0.02 1.75 16 17 C 0.00 -0.14 5.47 84.65 0.46 0.33 16 18 N -0.96 -60.57 13.96 21.45 0.30 -60.27 16 19 Si 0.96 43.63 27.47 68.60 1.88 45.52 16 20 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 21 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 22 H -0.24 -9.96 6.54 99.48 0.65 -9.31 16 23 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 24 H 0.09 0.44 8.09 -2.38 -0.02 0.42 16 25 H 0.06 0.54 6.54 -2.39 -0.02 0.53 16 26 H 0.16 0.66 8.06 -2.91 -0.02 0.64 16 27 H 0.15 1.33 8.06 -2.91 -0.02 1.30 16 28 H 0.12 2.54 6.72 -2.91 -0.02 2.52 16 29 H 0.41 5.78 6.45 -92.71 -0.60 5.18 16 30 H 0.06 1.29 7.95 -2.38 -0.02 1.27 16 31 H 0.06 1.28 7.95 -2.39 -0.02 1.26 16 32 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.05 1.78 8.14 -2.39 -0.02 1.77 16 36 H 0.02 0.95 7.20 -2.39 -0.02 0.93 16 37 H 0.02 0.88 7.57 -2.39 -0.02 0.86 16 38 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 Total: -1.00 -70.30 324.07 5.29 -65.01 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: 0.40 Total: 6.62 kcal Atomic # 6 Polarization: -33.47 SS G_CDS: 4.26 Total: -29.21 kcal Atomic # 7 Polarization: -86.68 SS G_CDS: -1.26 Total: -87.94 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 1.88 Total: 45.52 kcal Total: -70.30 5.29 -65.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385787814.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.413 kcal (2) G-P(sol) polarization free energy of solvation -70.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds