Wall clock time and date at job start Mon Mar 30 2020 07:00:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 120.00260 * 2 1 4 4 H 1.48500 * 109.47285 * 240.00043 * 3 2 1 5 5 H 1.48500 * 109.47029 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46775 * 119.99986 * 3 2 1 7 7 C 1.37882 * 119.99790 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00154 * 163.61426 * 7 2 1 9 9 C 1.50701 * 119.99625 * 343.61250 * 7 2 1 10 10 C 1.53003 * 115.55132 * 324.24242 * 9 7 2 11 11 N 1.46895 * 109.47160 * 292.67226 * 10 9 7 12 12 C 1.46556 * 110.99923 * 39.85352 * 11 10 9 13 13 C 1.53493 * 109.11865 * 178.98243 * 12 11 10 14 14 N 1.47276 * 107.24295 * 298.32597 * 13 12 11 15 15 C 1.40473 * 117.64428 * 41.17802 * 14 13 12 16 16 C 1.38642 * 119.47594 * 168.49992 * 15 14 13 17 17 C 1.38270 * 120.00542 * 179.44660 * 16 15 14 18 18 C 1.38255 * 119.97877 * 359.97438 * 17 16 15 19 19 C 1.38117 * 120.29824 * 0.12231 * 18 17 16 20 20 C 1.39090 * 120.22060 * 0.02562 * 19 18 17 21 21 C 1.53001 * 117.49866 * 109.91870 * 9 7 2 22 22 C 1.53005 * 117.49313 * 178.57797 * 9 7 2 23 23 H 0.97000 * 119.99590 * 5.03632 * 1 2 3 24 24 H 1.08997 * 109.46732 * 172.66810 * 10 9 7 25 25 H 1.08996 * 109.46721 * 52.67551 * 10 9 7 26 26 H 1.08997 * 109.52548 * 298.86925 * 12 11 10 27 27 H 1.08997 * 109.53370 * 59.01541 * 12 11 10 28 28 H 1.09004 * 109.90218 * 57.75899 * 13 12 11 29 29 H 1.08996 * 109.90331 * 178.81144 * 13 12 11 30 30 H 0.96994 * 121.17891 * 221.16164 * 14 13 12 31 31 H 1.08005 * 119.99812 * 359.43620 * 16 15 14 32 32 H 1.08007 * 120.01204 * 179.71534 * 17 16 15 33 33 H 1.07996 * 119.85217 * 180.12399 * 18 17 16 34 34 H 1.08003 * 119.89359 * 180.02562 * 19 18 17 35 35 H 1.08994 * 117.49854 * 214.99864 * 21 9 7 36 36 H 1.08997 * 117.49797 * 0.02562 * 21 9 7 37 37 H 1.08997 * 117.50505 * 359.97410 * 22 9 7 38 38 H 1.09000 * 117.49626 * 144.97302 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0516 -1.2131 -0.2644 9 6 1.2968 -2.4728 0.3671 10 6 0.2337 -2.3478 1.4603 11 7 0.8809 -2.0201 2.7376 12 6 1.9679 -1.0564 2.5435 13 6 2.5956 -0.7258 3.9047 14 7 1.5435 -0.1137 4.7336 15 6 0.2568 -0.6741 4.6723 16 6 -0.6985 -0.2926 5.6019 17 6 -1.9717 -0.8287 5.5447 18 6 -2.2920 -1.7447 4.5599 19 6 -1.3444 -2.1303 3.6321 20 6 -0.0595 -1.6000 3.6819 21 6 1.0456 -3.4875 -0.7501 22 6 2.1080 -3.7691 0.3154 23 1 -0.4849 0.8368 -0.0737 24 1 -0.3017 -3.2924 1.5560 25 1 -0.4686 -1.5574 1.1954 26 1 2.7246 -1.4878 1.8884 27 1 1.5719 -0.1462 2.0931 28 1 2.9569 -1.6388 4.3782 29 1 3.4202 -0.0253 3.7727 30 1 1.7323 0.6493 5.3020 31 1 -0.4480 0.4232 6.3709 32 1 -2.7146 -0.5351 6.2716 33 1 -3.2877 -2.1606 4.5160 34 1 -1.6018 -2.8461 2.8654 35 1 0.1229 -4.0661 -0.7063 36 1 1.3925 -3.2305 -1.7508 37 1 3.1533 -3.6971 0.0151 38 1 1.8845 -4.5327 1.0604 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393846231.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:54 Heat of formation + Delta-G solvation = 81.586661 kcal Electronic energy + Delta-G solvation = -20180.714573 eV Core-core repulsion = 17410.346427 eV Total energy + Delta-G solvation = -2770.368146 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.85796 -37.24588 -35.49078 -33.98030 -32.42056 -29.81698 -29.21585 -26.99819 -25.95994 -23.96176 -22.67074 -21.54697 -21.06666 -19.17409 -18.82733 -16.99383 -16.41159 -15.82781 -15.37715 -14.81107 -14.33210 -13.94151 -13.60227 -13.44264 -13.14856 -12.96884 -12.71189 -12.44397 -11.93656 -11.64438 -11.18573 -10.98539 -10.93224 -10.66891 -10.53972 -10.45314 -10.27091 -10.18200 -9.48164 -9.35697 -9.15665 -8.86825 -8.72410 -8.10788 -7.35313 -6.38253 -6.09277 -4.13681 2.08477 2.23389 3.15479 3.24038 3.25410 3.99694 4.21840 4.38894 4.82083 4.92673 5.38804 5.51690 5.58127 5.70634 5.82732 5.93036 6.00550 6.05395 6.11341 6.24477 6.36570 6.46050 6.58190 6.66289 6.72025 6.81102 6.84756 6.93977 7.00315 7.05480 7.21177 7.25302 7.32940 7.41616 7.47118 7.81062 7.85480 8.01489 8.26965 8.30588 8.42381 8.73198 9.34596 10.80348 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.018578 B = 0.009665 C = 0.008124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.829559 B = 2896.466028 C = 3445.906284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.878 3.122 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.270 1.270 7 C -0.496 4.496 8 H 0.064 0.936 9 C 0.047 3.953 10 C 0.086 3.914 11 N -0.481 5.481 12 C 0.047 3.953 13 C 0.109 3.891 14 N -0.760 5.760 15 C 0.167 3.833 16 C -0.174 4.174 17 C -0.128 4.128 18 C -0.146 4.146 19 C -0.130 4.130 20 C 0.088 3.912 21 C -0.198 4.198 22 C -0.203 4.203 23 H 0.265 0.735 24 H 0.039 0.961 25 H 0.106 0.894 26 H 0.121 0.879 27 H 0.069 0.931 28 H 0.055 0.945 29 H 0.073 0.927 30 H 0.393 0.607 31 H 0.110 0.890 32 H 0.109 0.891 33 H 0.110 0.890 34 H 0.120 0.880 35 H 0.064 0.936 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.157 -0.585 7.654 7.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.129 4.129 3 Si 0.705 3.295 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.195 1.195 7 C -0.533 4.533 8 H 0.082 0.918 9 C 0.046 3.954 10 C -0.038 4.038 11 N -0.194 5.194 12 C -0.079 4.079 13 C -0.016 4.016 14 N -0.394 5.394 15 C 0.064 3.936 16 C -0.197 4.197 17 C -0.148 4.148 18 C -0.166 4.166 19 C -0.152 4.152 20 C -0.015 4.015 21 C -0.236 4.236 22 C -0.240 4.240 23 H 0.076 0.924 24 H 0.057 0.943 25 H 0.124 0.876 26 H 0.138 0.862 27 H 0.087 0.913 28 H 0.073 0.927 29 H 0.091 0.909 30 H 0.227 0.773 31 H 0.128 0.872 32 H 0.127 0.873 33 H 0.128 0.872 34 H 0.138 0.862 35 H 0.082 0.918 36 H 0.096 0.904 37 H 0.091 0.909 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.407 -0.975 7.673 7.746 hybrid contribution 0.211 1.710 -0.118 1.727 sum 0.618 0.735 7.555 7.616 Atomic orbital electron populations 1.69781 1.05948 1.27147 1.47472 1.24913 0.94726 0.98901 0.94372 0.86882 0.80151 0.83404 0.79055 1.20039 1.21112 1.19541 1.20400 0.96195 0.89760 1.46974 0.91757 1.19013 0.94886 0.88441 0.93025 1.22050 0.96995 1.00496 0.84300 1.58346 1.10501 1.40582 1.09946 1.23227 0.94765 0.95867 0.94073 1.22045 0.90076 0.97104 0.92353 1.44751 1.06956 1.36444 1.51238 1.17554 0.86154 0.94647 0.95285 1.20329 0.94086 1.05211 1.00124 1.20561 0.95637 0.99160 0.99426 1.20618 0.98726 1.00366 0.96912 1.20814 0.91703 1.02253 1.00445 1.18674 0.91807 0.96188 0.94875 1.22926 0.98319 1.06974 0.95431 1.22849 0.95912 1.02788 1.02464 0.92431 0.94316 0.87634 0.86150 0.91325 0.92723 0.90887 0.77254 0.87213 0.87270 0.87216 0.86174 0.91764 0.90413 0.90863 0.91140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.98 10.87 55.43 0.60 -22.38 16 2 C 0.07 1.88 3.16 -17.82 -0.06 1.82 16 3 Si 0.88 19.81 28.52 -169.99 -4.85 14.96 16 4 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.29 -6.58 7.11 56.52 0.40 -6.17 16 6 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 7 C -0.50 -12.36 5.81 -34.44 -0.20 -12.56 16 8 H 0.06 1.60 7.87 -52.49 -0.41 1.19 16 9 C 0.05 1.10 1.25 -155.66 -0.19 0.91 16 10 C 0.09 1.99 3.91 -3.82 -0.01 1.97 16 11 N -0.48 -10.50 4.74 -170.92 -0.81 -11.31 16 12 C 0.05 1.01 3.96 -3.76 -0.01 1.00 16 13 C 0.11 1.94 7.35 -3.36 -0.02 1.92 16 14 N -0.76 -13.25 5.93 -57.61 -0.34 -13.59 16 15 C 0.17 3.22 6.48 -83.38 -0.54 2.67 16 16 C -0.17 -2.96 9.90 -39.42 -0.39 -3.35 16 17 C -0.13 -2.07 10.05 -39.56 -0.40 -2.47 16 18 C -0.15 -2.50 10.03 -39.62 -0.40 -2.89 16 19 C -0.13 -2.54 8.96 -39.31 -0.35 -2.90 16 20 C 0.09 1.85 5.82 -83.58 -0.49 1.36 16 21 C -0.20 -4.36 9.92 -26.69 -0.26 -4.63 16 22 C -0.20 -4.28 9.95 -26.69 -0.27 -4.54 16 23 H 0.27 6.89 8.32 -40.82 -0.34 6.55 16 24 H 0.04 0.86 6.98 -51.93 -0.36 0.49 16 25 H 0.11 2.73 5.21 -51.93 -0.27 2.46 16 26 H 0.12 2.69 5.40 -51.93 -0.28 2.41 16 27 H 0.07 1.65 4.41 -51.93 -0.23 1.42 16 28 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.39 5.73 8.89 -40.82 -0.36 5.37 16 31 H 0.11 1.59 8.06 -52.48 -0.42 1.16 16 32 H 0.11 1.45 8.06 -52.48 -0.42 1.03 16 33 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 34 H 0.12 2.31 6.28 -52.48 -0.33 1.98 16 35 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 36 H 0.08 1.73 8.14 -51.93 -0.42 1.31 16 37 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 38 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 LS Contribution 294.30 15.07 4.43 4.43 Total: -1.00 -26.51 294.30 -9.75 -36.26 By element: Atomic # 1 Polarization: 18.50 SS G_CDS: -5.19 Total: 13.31 kcal Atomic # 6 Polarization: -18.09 SS G_CDS: -3.60 Total: -21.69 kcal Atomic # 7 Polarization: -46.73 SS G_CDS: -0.55 Total: -47.28 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -4.85 Total: 14.96 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -26.51 -9.75 -36.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393846231.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.842 kcal (2) G-P(sol) polarization free energy of solvation -26.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.256 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds