Wall clock time and date at job start Mon Mar 30 2020 07:00:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 120.00260 * 2 1 4 4 H 1.48500 * 109.47285 * 240.00043 * 3 2 1 5 5 H 1.48500 * 109.47029 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46775 * 119.99986 * 3 2 1 7 7 C 1.37882 * 119.99790 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00154 * 163.61426 * 7 2 1 9 9 C 1.50701 * 119.99625 * 343.61250 * 7 2 1 10 10 C 1.53003 * 115.55132 * 324.24242 * 9 7 2 11 11 N 1.46895 * 109.47160 * 292.67226 * 10 9 7 12 12 C 1.46556 * 110.99923 * 39.85352 * 11 10 9 13 13 C 1.53493 * 109.11865 * 178.98243 * 12 11 10 14 14 N 1.47276 * 107.24295 * 298.32597 * 13 12 11 15 15 C 1.40473 * 117.64428 * 41.17802 * 14 13 12 16 16 C 1.38642 * 119.47594 * 168.49992 * 15 14 13 17 17 C 1.38270 * 120.00542 * 179.44660 * 16 15 14 18 18 C 1.38255 * 119.97877 * 359.97438 * 17 16 15 19 19 C 1.38117 * 120.29824 * 0.12231 * 18 17 16 20 20 C 1.39090 * 120.22060 * 0.02562 * 19 18 17 21 21 C 1.53001 * 117.49866 * 109.91870 * 9 7 2 22 22 C 1.53005 * 117.49313 * 178.57797 * 9 7 2 23 23 H 0.97000 * 119.99590 * 5.03632 * 1 2 3 24 24 H 1.08997 * 109.46732 * 172.66810 * 10 9 7 25 25 H 1.08996 * 109.46721 * 52.67551 * 10 9 7 26 26 H 1.08997 * 109.52548 * 298.86925 * 12 11 10 27 27 H 1.08997 * 109.53370 * 59.01541 * 12 11 10 28 28 H 1.09004 * 109.90218 * 57.75899 * 13 12 11 29 29 H 1.08996 * 109.90331 * 178.81144 * 13 12 11 30 30 H 0.96994 * 121.17891 * 221.16164 * 14 13 12 31 31 H 1.08005 * 119.99812 * 359.43620 * 16 15 14 32 32 H 1.08007 * 120.01204 * 179.71534 * 17 16 15 33 33 H 1.07996 * 119.85217 * 180.12399 * 18 17 16 34 34 H 1.08003 * 119.89359 * 180.02562 * 19 18 17 35 35 H 1.08994 * 117.49854 * 214.99864 * 21 9 7 36 36 H 1.08997 * 117.49797 * 0.02562 * 21 9 7 37 37 H 1.08997 * 117.50505 * 359.97410 * 22 9 7 38 38 H 1.09000 * 117.49626 * 144.97302 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0516 -1.2131 -0.2644 9 6 1.2968 -2.4728 0.3671 10 6 0.2337 -2.3478 1.4603 11 7 0.8809 -2.0201 2.7376 12 6 1.9679 -1.0564 2.5435 13 6 2.5956 -0.7258 3.9047 14 7 1.5435 -0.1137 4.7336 15 6 0.2568 -0.6741 4.6723 16 6 -0.6985 -0.2926 5.6019 17 6 -1.9717 -0.8287 5.5447 18 6 -2.2920 -1.7447 4.5599 19 6 -1.3444 -2.1303 3.6321 20 6 -0.0595 -1.6000 3.6819 21 6 1.0456 -3.4875 -0.7501 22 6 2.1080 -3.7691 0.3154 23 1 -0.4849 0.8368 -0.0737 24 1 -0.3017 -3.2924 1.5560 25 1 -0.4686 -1.5574 1.1954 26 1 2.7246 -1.4878 1.8884 27 1 1.5719 -0.1462 2.0931 28 1 2.9569 -1.6388 4.3782 29 1 3.4202 -0.0253 3.7727 30 1 1.7323 0.6493 5.3020 31 1 -0.4480 0.4232 6.3709 32 1 -2.7146 -0.5351 6.2716 33 1 -3.2877 -2.1606 4.5160 34 1 -1.6018 -2.8461 2.8654 35 1 0.1229 -4.0661 -0.7063 36 1 1.3925 -3.2305 -1.7508 37 1 3.1533 -3.6971 0.0151 38 1 1.8845 -4.5327 1.0604 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393846231.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:51 Heat of formation + Delta-G solvation = 66.423060 kcal Electronic energy + Delta-G solvation = -20181.372116 eV Core-core repulsion = 17410.346427 eV Total energy + Delta-G solvation = -2771.025689 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.35857 -38.88931 -36.95570 -35.51800 -34.32114 -31.26591 -30.64039 -28.60108 -27.83767 -25.50031 -24.17536 -23.08166 -22.74890 -20.89550 -20.38998 -18.40527 -18.20225 -17.31769 -16.94668 -16.60594 -16.00768 -15.41320 -15.21621 -14.89991 -14.73784 -14.42316 -14.32736 -14.02689 -13.50963 -13.34361 -12.84074 -12.73451 -12.45275 -12.33146 -12.24465 -12.06856 -11.98405 -11.65971 -11.21006 -11.01696 -10.80973 -10.53823 -10.50919 -9.85145 -8.84057 -8.13093 -7.74749 -6.09163 0.67723 0.83812 1.35593 1.39993 1.44185 2.35808 2.64242 2.91904 2.99775 3.36221 3.75351 4.00817 4.20100 4.28322 4.34099 4.52306 4.56824 4.61878 4.62329 4.68004 4.78682 4.83245 4.90219 4.99416 5.09353 5.21714 5.27736 5.31137 5.37154 5.52093 5.56159 5.57295 5.59728 5.84208 5.97003 6.05573 6.37239 6.39185 6.40697 6.73866 6.83445 7.09270 7.40639 8.86781 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.018578 B = 0.009665 C = 0.008124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.829559 B = 2896.466028 C = 3445.906284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.044 3.956 3 Si 0.923 3.077 4 H -0.273 1.273 5 H -0.294 1.294 6 H -0.257 1.257 7 C -0.499 4.499 8 H 0.059 0.941 9 C 0.022 3.978 10 C 0.100 3.900 11 N -0.484 5.484 12 C 0.051 3.949 13 C 0.115 3.885 14 N -0.756 5.756 15 C 0.149 3.851 16 C -0.174 4.174 17 C -0.119 4.119 18 C -0.151 4.151 19 C -0.146 4.146 20 C 0.048 3.952 21 C -0.201 4.201 22 C -0.181 4.181 23 H 0.259 0.741 24 H 0.037 0.963 25 H 0.076 0.924 26 H 0.105 0.895 27 H 0.040 0.960 28 H 0.060 0.940 29 H 0.096 0.904 30 H 0.408 0.592 31 H 0.139 0.861 32 H 0.147 0.853 33 H 0.135 0.865 34 H 0.110 0.890 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.080 0.920 38 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.324 -0.108 9.614 9.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.157 4.157 3 Si 0.749 3.251 4 H -0.199 1.199 5 H -0.220 1.220 6 H -0.181 1.181 7 C -0.536 4.536 8 H 0.077 0.923 9 C 0.021 3.979 10 C -0.026 4.026 11 N -0.197 5.197 12 C -0.076 4.076 13 C -0.010 4.010 14 N -0.391 5.391 15 C 0.046 3.954 16 C -0.197 4.197 17 C -0.139 4.139 18 C -0.171 4.171 19 C -0.168 4.168 20 C -0.054 4.054 21 C -0.239 4.239 22 C -0.218 4.218 23 H 0.068 0.932 24 H 0.055 0.945 25 H 0.093 0.907 26 H 0.123 0.877 27 H 0.058 0.942 28 H 0.078 0.922 29 H 0.114 0.886 30 H 0.245 0.755 31 H 0.157 0.843 32 H 0.164 0.836 33 H 0.153 0.847 34 H 0.128 0.872 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.098 0.902 38 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 0.588 -0.494 9.658 9.689 hybrid contribution 0.080 1.540 -0.687 1.688 sum 0.668 1.046 8.972 9.057 Atomic orbital electron populations 1.69934 1.07092 1.27037 1.49029 1.25368 0.95061 1.01078 0.94181 0.86172 0.79138 0.80320 0.79497 1.19856 1.22030 1.18112 1.20529 0.95895 0.90668 1.46483 0.92277 1.19117 0.96024 0.88838 0.93882 1.21738 0.96370 0.99193 0.85260 1.58427 1.10893 1.41154 1.09203 1.22992 0.94341 0.94419 0.95884 1.21977 0.90425 0.98133 0.90484 1.44693 1.06301 1.36855 1.51281 1.17836 0.87375 0.94646 0.95534 1.20738 0.93847 1.05193 0.99957 1.21038 0.96098 0.97564 0.99151 1.20958 0.99317 1.00426 0.96418 1.20959 0.92167 1.02539 1.01163 1.18939 0.92463 0.98291 0.95732 1.22931 0.99214 1.06721 0.95069 1.22812 0.95874 1.01396 1.01722 0.93161 0.94459 0.90671 0.87666 0.94169 0.92199 0.88559 0.75521 0.84275 0.83563 0.84692 0.87152 0.90906 0.91020 0.90183 0.90077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -48.68 10.87 21.45 0.23 -48.44 16 2 C 0.04 2.25 3.16 84.66 0.27 2.52 16 3 Si 0.92 40.82 28.52 68.60 1.96 42.77 16 4 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 5 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 6 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 7 C -0.50 -25.15 5.81 25.60 0.15 -25.00 16 8 H 0.06 2.97 7.87 -2.91 -0.02 2.95 16 9 C 0.02 1.04 1.25 -52.92 -0.07 0.98 16 10 C 0.10 4.72 3.91 86.31 0.34 5.05 16 11 N -0.48 -21.29 4.74 -694.66 -3.29 -24.59 16 12 C 0.05 2.17 3.96 86.53 0.34 2.51 16 13 C 0.11 3.92 7.35 86.40 0.63 4.55 16 14 N -0.76 -24.87 5.93 -336.17 -1.99 -26.86 16 15 C 0.15 5.54 6.48 38.09 0.25 5.78 16 16 C -0.17 -5.40 9.90 22.37 0.22 -5.18 16 17 C -0.12 -3.45 10.05 22.28 0.22 -3.23 16 18 C -0.15 -4.87 10.03 22.25 0.22 -4.65 16 19 C -0.15 -5.73 8.96 22.45 0.20 -5.53 16 20 C 0.05 2.02 5.82 38.32 0.22 2.25 16 21 C -0.20 -8.88 9.92 30.62 0.30 -8.58 16 22 C -0.18 -7.53 9.95 30.62 0.30 -7.22 16 23 H 0.26 13.87 8.32 -92.71 -0.77 13.10 16 24 H 0.04 1.70 6.98 -2.39 -0.02 1.69 16 25 H 0.08 4.04 5.21 -2.39 -0.01 4.03 16 26 H 0.11 4.73 5.40 -2.39 -0.01 4.71 16 27 H 0.04 1.94 4.41 -2.39 -0.01 1.93 16 28 H 0.06 1.99 8.14 -2.38 -0.02 1.97 16 29 H 0.10 2.80 8.14 -2.39 -0.02 2.78 16 30 H 0.41 10.79 8.89 -92.71 -0.82 9.96 16 31 H 0.14 3.43 8.06 -2.91 -0.02 3.41 16 32 H 0.15 3.15 8.06 -2.91 -0.02 3.13 16 33 H 0.14 3.57 8.06 -2.91 -0.02 3.55 16 34 H 0.11 4.38 6.28 -2.91 -0.02 4.36 16 35 H 0.07 3.04 8.14 -2.39 -0.02 3.03 16 36 H 0.07 3.21 8.14 -2.39 -0.02 3.19 16 37 H 0.08 3.20 8.14 -2.39 -0.02 3.18 16 38 H 0.08 3.19 8.14 -2.39 -0.02 3.17 16 Total: -1.00 -57.26 294.30 0.76 -56.50 By element: Atomic # 1 Polarization: 36.12 SS G_CDS: 0.24 Total: 36.36 kcal Atomic # 6 Polarization: -39.35 SS G_CDS: 3.61 Total: -35.74 kcal Atomic # 7 Polarization: -94.84 SS G_CDS: -5.06 Total: -99.89 kcal Atomic # 14 Polarization: 40.82 SS G_CDS: 1.96 Total: 42.77 kcal Total: -57.26 0.76 -56.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393846231.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.923 kcal (2) G-P(sol) polarization free energy of solvation -57.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.499 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds