Wall clock time and date at job start Mon Mar 30 2020 07:43:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46907 * 111.00064 * 2 1 4 4 C 1.53003 * 109.46759 * 293.95551 * 3 2 1 5 5 C 1.52998 * 109.47042 * 179.97438 * 4 3 2 6 6 C 1.53003 * 109.47353 * 179.97438 * 5 4 3 7 7 C 1.50697 * 109.46919 * 179.97438 * 6 5 4 8 8 H 1.07997 * 120.00506 * 359.97438 * 7 6 5 9 9 C 1.37879 * 119.99647 * 179.97438 * 7 6 5 10 10 N 1.31515 * 119.99884 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00052 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47328 * 59.99910 * 11 9 7 13 13 H 1.48502 * 109.47213 * 180.02562 * 11 9 7 14 14 H 1.48505 * 109.47131 * 300.00162 * 11 9 7 15 15 C 1.39032 * 111.00380 * 123.95352 * 2 1 3 16 16 C 1.38888 * 120.16830 * 296.32603 * 15 2 1 17 17 C 1.38015 * 120.06689 * 180.28227 * 16 15 2 18 18 C 1.38572 * 120.42133 * 359.71253 * 17 16 15 19 19 C 1.37796 * 120.34678 * 0.02562 * 18 17 16 20 20 C 1.39720 * 119.91802 * 359.97438 * 19 18 17 21 21 C 1.43205 * 120.20635 * 180.02562 * 20 19 18 22 22 N 3.54358 * 118.82805 * 209.71500 * 2 1 3 23 23 H 1.09004 * 109.47239 * 296.04801 * 1 2 3 24 24 H 1.09000 * 109.47566 * 56.04587 * 1 2 3 25 25 H 1.09002 * 109.47205 * 176.04919 * 1 2 3 26 26 H 1.08998 * 109.46998 * 53.95033 * 3 2 1 27 27 H 1.08995 * 109.46987 * 173.95545 * 3 2 1 28 28 H 1.09007 * 109.47120 * 299.99565 * 4 3 2 29 29 H 1.09002 * 109.47554 * 59.99587 * 4 3 2 30 30 H 1.08997 * 109.47353 * 299.99848 * 5 4 3 31 31 H 1.09003 * 109.47109 * 59.99976 * 5 4 3 32 32 H 1.08997 * 109.46946 * 300.00316 * 6 5 4 33 33 H 1.09003 * 109.46853 * 60.00039 * 6 5 4 34 34 H 0.97005 * 119.99697 * 179.97438 * 10 9 7 35 35 H 1.08000 * 119.96935 * 359.97438 * 16 15 2 36 36 H 1.07996 * 119.79223 * 179.73957 * 17 16 15 37 37 H 1.08008 * 119.82413 * 180.02562 * 18 17 16 38 38 H 1.08001 * 120.03771 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6314 2.0574 -1.3183 5 6 2.1791 3.4860 -1.3181 6 6 1.8156 4.1718 -2.6366 7 6 2.3546 5.5791 -2.6361 8 1 2.9013 5.9477 -1.7808 9 6 2.1497 6.3962 -3.7277 10 7 1.4835 5.9475 -4.7690 11 14 2.8184 8.1404 -3.7274 12 1 4.2955 8.1043 -3.5785 13 1 2.4655 8.8060 -5.0071 14 1 2.2253 8.8977 -2.5960 15 6 1.9673 -0.7249 1.0766 16 6 1.7203 -0.3027 2.3765 17 6 2.2209 -1.0207 3.4436 18 6 2.9669 -2.1686 3.2288 19 6 3.2177 -2.6061 1.9465 20 6 2.7179 -1.8902 0.8557 21 6 2.9744 -2.3396 -0.4796 22 7 3.1776 -2.6962 -1.5388 23 1 -0.3634 0.4513 0.9233 24 1 -0.3634 0.5740 -0.8524 25 1 -0.3634 -1.0252 -0.0708 26 1 1.5610 1.9274 0.8309 27 1 3.0796 1.3444 0.1082 28 1 2.0658 1.5015 -2.1493 29 1 0.5471 2.0844 -1.4266 30 1 1.7444 4.0417 -0.4873 31 1 3.2634 3.4594 -1.2097 32 1 2.2506 3.6160 -3.4672 33 1 0.7314 4.1984 -2.7455 34 1 1.3391 6.5225 -5.5369 35 1 1.1402 0.5910 2.5525 36 1 2.0298 -0.6861 4.4525 37 1 3.3536 -2.7233 4.0710 38 1 3.7994 -3.5016 1.7848 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395337146.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:33 Heat of formation + Delta-G solvation = 45.335684 kcal Electronic energy + Delta-G solvation = -17949.312936 eV Core-core repulsion = 15177.372829 eV Total energy + Delta-G solvation = -2771.940106 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.36274 -37.31842 -36.31186 -34.42574 -32.32665 -31.60497 -30.21258 -28.55373 -26.30193 -24.52508 -23.92304 -22.27184 -20.65296 -20.06064 -18.99554 -16.85939 -16.22566 -15.98922 -15.28528 -15.27251 -14.71616 -14.43470 -14.39032 -13.78125 -13.54442 -13.17683 -12.75636 -12.61099 -12.48244 -12.32147 -11.99656 -11.90702 -11.73510 -11.64986 -11.34316 -10.95318 -10.54799 -10.51978 -10.39137 -9.61865 -9.34119 -9.26305 -9.08939 -8.91862 -8.63552 -8.31348 -5.96447 -3.98934 0.52940 0.92307 2.76882 2.84931 3.34925 3.39257 3.41589 3.61671 3.67329 3.84467 4.48417 4.56792 4.63664 4.85967 5.03308 5.05036 5.21504 5.31191 5.38914 5.42994 5.48084 5.49311 5.77230 5.85447 5.87891 6.01338 6.06666 6.09463 6.17532 6.38296 6.50017 6.73903 6.86903 6.96606 7.13012 7.23342 7.57275 7.71654 7.87477 8.04297 8.46707 9.08351 9.64825 11.14864 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.031063 B = 0.003460 C = 0.003326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.175883 B = 8091.267100 C = 8417.730609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.519 5.519 3 C 0.062 3.938 4 C -0.115 4.115 5 C -0.108 4.108 6 C 0.022 3.978 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.056 3.944 10 N -0.896 5.896 11 Si 0.892 3.108 12 H -0.277 1.277 13 H -0.287 1.287 14 H -0.277 1.277 15 C 0.146 3.854 16 C -0.151 4.151 17 C -0.082 4.082 18 C -0.128 4.128 19 C -0.068 4.068 20 C -0.012 4.012 21 C 0.266 3.734 22 N -0.415 5.415 23 H 0.034 0.966 24 H 0.084 0.916 25 H 0.067 0.933 26 H 0.041 0.959 27 H 0.075 0.925 28 H 0.065 0.935 29 H 0.059 0.941 30 H 0.046 0.954 31 H 0.047 0.953 32 H 0.015 0.985 33 H 0.014 0.986 34 H 0.261 0.739 35 H 0.131 0.869 36 H 0.129 0.871 37 H 0.132 0.868 38 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.283 -16.515 18.953 25.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.240 5.240 3 C -0.064 4.064 4 C -0.153 4.153 5 C -0.147 4.147 6 C -0.015 4.015 7 C -0.560 4.560 8 H 0.072 0.928 9 C -0.145 4.145 10 N -0.535 5.535 11 Si 0.719 3.281 12 H -0.202 1.202 13 H -0.213 1.213 14 H -0.203 1.203 15 C 0.049 3.951 16 C -0.172 4.172 17 C -0.101 4.101 18 C -0.146 4.146 19 C -0.089 4.089 20 C -0.016 4.016 21 C -0.050 4.050 22 N -0.090 5.090 23 H 0.052 0.948 24 H 0.103 0.897 25 H 0.086 0.914 26 H 0.059 0.941 27 H 0.093 0.907 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.034 0.966 33 H 0.033 0.967 34 H 0.070 0.930 35 H 0.149 0.851 36 H 0.147 0.853 37 H 0.150 0.850 38 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 0.108 -17.225 16.662 23.966 hybrid contribution -0.041 1.617 1.022 1.913 sum 0.067 -15.609 17.685 23.588 Atomic orbital electron populations 1.22505 0.85084 1.02505 1.01840 1.59471 1.09057 1.15678 1.39752 1.22370 1.00034 0.84852 0.99108 1.21704 1.01064 0.97021 0.95477 1.21596 0.99427 0.92643 1.00994 1.19078 0.96703 0.94647 0.91095 1.21244 1.34983 0.97978 1.01764 0.92810 1.25035 0.95351 0.98484 0.95640 1.69961 1.40990 1.36523 1.06049 0.86668 0.79449 0.84763 0.77172 1.20248 1.21300 1.20276 1.18849 0.94371 0.92266 0.89622 1.21722 1.01753 1.01196 0.92488 1.21265 0.95475 0.94282 0.99115 1.21077 0.99731 0.97227 0.96604 1.21137 0.97626 0.98878 0.91250 1.16052 1.02785 0.96407 0.86359 1.25310 0.93789 0.93309 0.92580 1.81207 1.08250 1.08937 1.10601 0.94785 0.89709 0.91445 0.94107 0.90700 0.91604 0.92238 0.93561 0.93415 0.96612 0.96724 0.92978 0.85110 0.85337 0.84983 0.84781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 9.18 60.06 0.55 0.85 16 2 N -0.52 -6.62 4.10 -178.70 -0.73 -7.35 16 3 C 0.06 0.85 4.54 -3.82 -0.02 0.84 16 4 C -0.11 -1.97 5.15 -26.73 -0.14 -2.10 16 5 C -0.11 -2.23 5.15 -26.73 -0.14 -2.37 16 6 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 7 C -0.52 -15.06 9.11 -34.44 -0.31 -15.37 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 10 N -0.90 -27.50 13.29 55.43 0.74 -26.76 16 11 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 13 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 14 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 15 C 0.15 1.59 4.67 -83.56 -0.39 1.20 16 16 C -0.15 -1.30 8.64 -39.42 -0.34 -1.64 16 17 C -0.08 -0.54 10.03 -39.54 -0.40 -0.93 16 18 C -0.13 -0.77 10.02 -39.62 -0.40 -1.17 16 19 C -0.07 -0.51 9.75 -39.19 -0.38 -0.89 16 20 C -0.01 -0.12 5.76 -106.62 -0.61 -0.74 16 21 C 0.27 3.58 14.81 -22.47 -0.33 3.25 16 22 N -0.41 -6.63 18.54 41.83 0.78 -5.85 16 23 H 0.03 0.32 7.32 -51.93 -0.38 -0.06 16 24 H 0.08 1.01 6.30 -51.93 -0.33 0.68 16 25 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.04 0.51 7.48 -51.93 -0.39 0.13 16 27 H 0.07 1.06 8.06 -51.93 -0.42 0.64 16 28 H 0.07 1.23 8.14 -51.92 -0.42 0.80 16 29 H 0.06 1.00 6.47 -51.93 -0.34 0.66 16 30 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 31 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 35 H 0.13 1.04 7.12 -52.49 -0.37 0.66 16 36 H 0.13 0.54 8.06 -52.49 -0.42 0.12 16 37 H 0.13 0.45 8.06 -52.48 -0.42 0.03 16 38 H 0.13 0.75 8.06 -52.49 -0.42 0.32 16 LS Contribution 325.84 15.07 4.91 4.91 Total: -1.00 -32.73 325.84 -8.05 -40.77 By element: Atomic # 1 Polarization: 0.03 SS G_CDS: -5.57 Total: -5.54 kcal Atomic # 6 Polarization: -13.97 SS G_CDS: -3.14 Total: -17.11 kcal Atomic # 7 Polarization: -40.75 SS G_CDS: 0.78 Total: -39.97 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -32.73 -8.05 -40.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395337146.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.107 kcal (2) G-P(sol) polarization free energy of solvation -32.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.772 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds