Wall clock time and date at job start Mon Mar 30 2020 07:02:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39652 * 120.14725 * 260.27863 * 3 2 1 5 5 C 1.37931 * 119.84545 * 179.72103 * 4 3 2 6 6 C 1.38387 * 120.14776 * 0.57637 * 5 4 3 7 7 C 1.38342 * 120.30616 * 359.68028 * 6 5 4 8 8 C 1.50696 * 119.92571 * 180.02562 * 7 6 5 9 9 N 1.46904 * 109.46839 * 270.02094 * 8 7 6 10 10 C 1.46906 * 110.99777 * 180.02562 * 9 8 7 11 11 C 1.53004 * 109.46802 * 179.97438 * 10 9 8 12 12 C 1.53001 * 109.46974 * 179.97438 * 11 10 9 13 13 C 1.53004 * 109.46974 * 179.97438 * 12 11 10 14 14 C 1.50703 * 109.46737 * 179.97438 * 13 12 11 15 15 H 1.07991 * 120.00036 * 0.02562 * 14 13 12 16 16 C 1.37873 * 119.99514 * 179.97438 * 14 13 12 17 17 N 1.31510 * 120.00468 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 119.99912 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46786 * 60.00023 * 18 16 14 20 20 H 1.48503 * 109.47325 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.46988 * 300.00438 * 18 16 14 22 22 C 1.37967 * 120.14964 * 0.03915 * 7 6 5 23 23 H 1.08004 * 120.07835 * 359.97438 * 4 3 2 24 24 H 1.07998 * 119.92387 * 180.27808 * 5 4 3 25 25 H 1.08001 * 119.84964 * 179.69650 * 6 5 4 26 26 H 1.09000 * 109.47242 * 30.01456 * 8 7 6 27 27 H 1.09003 * 109.47479 * 150.02051 * 8 7 6 28 28 H 1.00897 * 111.00631 * 56.04207 * 9 8 7 29 29 H 1.08994 * 109.46923 * 299.99135 * 10 9 8 30 30 H 1.09000 * 109.47229 * 60.00193 * 10 9 8 31 31 H 1.09007 * 109.46965 * 299.99488 * 11 10 9 32 32 H 1.09000 * 109.47425 * 59.99533 * 11 10 9 33 33 H 1.08998 * 109.46755 * 299.99803 * 12 11 10 34 34 H 1.09000 * 109.47403 * 59.99548 * 12 11 10 35 35 H 1.09007 * 109.46965 * 299.99516 * 13 12 11 36 36 H 1.08995 * 109.46977 * 59.99710 * 13 12 11 37 37 H 0.97002 * 120.00770 * 179.97438 * 17 16 14 38 38 H 1.08003 * 120.07671 * 180.02562 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2692 0.2049 1.1903 5 6 4.6485 0.1985 1.1841 6 6 5.3374 0.0023 0.0000 7 6 4.6490 -0.1953 -1.1836 8 6 5.4077 -0.4088 -2.4680 9 7 5.6538 0.8881 -3.1126 10 6 6.3927 0.7187 -4.3710 11 6 6.6290 2.0879 -5.0118 12 6 7.3991 1.9115 -6.3221 13 6 7.6348 3.2806 -6.9633 14 6 8.3939 3.1069 -8.2535 15 1 8.6792 2.1190 -8.5834 16 6 8.7231 4.2093 -9.0133 17 7 8.3752 5.4124 -8.6119 18 14 9.6647 3.9942 -10.6123 19 1 8.8777 3.1417 -11.5392 20 1 9.8934 5.3230 -11.2347 21 1 10.9718 3.3470 -10.3338 22 6 3.2693 -0.1971 -1.1908 23 1 2.7328 0.3633 2.1142 24 1 5.1921 0.3518 2.1046 25 1 6.4174 0.0031 -0.0001 26 1 6.3598 -0.8932 -2.2513 27 1 4.8219 -1.0409 -3.1354 28 1 6.1396 1.5155 -2.4893 29 1 7.3516 0.2420 -4.1679 30 1 5.8133 0.0946 -5.0513 31 1 5.6698 2.5643 -5.2150 32 1 7.2081 2.7124 -4.3316 33 1 8.3581 1.4353 -6.1185 34 1 6.8204 1.2868 -7.0025 35 1 6.6755 3.7565 -7.1669 36 1 8.2133 3.9056 -6.2830 37 1 8.6072 6.1880 -9.1462 38 1 2.7331 -0.3519 -2.1154 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395465444.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:10 Heat of formation + Delta-G solvation = 28.085314 kcal Electronic energy + Delta-G solvation = -17035.860582 eV Core-core repulsion = 14263.172444 eV Total energy + Delta-G solvation = -2772.688138 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.97021 -37.12064 -36.44765 -34.37041 -32.63787 -31.67459 -31.27348 -28.34135 -25.67078 -24.28038 -23.73659 -22.02374 -21.41701 -20.02769 -18.60416 -16.73919 -16.37665 -16.16587 -15.52287 -14.99771 -14.76539 -14.45910 -14.22687 -14.18902 -13.76211 -13.41897 -13.15785 -12.71701 -12.60320 -12.33596 -12.28518 -11.84434 -11.68958 -11.47828 -11.23535 -10.98672 -10.56457 -10.53143 -10.43142 -9.63076 -9.36660 -9.32844 -9.21085 -8.99550 -8.47113 -8.31949 -5.97172 -3.99595 0.40462 0.90705 2.35713 2.60007 3.34355 3.38726 3.41085 3.46662 3.54096 4.18999 4.42628 4.46596 4.49824 4.65064 4.85071 4.89914 5.13866 5.27288 5.37575 5.38600 5.46827 5.54447 5.57205 5.87220 5.87873 5.90270 6.11597 6.13459 6.20854 6.40035 6.49739 6.81263 6.91670 6.98945 7.16718 7.20923 7.31800 7.71234 7.87246 8.03751 8.46346 9.07806 9.64220 11.14123 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.038804 B = 0.002492 C = 0.002432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.402703 B =11235.431264 C =11508.723535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C 0.256 3.744 3 C -0.032 4.032 4 C -0.073 4.073 5 C -0.120 4.120 6 C -0.083 4.083 7 C -0.080 4.080 8 C 0.094 3.906 9 N -0.687 5.687 10 C 0.059 3.941 11 C -0.116 4.116 12 C -0.109 4.109 13 C 0.021 3.979 14 C -0.521 4.521 15 H 0.053 0.947 16 C 0.056 3.944 17 N -0.896 5.896 18 Si 0.891 3.109 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 C -0.047 4.047 23 H 0.131 0.869 24 H 0.133 0.867 25 H 0.129 0.871 26 H 0.042 0.958 27 H 0.083 0.917 28 H 0.342 0.658 29 H 0.028 0.972 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.054 0.946 33 H 0.045 0.955 34 H 0.047 0.953 35 H 0.016 0.984 36 H 0.014 0.986 37 H 0.261 0.739 38 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.907 -12.785 20.445 24.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.095 5.095 2 C -0.059 4.059 3 C -0.035 4.035 4 C -0.093 4.093 5 C -0.138 4.138 6 C -0.103 4.103 7 C -0.080 4.080 8 C -0.034 4.034 9 N -0.318 5.318 10 C -0.069 4.069 11 C -0.154 4.154 12 C -0.147 4.147 13 C -0.016 4.016 14 C -0.559 4.559 15 H 0.072 0.928 16 C -0.145 4.145 17 N -0.536 5.536 18 Si 0.719 3.281 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.203 1.203 22 C -0.068 4.068 23 H 0.149 0.851 24 H 0.151 0.849 25 H 0.147 0.853 26 H 0.060 0.940 27 H 0.101 0.899 28 H 0.160 0.840 29 H 0.046 0.954 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.073 0.927 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.034 0.966 36 H 0.033 0.967 37 H 0.070 0.930 38 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -8.276 -12.585 20.065 25.090 hybrid contribution 1.854 -0.168 -0.571 1.947 sum -6.422 -12.753 19.494 24.164 Atomic orbital electron populations 1.81262 1.12110 1.08805 1.07290 1.25730 0.92690 0.93705 0.93800 1.15996 0.84273 1.07880 0.95393 1.21174 0.94457 0.97104 0.96606 1.21068 0.93569 1.00599 0.98592 1.21364 1.00480 0.96408 0.92007 1.19774 0.93259 0.99837 0.95140 1.20918 0.98135 0.92427 0.91965 1.60556 1.53343 1.10953 1.06935 1.22109 0.95318 0.99182 0.90324 1.21644 1.01119 0.94827 0.97800 1.21590 0.97919 1.01079 0.94110 1.19090 0.96786 0.90766 0.94964 1.21250 1.35666 0.92791 1.06235 0.92826 1.25033 0.96145 0.95343 0.98004 1.69953 1.46962 0.97933 1.38717 0.86672 0.80432 0.77157 0.83810 1.20253 1.21304 1.20289 1.21098 0.93688 0.95466 0.96590 0.85115 0.84890 0.85336 0.93991 0.89856 0.84038 0.95367 0.91108 0.91594 0.92705 0.93665 0.93430 0.96604 0.96744 0.92976 0.84733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -5.20 18.54 41.83 0.78 -4.42 16 2 C 0.26 2.55 15.33 -22.47 -0.34 2.21 16 3 C -0.03 -0.25 5.73 -106.93 -0.61 -0.87 16 4 C -0.07 -0.45 9.76 -39.17 -0.38 -0.83 16 5 C -0.12 -0.64 10.03 -39.64 -0.40 -1.04 16 6 C -0.08 -0.51 9.69 -39.49 -0.38 -0.90 16 7 C -0.08 -0.60 5.39 -104.68 -0.56 -1.17 16 8 C 0.09 0.79 5.81 -4.98 -0.03 0.76 16 9 N -0.69 -7.44 6.49 -115.05 -0.75 -8.18 16 10 C 0.06 0.76 5.69 -3.82 -0.02 0.73 16 11 C -0.12 -1.89 5.48 -26.73 -0.15 -2.04 16 12 C -0.11 -2.19 5.15 -26.73 -0.14 -2.33 16 13 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 14 C -0.52 -14.89 9.11 -34.44 -0.31 -15.21 16 15 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 16 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 17 N -0.90 -27.22 13.29 55.43 0.74 -26.48 16 18 Si 0.89 21.76 29.54 -169.99 -5.02 16.73 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 22 C -0.05 -0.38 9.40 -39.17 -0.37 -0.75 16 23 H 0.13 0.58 8.06 -52.48 -0.42 0.15 16 24 H 0.13 0.42 8.06 -52.49 -0.42 -0.01 16 25 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 26 H 0.04 0.32 8.08 -51.93 -0.42 -0.10 16 27 H 0.08 0.68 8.08 -51.93 -0.42 0.27 16 28 H 0.34 3.47 8.72 -39.29 -0.34 3.13 16 29 H 0.03 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 35 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 38 H 0.13 1.03 8.06 -52.48 -0.42 0.61 16 LS Contribution 334.48 15.07 5.04 5.04 Total: -1.00 -31.86 334.48 -8.95 -40.81 By element: Atomic # 1 Polarization: 1.79 SS G_CDS: -5.80 Total: -4.00 kcal Atomic # 6 Polarization: -15.56 SS G_CDS: -3.94 Total: -19.49 kcal Atomic # 7 Polarization: -39.85 SS G_CDS: 0.77 Total: -39.09 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.86 -8.95 -40.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395465444.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.892 kcal (2) G-P(sol) polarization free energy of solvation -31.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.806 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds