Wall clock time and date at job start Mon Mar 30 2020 06:11:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 C 1.81401 * 103.00051 * 2 1 4 4 C 1.53000 * 109.47342 * 179.97438 * 3 2 1 5 5 C 1.53004 * 109.46804 * 60.00122 * 4 3 2 6 6 C 1.52999 * 109.46881 * 300.00335 * 4 3 2 7 7 C 1.52999 * 109.47258 * 180.02562 * 4 3 2 8 8 O 1.42900 * 109.47216 * 184.87265 * 7 4 3 9 9 C 1.42892 * 113.99944 * 184.98223 * 8 7 4 10 10 C 1.53001 * 109.47162 * 184.96502 * 9 8 7 11 11 C 1.50692 * 115.55258 * 54.21740 * 10 9 8 12 12 H 1.07996 * 120.00546 * 219.92417 * 11 10 9 13 13 C 1.37885 * 119.99814 * 39.65303 * 11 10 9 14 14 N 1.31516 * 119.99862 * 355.97571 * 13 11 10 15 15 Si 1.86800 * 120.00240 * 175.97112 * 13 11 10 16 16 H 1.48497 * 109.46736 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.46663 * 119.99883 * 15 13 11 18 18 H 1.48496 * 109.47382 * 240.00226 * 15 13 11 19 19 C 1.53003 * 117.51689 * 199.92783 * 10 9 8 20 20 C 1.52999 * 60.00138 * 107.47866 * 19 10 9 21 21 H 1.09005 * 109.47128 * 179.97438 * 1 2 3 22 22 H 1.08996 * 109.47172 * 299.99617 * 1 2 3 23 23 H 1.08998 * 109.47026 * 60.00012 * 1 2 3 24 24 H 1.09009 * 109.46962 * 60.00197 * 3 2 1 25 25 H 1.08999 * 109.47350 * 300.00757 * 3 2 1 26 26 H 1.09000 * 109.46773 * 184.87483 * 5 4 3 27 27 H 1.08994 * 109.47244 * 304.87739 * 5 4 3 28 28 H 1.08999 * 109.46716 * 64.88330 * 5 4 3 29 29 H 1.08998 * 109.47517 * 305.04436 * 6 4 3 30 30 H 1.08996 * 109.47396 * 65.05111 * 6 4 3 31 31 H 1.09001 * 109.47036 * 185.04797 * 6 4 3 32 32 H 1.09000 * 109.46919 * 64.86863 * 7 4 3 33 33 H 1.09004 * 109.46890 * 304.87431 * 7 4 3 34 34 H 1.09000 * 109.47282 * 64.96681 * 9 8 7 35 35 H 1.09001 * 109.47730 * 304.96282 * 9 8 7 36 36 H 0.96996 * 119.99905 * 184.99720 * 14 13 11 37 37 H 1.09006 * 117.49423 * 214.96669 * 19 10 9 38 38 H 1.08997 * 117.50127 * 359.97438 * 19 10 9 39 39 H 1.09003 * 117.49550 * 252.50760 * 20 19 10 40 40 H 1.09000 * 117.52078 * 107.48566 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7423 1.9400 0.0006 5 6 4.3308 1.2807 -1.2483 6 6 4.3297 1.2809 1.2502 7 6 4.0864 3.4308 0.0013 8 8 5.5016 3.5930 -0.1125 9 6 5.9415 4.9486 -0.0087 10 6 7.4479 5.0172 -0.2670 11 6 7.9139 4.4036 -1.5621 12 1 8.8290 3.8308 -1.5898 13 6 7.1690 4.5688 -2.7106 14 7 6.0129 5.1938 -2.6603 15 14 7.8019 3.9052 -4.3380 16 1 9.1166 3.2479 -4.1267 17 1 6.8354 2.9157 -4.8784 18 1 7.9565 5.0238 -5.3023 19 6 8.1965 6.2517 0.2396 20 6 8.3780 4.9050 0.9427 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 1.8031 2.2371 0.8901 25 1 1.8030 2.2372 -0.8899 26 1 5.4190 1.3274 -1.2053 27 1 4.0133 0.2390 -1.2932 28 1 3.9795 1.8062 -2.1363 29 1 3.8452 1.6879 2.1376 30 1 4.1625 0.2047 1.2061 31 1 5.4003 1.4805 1.2970 32 1 3.7426 3.8826 0.9317 33 1 3.5959 3.9172 -0.8419 34 1 5.7269 5.3245 0.9917 35 1 5.4184 5.5579 -0.7457 36 1 5.4554 5.2468 -3.4522 37 1 9.0261 6.6201 -0.3641 38 1 7.6158 7.0155 0.7567 39 1 7.9166 4.7828 1.9227 40 1 9.3267 4.3871 0.8019 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395993773.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:26 Heat of formation + Delta-G solvation = -34.806456 kcal Electronic energy + Delta-G solvation = -18149.970786 eV Core-core repulsion = 15477.706656 eV Total energy + Delta-G solvation = -2672.264130 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 258.139 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -37.98184 -36.53972 -34.41690 -32.02938 -29.17422 -27.08690 -26.76781 -26.50936 -25.34248 -24.22336 -21.12440 -19.12266 -18.64177 -16.39436 -16.03672 -15.06967 -15.04173 -14.87054 -14.58117 -14.11479 -13.76751 -13.69568 -13.33455 -13.03418 -12.82334 -12.11397 -11.91330 -11.73099 -11.37069 -11.29018 -11.09566 -10.95697 -10.69159 -10.52755 -10.41190 -10.37458 -10.27361 -10.06899 -9.61980 -9.44970 -8.82734 -8.61241 -8.36424 -8.03677 -7.58386 -5.87968 -3.98020 1.68885 2.63709 3.32003 3.40236 3.44589 4.44552 4.59563 4.97428 5.02335 5.03212 5.08847 5.24071 5.43340 5.57616 5.60340 5.63018 5.74980 5.81441 6.06622 6.21921 6.24006 6.34240 6.36914 6.42730 6.52132 6.58528 6.65367 6.73316 6.75299 6.85232 6.94192 7.03109 7.21006 7.34749 7.63406 8.02069 8.44770 8.60423 8.98900 9.63022 11.08221 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.022560 B = 0.005920 C = 0.005111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.864012 B = 4728.404242 C = 5477.336528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 S -0.248 6.248 3 C -0.072 4.072 4 C -0.043 4.043 5 C -0.133 4.133 6 C -0.136 4.136 7 C 0.082 3.918 8 O -0.351 6.351 9 C 0.109 3.891 10 C 0.055 3.945 11 C -0.472 4.472 12 H 0.058 0.942 13 C 0.077 3.923 14 N -0.883 5.883 15 Si 0.891 3.109 16 H -0.274 1.274 17 H -0.283 1.283 18 H -0.285 1.285 19 C -0.201 4.201 20 C -0.209 4.209 21 H 0.097 0.903 22 H 0.072 0.928 23 H 0.073 0.927 24 H 0.077 0.923 25 H 0.080 0.920 26 H 0.073 0.927 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.046 0.954 30 H 0.057 0.943 31 H 0.070 0.930 32 H 0.027 0.973 33 H 0.043 0.957 34 H -0.007 1.007 35 H 0.094 0.906 36 H 0.257 0.743 37 H 0.079 0.921 38 H 0.063 0.937 39 H 0.066 0.934 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.967 -6.005 5.260 12.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.300 4.300 2 S -0.022 6.022 3 C -0.221 4.221 4 C -0.044 4.044 5 C -0.190 4.190 6 C -0.194 4.194 7 C 0.002 3.998 8 O -0.269 6.269 9 C 0.033 3.967 10 C 0.055 3.945 11 C -0.509 4.509 12 H 0.076 0.924 13 C -0.125 4.125 14 N -0.521 5.521 15 Si 0.720 3.280 16 H -0.198 1.198 17 H -0.209 1.209 18 H -0.212 1.212 19 C -0.239 4.239 20 C -0.246 4.246 21 H 0.115 0.885 22 H 0.091 0.909 23 H 0.092 0.908 24 H 0.096 0.904 25 H 0.099 0.901 26 H 0.092 0.908 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.065 0.935 30 H 0.076 0.924 31 H 0.089 0.911 32 H 0.045 0.955 33 H 0.061 0.939 34 H 0.011 0.989 35 H 0.112 0.888 36 H 0.067 0.933 37 H 0.098 0.902 38 H 0.082 0.918 39 H 0.085 0.915 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -9.311 -6.936 5.085 12.676 hybrid contribution -0.859 1.068 -0.753 1.564 sum -10.171 -5.868 4.332 12.516 Atomic orbital electron populations 1.23411 0.95968 1.06039 1.04573 1.86867 1.05405 1.12021 1.97922 1.23521 1.00309 0.93675 1.04560 1.20280 0.90225 0.95971 0.97898 1.21763 1.02630 0.98998 0.95635 1.21834 1.02098 0.99917 0.95524 1.22155 0.85905 0.93292 0.98402 1.87897 1.17636 1.27520 1.93827 1.22163 0.95730 0.83211 0.95617 1.18882 0.88549 0.95116 0.91989 1.20443 1.07937 1.31797 0.90772 0.92396 1.24853 0.94768 0.94216 0.98639 1.69792 1.10858 1.42735 1.28740 0.86541 0.79102 0.78544 0.83853 1.19824 1.20932 1.21173 1.22948 1.04668 0.91121 1.05175 1.22871 1.02849 1.01597 0.97270 0.88453 0.90877 0.90785 0.90397 0.90098 0.90751 0.92769 0.92908 0.93454 0.92390 0.91099 0.95506 0.93924 0.98926 0.88797 0.93274 0.90224 0.91800 0.91516 0.90704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.21 10.76 101.05 1.09 -0.13 16 2 S -0.25 -3.19 19.45 -107.50 -2.09 -5.28 16 3 C -0.07 -0.98 4.94 37.16 0.18 -0.79 16 4 C -0.04 -0.69 0.63 -154.51 -0.10 -0.79 16 5 C -0.13 -2.36 8.05 37.16 0.30 -2.07 16 6 C -0.14 -2.13 8.08 37.16 0.30 -1.83 16 7 C 0.08 1.54 4.81 37.16 0.18 1.72 16 8 O -0.35 -8.10 8.73 -35.23 -0.31 -8.41 16 9 C 0.11 2.63 4.94 37.16 0.18 2.81 16 10 C 0.06 1.39 2.14 -155.66 -0.33 1.06 16 11 C -0.47 -13.02 8.75 -34.44 -0.30 -13.32 16 12 H 0.06 1.62 7.82 -52.49 -0.41 1.21 16 13 C 0.08 2.09 5.39 -17.82 -0.10 2.00 16 14 N -0.88 -24.10 10.50 55.43 0.58 -23.51 16 15 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 16 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 17 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 18 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 19 C -0.20 -4.59 9.96 -26.73 -0.27 -4.86 16 20 C -0.21 -4.69 9.92 -26.73 -0.27 -4.95 16 21 H 0.10 0.77 8.14 -51.92 -0.42 0.35 16 22 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 23 H 0.07 0.64 8.14 -51.92 -0.42 0.22 16 24 H 0.08 0.95 8.14 -51.92 -0.42 0.53 16 25 H 0.08 1.07 8.14 -51.92 -0.42 0.65 16 26 H 0.07 1.51 7.73 -51.93 -0.40 1.11 16 27 H 0.05 0.88 6.74 -51.93 -0.35 0.53 16 28 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.86 7.12 -51.93 -0.37 0.49 16 31 H 0.07 1.24 7.69 -51.93 -0.40 0.84 16 32 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 34 H -0.01 -0.16 8.09 -51.93 -0.42 -0.58 16 35 H 0.09 2.44 5.93 -51.93 -0.31 2.13 16 36 H 0.26 6.75 8.32 -40.82 -0.34 6.41 16 37 H 0.08 1.81 8.14 -51.93 -0.42 1.39 16 38 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 39 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 40 H 0.07 1.65 8.14 -51.93 -0.42 1.23 16 LS Contribution 333.16 15.07 5.02 5.02 Total: -1.00 -27.81 333.16 -8.23 -36.04 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -7.29 Total: 1.01 kcal Atomic # 6 Polarization: -22.02 SS G_CDS: 0.87 Total: -21.15 kcal Atomic # 7 Polarization: -24.10 SS G_CDS: 0.58 Total: -23.51 kcal Atomic # 8 Polarization: -8.10 SS G_CDS: -0.31 Total: -8.41 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: -3.19 SS G_CDS: -2.09 Total: -5.28 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -27.81 -8.23 -36.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395993773.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.233 kcal (2) G-P(sol) polarization free energy of solvation -27.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds