Wall clock time and date at job start Mon Mar 30 2020 06:11:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 C 1.81401 * 103.00051 * 2 1 4 4 C 1.53000 * 109.47342 * 179.97438 * 3 2 1 5 5 C 1.53004 * 109.46804 * 60.00122 * 4 3 2 6 6 C 1.52999 * 109.46881 * 300.00335 * 4 3 2 7 7 C 1.52999 * 109.47258 * 180.02562 * 4 3 2 8 8 O 1.42900 * 109.47216 * 184.87265 * 7 4 3 9 9 C 1.42892 * 113.99944 * 184.98223 * 8 7 4 10 10 C 1.53001 * 109.47162 * 184.96502 * 9 8 7 11 11 C 1.50692 * 115.55258 * 54.21740 * 10 9 8 12 12 H 1.07996 * 120.00546 * 219.92417 * 11 10 9 13 13 C 1.37885 * 119.99814 * 39.65303 * 11 10 9 14 14 N 1.31516 * 119.99862 * 355.97571 * 13 11 10 15 15 Si 1.86800 * 120.00240 * 175.97112 * 13 11 10 16 16 H 1.48497 * 109.46736 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.46663 * 119.99883 * 15 13 11 18 18 H 1.48496 * 109.47382 * 240.00226 * 15 13 11 19 19 C 1.53003 * 117.51689 * 199.92783 * 10 9 8 20 20 C 1.52999 * 60.00138 * 107.47866 * 19 10 9 21 21 H 1.09005 * 109.47128 * 179.97438 * 1 2 3 22 22 H 1.08996 * 109.47172 * 299.99617 * 1 2 3 23 23 H 1.08998 * 109.47026 * 60.00012 * 1 2 3 24 24 H 1.09009 * 109.46962 * 60.00197 * 3 2 1 25 25 H 1.08999 * 109.47350 * 300.00757 * 3 2 1 26 26 H 1.09000 * 109.46773 * 184.87483 * 5 4 3 27 27 H 1.08994 * 109.47244 * 304.87739 * 5 4 3 28 28 H 1.08999 * 109.46716 * 64.88330 * 5 4 3 29 29 H 1.08998 * 109.47517 * 305.04436 * 6 4 3 30 30 H 1.08996 * 109.47396 * 65.05111 * 6 4 3 31 31 H 1.09001 * 109.47036 * 185.04797 * 6 4 3 32 32 H 1.09000 * 109.46919 * 64.86863 * 7 4 3 33 33 H 1.09004 * 109.46890 * 304.87431 * 7 4 3 34 34 H 1.09000 * 109.47282 * 64.96681 * 9 8 7 35 35 H 1.09001 * 109.47730 * 304.96282 * 9 8 7 36 36 H 0.96996 * 119.99905 * 184.99720 * 14 13 11 37 37 H 1.09006 * 117.49423 * 214.96669 * 19 10 9 38 38 H 1.08997 * 117.50127 * 359.97438 * 19 10 9 39 39 H 1.09003 * 117.49550 * 252.50760 * 20 19 10 40 40 H 1.09000 * 117.52078 * 107.48566 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7423 1.9400 0.0006 5 6 4.3308 1.2807 -1.2483 6 6 4.3297 1.2809 1.2502 7 6 4.0864 3.4308 0.0013 8 8 5.5016 3.5930 -0.1125 9 6 5.9415 4.9486 -0.0087 10 6 7.4479 5.0172 -0.2670 11 6 7.9139 4.4036 -1.5621 12 1 8.8290 3.8308 -1.5898 13 6 7.1690 4.5688 -2.7106 14 7 6.0129 5.1938 -2.6603 15 14 7.8019 3.9052 -4.3380 16 1 9.1166 3.2479 -4.1267 17 1 6.8354 2.9157 -4.8784 18 1 7.9565 5.0238 -5.3023 19 6 8.1965 6.2517 0.2396 20 6 8.3780 4.9050 0.9427 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 1.8031 2.2371 0.8901 25 1 1.8030 2.2372 -0.8899 26 1 5.4190 1.3274 -1.2053 27 1 4.0133 0.2390 -1.2932 28 1 3.9795 1.8062 -2.1363 29 1 3.8452 1.6879 2.1376 30 1 4.1625 0.2047 1.2061 31 1 5.4003 1.4805 1.2970 32 1 3.7426 3.8826 0.9317 33 1 3.5959 3.9172 -0.8419 34 1 5.7269 5.3245 0.9917 35 1 5.4184 5.5579 -0.7457 36 1 5.4554 5.2468 -3.4522 37 1 9.0261 6.6201 -0.3641 38 1 7.6158 7.0155 0.7567 39 1 7.9166 4.7828 1.9227 40 1 9.3267 4.3871 0.8019 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395993773.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:23 Heat of formation + Delta-G solvation = -48.011456 kcal Electronic energy + Delta-G solvation = -18150.543398 eV Core-core repulsion = 15477.706656 eV Total energy + Delta-G solvation = -2672.836742 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 258.139 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -39.57165 -38.23497 -36.05808 -34.08309 -29.94792 -28.35575 -28.13461 -28.10259 -27.32769 -25.91004 -22.93039 -21.01324 -20.04821 -18.28526 -17.29243 -16.83013 -16.58734 -16.29960 -16.20836 -15.54142 -15.34575 -14.75252 -14.64695 -14.24460 -14.16872 -13.71617 -13.40269 -13.11281 -12.90978 -12.84669 -12.80065 -12.65204 -12.41093 -12.28490 -12.03844 -11.89415 -11.70384 -11.62876 -11.33990 -10.79888 -10.69627 -10.54263 -10.19427 -9.92416 -8.57255 -7.92014 -6.08872 0.73884 1.39902 1.43366 1.52665 1.72473 2.45599 2.96971 3.24571 3.68790 3.76842 3.88017 4.06496 4.33775 4.36906 4.37211 4.40024 4.44975 4.53619 4.58937 4.70258 4.75601 4.83311 4.91373 4.91914 4.95259 4.98046 5.08023 5.09168 5.13101 5.22141 5.33867 5.46195 5.52602 5.55452 5.63783 5.98463 6.44831 6.77171 6.98345 7.53369 9.00906 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.022560 B = 0.005920 C = 0.005111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.864012 B = 4728.404242 C = 5477.336528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 S -0.284 6.284 3 C -0.063 4.063 4 C -0.039 4.039 5 C -0.124 4.124 6 C -0.128 4.128 7 C 0.079 3.921 8 O -0.371 6.371 9 C 0.118 3.882 10 C 0.016 3.984 11 C -0.494 4.494 12 H 0.042 0.958 13 C 0.040 3.960 14 N -0.896 5.896 15 Si 0.942 3.058 16 H -0.274 1.274 17 H -0.282 1.282 18 H -0.279 1.279 19 C -0.192 4.192 20 C -0.192 4.192 21 H 0.112 0.888 22 H 0.086 0.914 23 H 0.080 0.920 24 H 0.095 0.905 25 H 0.081 0.919 26 H 0.040 0.960 27 H 0.068 0.932 28 H 0.037 0.963 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.046 0.954 32 H 0.045 0.955 33 H 0.028 0.972 34 H 0.009 0.991 35 H 0.071 0.929 36 H 0.257 0.743 37 H 0.075 0.925 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.312 -6.460 6.097 14.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.287 4.287 2 S -0.059 6.059 3 C -0.212 4.212 4 C -0.040 4.040 5 C -0.181 4.181 6 C -0.185 4.185 7 C 0.000 4.000 8 O -0.290 6.290 9 C 0.042 3.958 10 C 0.015 3.985 11 C -0.531 4.531 12 H 0.061 0.939 13 C -0.161 4.161 14 N -0.534 5.534 15 Si 0.769 3.231 16 H -0.199 1.199 17 H -0.208 1.208 18 H -0.205 1.205 19 C -0.230 4.230 20 C -0.229 4.229 21 H 0.131 0.869 22 H 0.105 0.895 23 H 0.099 0.901 24 H 0.114 0.886 25 H 0.099 0.901 26 H 0.060 0.940 27 H 0.087 0.913 28 H 0.056 0.944 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.047 0.953 34 H 0.027 0.973 35 H 0.089 0.911 36 H 0.066 0.934 37 H 0.093 0.907 38 H 0.100 0.900 39 H 0.104 0.896 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -10.653 -7.386 5.927 14.254 hybrid contribution -0.487 1.175 -0.994 1.614 sum -11.140 -6.211 4.933 13.675 Atomic orbital electron populations 1.23477 0.92197 1.07388 1.05635 1.86962 1.09531 1.11348 1.98039 1.23348 0.97810 0.94512 1.05480 1.20219 0.92455 0.93967 0.97312 1.21654 1.00408 1.00015 0.96069 1.21740 1.00542 1.00492 0.95755 1.22330 0.83781 0.95222 0.98631 1.87873 1.20136 1.26975 1.94002 1.21925 0.94841 0.83458 0.95582 1.19069 0.89819 0.97194 0.92391 1.20611 1.07705 1.32323 0.92490 0.93943 1.25414 0.95027 0.94634 1.00989 1.69914 1.11250 1.43105 1.29164 0.85755 0.78463 0.78088 0.80823 1.19872 1.20831 1.20527 1.22938 1.04036 0.91288 1.04736 1.22872 1.02043 1.00931 0.97083 0.86932 0.89493 0.90060 0.88623 0.90060 0.94035 0.91278 0.94388 0.91777 0.91572 0.93530 0.93648 0.95338 0.97344 0.91136 0.93351 0.90686 0.89959 0.89591 0.90761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.82 10.76 113.37 1.22 -0.60 16 2 S -0.28 -6.71 19.45 -56.49 -1.10 -7.81 16 3 C -0.06 -1.59 4.94 71.98 0.36 -1.24 16 4 C -0.04 -1.23 0.63 -52.18 -0.03 -1.26 16 5 C -0.12 -4.48 8.05 71.98 0.58 -3.90 16 6 C -0.13 -3.85 8.08 71.98 0.58 -3.27 16 7 C 0.08 2.96 4.81 71.98 0.35 3.31 16 8 O -0.37 -17.34 8.73 -148.98 -1.30 -18.64 16 9 C 0.12 5.71 4.94 71.98 0.36 6.06 16 10 C 0.02 0.79 2.14 -52.93 -0.11 0.68 16 11 C -0.49 -27.68 8.75 25.60 0.22 -27.46 16 12 H 0.04 2.43 7.82 -2.91 -0.02 2.41 16 13 C 0.04 2.17 5.39 84.66 0.46 2.63 16 14 N -0.90 -49.59 10.50 21.45 0.23 -49.36 16 15 Si 0.94 44.26 29.54 68.60 2.03 46.28 16 16 H -0.27 -12.77 7.11 99.48 0.71 -12.07 16 17 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 18 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 19 C -0.19 -8.58 9.96 30.59 0.30 -8.28 16 20 C -0.19 -8.42 9.92 30.60 0.30 -8.11 16 21 H 0.11 1.41 8.14 -2.39 -0.02 1.40 16 22 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 23 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 24 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 25 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 26 H 0.04 1.74 7.73 -2.39 -0.02 1.72 16 27 H 0.07 2.24 6.74 -2.39 -0.02 2.23 16 28 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.07 1.88 7.12 -2.39 -0.02 1.86 16 31 H 0.05 1.62 7.69 -2.39 -0.02 1.60 16 32 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.03 1.14 8.14 -2.38 -0.02 1.12 16 34 H 0.01 0.38 8.09 -2.39 -0.02 0.36 16 35 H 0.07 3.72 5.93 -2.39 -0.01 3.70 16 36 H 0.26 13.66 8.32 -92.71 -0.77 12.88 16 37 H 0.07 3.37 8.14 -2.38 -0.02 3.35 16 38 H 0.08 3.33 8.14 -2.39 -0.02 3.31 16 39 H 0.09 3.40 8.14 -2.39 -0.02 3.38 16 40 H 0.07 3.22 8.14 -2.39 -0.02 3.20 16 Total: -1.00 -59.50 333.16 5.40 -54.09 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: 0.97 Total: 16.87 kcal Atomic # 6 Polarization: -46.01 SS G_CDS: 4.58 Total: -41.43 kcal Atomic # 7 Polarization: -49.59 SS G_CDS: 0.23 Total: -49.36 kcal Atomic # 8 Polarization: -17.34 SS G_CDS: -1.30 Total: -18.64 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.28 kcal Atomic # 16 Polarization: -6.71 SS G_CDS: -1.10 Total: -7.81 kcal Total: -59.50 5.40 -54.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395993773.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.083 kcal (2) G-P(sol) polarization free energy of solvation -59.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds