Wall clock time and date at job start Mon Mar 30 2020 07:24:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47169 * 2 1 4 4 C 1.53002 * 109.47035 * 119.99352 * 2 1 3 5 5 H 1.08994 * 109.47389 * 299.99846 * 4 2 1 6 6 C 1.47206 * 109.47100 * 179.97438 * 4 2 1 7 7 N 3.43556 * 155.17248 * 119.99243 * 2 1 3 8 8 C 1.53006 * 109.46948 * 60.00262 * 4 2 1 9 9 N 1.46499 * 109.46915 * 184.99886 * 8 4 2 10 10 C 1.39685 * 119.99934 * 179.97438 * 9 8 4 11 11 C 1.39337 * 119.95002 * 359.72964 * 10 9 8 12 12 C 1.38476 * 120.42243 * 179.72696 * 11 10 9 13 13 C 1.37689 * 120.32543 * 0.54191 * 12 11 10 14 14 C 1.40748 * 119.89293 * 359.73041 * 13 12 11 15 15 C 1.41414 * 120.20730 * 180.02562 * 14 13 12 16 16 H 1.07994 * 120.00159 * 24.41997 * 15 14 13 17 17 C 1.39934 * 119.99766 * 204.41636 * 15 14 13 18 18 N 1.30825 * 120.00329 * 17.87750 * 17 15 14 19 19 Si 1.86803 * 119.99739 * 197.87950 * 17 15 14 20 20 H 1.48500 * 109.47358 * 59.99952 * 19 17 15 21 21 H 1.48493 * 109.46990 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.46825 * 300.00118 * 19 17 15 23 23 C 1.38278 * 119.95266 * 180.02562 * 10 9 8 24 24 H 1.09007 * 109.47279 * 300.00642 * 1 2 3 25 25 H 1.09002 * 109.47151 * 60.00304 * 1 2 3 26 26 H 1.08998 * 109.46947 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47391 * 239.99608 * 2 1 3 28 28 H 1.09002 * 109.47103 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.46836 * 299.99889 * 3 2 1 30 30 H 1.08994 * 109.47619 * 59.99930 * 3 2 1 31 31 H 1.08994 * 109.46601 * 304.99683 * 8 4 2 32 32 H 1.09003 * 109.46945 * 64.99881 * 8 4 2 33 33 H 0.97003 * 120.00087 * 359.97438 * 9 8 4 34 34 H 1.07997 * 119.78903 * 359.97438 * 11 10 9 35 35 H 1.08004 * 119.84005 * 180.27875 * 12 11 10 36 36 H 1.08001 * 120.05414 * 179.74953 * 13 12 11 37 37 H 0.96998 * 120.00238 * 179.97438 * 18 17 15 38 38 H 1.08000 * 120.15907 * 359.97098 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 1 1.6767 -0.2072 2.1392 6 6 3.5120 -0.7217 1.2491 7 7 4.6480 -0.7211 1.2494 8 6 1.5300 -2.1637 1.2494 9 7 1.9175 -2.8185 2.5013 10 6 1.5610 -4.1491 2.7330 11 6 0.8319 -4.8508 1.7751 12 6 0.4781 -6.1719 1.9922 13 6 0.8338 -6.8035 3.1628 14 6 1.5655 -6.1058 4.1420 15 6 1.9347 -6.7481 5.3465 16 1 2.0233 -7.8239 5.3796 17 6 2.1855 -5.9898 6.4955 18 7 1.7540 -4.7571 6.5728 19 14 3.1364 -6.7375 7.9189 20 1 4.4876 -7.1414 7.4537 21 1 3.2661 -5.7362 9.0078 22 1 2.4110 -7.9294 8.4270 23 6 1.9269 -4.7661 3.9151 24 1 -0.3634 0.5140 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9564 0.8899 31 1 0.4437 -2.1649 1.1599 32 1 1.9646 -2.7028 0.4076 33 1 2.4217 -2.3281 3.1693 34 1 0.5443 -4.3625 0.8558 35 1 -0.0832 -6.7082 1.2414 36 1 0.5521 -7.8328 3.3293 37 1 1.9275 -4.2316 7.3694 38 1 2.4883 -4.2218 4.6601 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397601486.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:52 Heat of formation + Delta-G solvation = 27.650472 kcal Electronic energy + Delta-G solvation = -18338.415409 eV Core-core repulsion = 15565.708414 eV Total energy + Delta-G solvation = -2772.706995 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -38.80517 -37.46020 -35.50777 -34.57302 -33.20532 -30.15487 -29.42386 -27.58582 -27.02497 -25.22275 -23.46021 -21.14815 -20.73272 -19.84636 -17.88161 -17.21988 -16.08742 -15.30540 -14.92843 -14.59702 -14.36957 -14.18778 -13.97032 -13.37468 -13.02144 -12.76037 -12.62442 -12.56561 -12.40076 -12.21347 -12.13023 -11.73125 -11.53551 -11.25914 -11.04811 -11.00650 -10.87372 -10.82893 -10.54072 -10.41104 -9.62091 -9.45202 -9.23494 -8.77615 -7.30331 -6.72093 -6.19398 -4.29998 2.78711 2.82308 2.89839 3.10327 3.13778 3.23617 3.35410 3.84301 3.99039 4.09801 4.58927 4.70253 4.74008 4.81580 5.13409 5.16897 5.37966 5.43476 5.59653 5.62570 5.77019 5.82232 5.88043 5.93015 6.07463 6.13711 6.27304 6.57260 6.87956 7.09301 7.14902 7.37511 7.42500 7.60372 7.79178 7.96030 8.09951 8.18021 8.49158 8.64744 8.83583 9.02350 9.11873 10.26773 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.023987 B = 0.004729 C = 0.004239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.041191 B = 5919.513516 C = 6603.403438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.083 4.083 3 C -0.152 4.152 4 C -0.002 4.002 5 H 0.118 0.882 6 C 0.214 3.786 7 N -0.434 5.434 8 C 0.143 3.857 9 N -0.764 5.764 10 C 0.215 3.785 11 C -0.299 4.299 12 C -0.066 4.066 13 C -0.256 4.256 14 C 0.139 3.861 15 C -0.465 4.465 16 H 0.076 0.924 17 C 0.079 3.921 18 N -0.792 5.792 19 Si 0.904 3.096 20 H -0.265 1.265 21 H -0.280 1.280 22 H -0.266 1.266 23 C -0.230 4.230 24 H 0.061 0.939 25 H 0.060 0.940 26 H 0.068 0.932 27 H 0.081 0.919 28 H 0.052 0.948 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.075 0.925 32 H 0.056 0.944 33 H 0.389 0.611 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.278 0.722 38 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.004 10.502 -8.699 13.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.103 4.103 3 C -0.209 4.209 4 C -0.024 4.024 5 H 0.135 0.865 6 C -0.104 4.104 7 N -0.110 5.110 8 C 0.016 3.984 9 N -0.398 5.398 10 C 0.117 3.883 11 C -0.322 4.322 12 C -0.085 4.085 13 C -0.277 4.277 14 C 0.136 3.864 15 C -0.495 4.495 16 H 0.094 0.906 17 C -0.139 4.139 18 N -0.418 5.418 19 Si 0.728 3.272 20 H -0.189 1.189 21 H -0.205 1.205 22 H -0.191 1.191 23 C -0.254 4.254 24 H 0.080 0.920 25 H 0.080 0.920 26 H 0.087 0.913 27 H 0.100 0.900 28 H 0.071 0.929 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.093 0.907 32 H 0.074 0.926 33 H 0.222 0.778 34 H 0.104 0.896 35 H 0.104 0.896 36 H 0.106 0.894 37 H 0.089 0.911 38 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -1.385 10.724 -8.709 13.884 hybrid contribution 0.173 -0.096 1.017 1.036 sum -1.212 10.629 -7.692 13.176 Atomic orbital electron populations 1.21938 0.93455 1.03045 1.02440 1.21060 0.96938 0.96091 0.96192 1.21915 1.01045 0.95488 1.02500 1.19347 0.81959 0.99215 1.01873 0.86472 1.29005 0.95009 0.92980 0.93423 1.81196 1.12876 1.08637 1.08285 1.21176 0.99825 0.88303 0.89088 1.44404 1.64807 1.11478 1.19126 1.17597 0.94066 0.82534 0.94122 1.19862 1.15491 0.96322 1.00495 1.20282 0.98200 0.93964 0.96043 1.20870 1.09571 0.99775 0.97482 1.17312 0.86725 0.91024 0.91344 1.19533 1.41476 0.94682 0.93840 0.90604 1.25864 0.93587 0.94555 0.99866 1.69846 1.34329 1.09216 1.28397 0.86448 0.81069 0.79682 0.79960 1.18927 1.20463 1.19058 1.20730 1.10783 0.97462 0.96402 0.91974 0.92049 0.91347 0.90029 0.92864 0.91919 0.92045 0.90716 0.92570 0.77760 0.89568 0.89598 0.89394 0.91137 0.86577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 8.85 37.16 0.33 -0.73 16 2 C -0.08 -0.66 2.48 -90.62 -0.22 -0.89 16 3 C -0.15 -1.14 8.94 37.16 0.33 -0.81 16 4 C 0.00 -0.02 1.89 -93.40 -0.18 -0.20 16 5 H 0.12 1.08 8.14 -51.93 -0.42 0.66 16 6 C 0.21 2.92 12.87 -20.76 -0.27 2.65 16 7 N -0.43 -7.16 18.54 42.15 0.78 -6.37 16 8 C 0.14 1.91 4.05 -4.04 -0.02 1.90 16 9 N -0.76 -13.81 5.52 -58.68 -0.32 -14.14 16 10 C 0.21 4.90 6.64 -83.86 -0.56 4.34 16 11 C -0.30 -6.58 9.32 -39.08 -0.36 -6.94 16 12 C -0.07 -1.50 10.01 -39.69 -0.40 -1.90 16 13 C -0.26 -6.45 9.79 -38.83 -0.38 -6.83 16 14 C 0.14 3.78 5.57 -106.85 -0.60 3.19 16 15 C -0.47 -12.63 9.05 -37.74 -0.34 -12.97 16 16 H 0.08 1.98 7.91 -52.49 -0.41 1.57 16 17 C 0.08 2.01 5.14 -17.35 -0.09 1.92 16 18 N -0.79 -20.68 10.95 55.55 0.61 -20.07 16 19 Si 0.90 19.07 29.60 -169.99 -5.03 14.04 16 20 H -0.26 -5.59 7.11 56.52 0.40 -5.18 16 21 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 22 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 23 C -0.23 -6.00 8.53 -38.68 -0.33 -6.33 16 24 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.07 0.51 6.32 -51.93 -0.33 0.18 16 27 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.05 0.47 7.23 -51.93 -0.38 0.10 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.93 5.96 -51.93 -0.31 0.62 16 32 H 0.06 0.79 7.95 -51.93 -0.41 0.38 16 33 H 0.39 6.91 8.22 -40.82 -0.34 6.58 16 34 H 0.09 1.65 6.70 -52.49 -0.35 1.30 16 35 H 0.09 1.69 8.06 -52.48 -0.42 1.27 16 36 H 0.09 2.10 8.06 -52.49 -0.42 1.67 16 37 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 38 H 0.12 3.15 6.16 -52.49 -0.32 2.82 16 LS Contribution 318.79 15.07 4.80 4.80 Total: -1.00 -29.77 318.79 -7.61 -37.38 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: -5.37 Total: 7.94 kcal Atomic # 6 Polarization: -20.51 SS G_CDS: -3.08 Total: -23.59 kcal Atomic # 7 Polarization: -41.65 SS G_CDS: 1.07 Total: -40.58 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -5.03 Total: 14.04 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -29.77 -7.61 -37.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397601486.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.033 kcal (2) G-P(sol) polarization free energy of solvation -29.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds