Wall clock time and date at job start Mon Mar 30 2020 07:24:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47169 * 2 1 4 4 C 1.53002 * 109.47035 * 119.99352 * 2 1 3 5 5 H 1.08994 * 109.47389 * 299.99846 * 4 2 1 6 6 C 1.47206 * 109.47100 * 179.97438 * 4 2 1 7 7 N 3.43556 * 155.17248 * 119.99243 * 2 1 3 8 8 C 1.53006 * 109.46948 * 60.00262 * 4 2 1 9 9 N 1.46499 * 109.46915 * 184.99886 * 8 4 2 10 10 C 1.39685 * 119.99934 * 179.97438 * 9 8 4 11 11 C 1.39337 * 119.95002 * 359.72964 * 10 9 8 12 12 C 1.38476 * 120.42243 * 179.72696 * 11 10 9 13 13 C 1.37689 * 120.32543 * 0.54191 * 12 11 10 14 14 C 1.40748 * 119.89293 * 359.73041 * 13 12 11 15 15 C 1.41414 * 120.20730 * 180.02562 * 14 13 12 16 16 H 1.07994 * 120.00159 * 24.41997 * 15 14 13 17 17 C 1.39934 * 119.99766 * 204.41636 * 15 14 13 18 18 N 1.30825 * 120.00329 * 17.87750 * 17 15 14 19 19 Si 1.86803 * 119.99739 * 197.87950 * 17 15 14 20 20 H 1.48500 * 109.47358 * 59.99952 * 19 17 15 21 21 H 1.48493 * 109.46990 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.46825 * 300.00118 * 19 17 15 23 23 C 1.38278 * 119.95266 * 180.02562 * 10 9 8 24 24 H 1.09007 * 109.47279 * 300.00642 * 1 2 3 25 25 H 1.09002 * 109.47151 * 60.00304 * 1 2 3 26 26 H 1.08998 * 109.46947 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47391 * 239.99608 * 2 1 3 28 28 H 1.09002 * 109.47103 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.46836 * 299.99889 * 3 2 1 30 30 H 1.08994 * 109.47619 * 59.99930 * 3 2 1 31 31 H 1.08994 * 109.46601 * 304.99683 * 8 4 2 32 32 H 1.09003 * 109.46945 * 64.99881 * 8 4 2 33 33 H 0.97003 * 120.00087 * 359.97438 * 9 8 4 34 34 H 1.07997 * 119.78903 * 359.97438 * 11 10 9 35 35 H 1.08004 * 119.84005 * 180.27875 * 12 11 10 36 36 H 1.08001 * 120.05414 * 179.74953 * 13 12 11 37 37 H 0.96998 * 120.00238 * 179.97438 * 18 17 15 38 38 H 1.08000 * 120.15907 * 359.97098 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 1 1.6767 -0.2072 2.1392 6 6 3.5120 -0.7217 1.2491 7 7 4.6480 -0.7211 1.2494 8 6 1.5300 -2.1637 1.2494 9 7 1.9175 -2.8185 2.5013 10 6 1.5610 -4.1491 2.7330 11 6 0.8319 -4.8508 1.7751 12 6 0.4781 -6.1719 1.9922 13 6 0.8338 -6.8035 3.1628 14 6 1.5655 -6.1058 4.1420 15 6 1.9347 -6.7481 5.3465 16 1 2.0233 -7.8239 5.3796 17 6 2.1855 -5.9898 6.4955 18 7 1.7540 -4.7571 6.5728 19 14 3.1364 -6.7375 7.9189 20 1 4.4876 -7.1414 7.4537 21 1 3.2661 -5.7362 9.0078 22 1 2.4110 -7.9294 8.4270 23 6 1.9269 -4.7661 3.9151 24 1 -0.3634 0.5140 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9564 0.8899 31 1 0.4437 -2.1649 1.1599 32 1 1.9646 -2.7028 0.4076 33 1 2.4217 -2.3281 3.1693 34 1 0.5443 -4.3625 0.8558 35 1 -0.0832 -6.7082 1.2414 36 1 0.5521 -7.8328 3.3293 37 1 1.9275 -4.2316 7.3694 38 1 2.4883 -4.2218 4.6601 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397601486.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:52 Heat of formation + Delta-G solvation = 11.295517 kcal Electronic energy + Delta-G solvation = -18339.124613 eV Core-core repulsion = 15565.708414 eV Total energy + Delta-G solvation = -2773.416199 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.02042 -38.99225 -36.68478 -36.02439 -34.93766 -31.43417 -31.29099 -28.54976 -28.11363 -27.11078 -24.70603 -22.78251 -21.84084 -21.38636 -19.06225 -18.85284 -17.67438 -16.71487 -16.51341 -16.19230 -15.46847 -15.26506 -15.11372 -14.66306 -14.48765 -14.29547 -14.00158 -13.80980 -13.58012 -13.35938 -13.15539 -12.93196 -12.83008 -12.75435 -12.49314 -12.38492 -12.08549 -11.94726 -11.68498 -11.53815 -11.41190 -11.27977 -11.05009 -10.46664 -9.22190 -8.61451 -7.89711 -6.30548 1.11167 1.35997 1.37504 1.48085 1.59886 1.71668 1.72056 2.22501 2.74635 2.82981 2.90031 3.72166 3.88327 3.89316 4.08150 4.34600 4.42467 4.55277 4.68685 4.75623 4.84490 4.88768 4.94057 5.01948 5.04871 5.15104 5.21101 5.28951 5.33509 5.45124 5.46639 5.58276 5.60790 5.97305 6.13836 6.23294 6.27535 6.52445 6.59725 6.94372 7.04443 7.07792 7.24372 8.38719 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.023987 B = 0.004729 C = 0.004239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.041191 B = 5919.513516 C = 6603.403438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.075 4.075 3 C -0.151 4.151 4 C 0.006 3.994 5 H 0.137 0.863 6 C 0.234 3.766 7 N -0.489 5.489 8 C 0.138 3.862 9 N -0.760 5.760 10 C 0.220 3.780 11 C -0.296 4.296 12 C -0.063 4.063 13 C -0.286 4.286 14 C 0.108 3.892 15 C -0.508 4.508 16 H 0.070 0.930 17 C 0.039 3.961 18 N -0.821 5.821 19 Si 0.975 3.025 20 H -0.265 1.265 21 H -0.267 1.267 22 H -0.259 1.259 23 C -0.262 4.262 24 H 0.067 0.933 25 H 0.075 0.925 26 H 0.065 0.935 27 H 0.083 0.917 28 H 0.034 0.966 29 H 0.077 0.923 30 H 0.069 0.931 31 H 0.096 0.904 32 H 0.056 0.944 33 H 0.389 0.611 34 H 0.123 0.877 35 H 0.121 0.879 36 H 0.088 0.912 37 H 0.285 0.715 38 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.085 11.725 -9.867 15.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.095 4.095 3 C -0.208 4.208 4 C -0.015 4.015 5 H 0.154 0.846 6 C -0.083 4.083 7 N -0.165 5.165 8 C 0.014 3.986 9 N -0.392 5.392 10 C 0.120 3.880 11 C -0.319 4.319 12 C -0.081 4.081 13 C -0.306 4.306 14 C 0.105 3.895 15 C -0.538 4.538 16 H 0.088 0.912 17 C -0.176 4.176 18 N -0.447 5.447 19 Si 0.796 3.204 20 H -0.190 1.190 21 H -0.191 1.191 22 H -0.183 1.183 23 C -0.286 4.286 24 H 0.086 0.914 25 H 0.094 0.906 26 H 0.084 0.916 27 H 0.102 0.898 28 H 0.053 0.947 29 H 0.096 0.904 30 H 0.088 0.912 31 H 0.114 0.886 32 H 0.074 0.926 33 H 0.222 0.778 34 H 0.141 0.859 35 H 0.139 0.861 36 H 0.106 0.894 37 H 0.095 0.905 38 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -2.474 11.982 -9.909 15.744 hybrid contribution 0.443 -0.386 1.227 1.361 sum -2.031 11.596 -8.682 14.628 Atomic orbital electron populations 1.21940 0.92068 1.03160 1.03521 1.21062 0.97854 0.96000 0.94613 1.21912 0.99861 0.95302 1.03751 1.19548 0.79742 0.97949 1.04291 0.84567 1.29614 0.95582 0.91408 0.91738 1.81214 1.14690 1.10337 1.10267 1.21447 1.01152 0.89395 0.86652 1.44554 1.63958 1.09993 1.20714 1.17708 0.92941 0.84330 0.93064 1.20274 1.14175 0.96124 1.01327 1.20682 0.97293 0.94467 0.95670 1.21031 1.10829 1.00162 0.98625 1.17696 0.87604 0.92053 0.92185 1.19790 1.44008 0.94773 0.95192 0.91176 1.26651 0.93882 0.94934 1.02120 1.69901 1.34996 1.10346 1.29439 0.85367 0.79203 0.79137 0.76668 1.19007 1.19121 1.18295 1.20667 1.12582 0.97596 0.97764 0.91401 0.90608 0.91640 0.89827 0.94671 0.90359 0.91222 0.88588 0.92572 0.77815 0.85912 0.86136 0.89400 0.90503 0.88639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 8.85 71.98 0.64 -0.86 16 2 C -0.08 -0.96 2.48 -10.79 -0.03 -0.99 16 3 C -0.15 -1.84 8.94 71.98 0.64 -1.20 16 4 C 0.01 0.12 1.89 -12.59 -0.02 0.09 16 5 H 0.14 2.08 8.14 -2.39 -0.02 2.06 16 6 C 0.23 6.10 12.87 89.44 1.15 7.25 16 7 N -0.49 -16.01 18.54 20.01 0.37 -15.64 16 8 C 0.14 3.31 4.05 86.38 0.35 3.66 16 9 N -0.76 -26.42 5.52 -339.57 -1.87 -28.29 16 10 C 0.22 9.89 6.64 38.16 0.25 10.14 16 11 C -0.30 -12.35 9.32 22.59 0.21 -12.14 16 12 C -0.06 -2.74 10.01 22.20 0.22 -2.52 16 13 C -0.29 -14.60 9.79 22.75 0.22 -14.37 16 14 C 0.11 6.05 5.57 -21.31 -0.12 5.94 16 15 C -0.51 -28.74 9.05 23.46 0.21 -28.53 16 16 H 0.07 3.86 7.91 -2.91 -0.02 3.83 16 17 C 0.04 2.04 5.14 85.25 0.44 2.48 16 18 N -0.82 -44.06 10.95 21.82 0.24 -43.82 16 19 Si 0.98 39.89 29.60 68.60 2.03 41.92 16 20 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 21 H -0.27 -10.25 7.11 99.48 0.71 -9.54 16 22 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 23 C -0.26 -14.03 8.53 22.86 0.20 -13.84 16 24 H 0.07 0.63 8.14 -2.38 -0.02 0.61 16 25 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 26 H 0.06 0.71 6.32 -2.39 -0.02 0.70 16 27 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.03 0.56 7.23 -2.39 -0.02 0.54 16 29 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.10 1.99 5.96 -2.39 -0.01 1.98 16 32 H 0.06 1.40 7.95 -2.39 -0.02 1.38 16 33 H 0.39 13.59 8.22 -92.71 -0.76 12.82 16 34 H 0.12 4.17 6.70 -2.91 -0.02 4.15 16 35 H 0.12 4.37 8.06 -2.91 -0.02 4.35 16 36 H 0.09 4.32 8.06 -2.91 -0.02 4.29 16 37 H 0.28 13.85 8.30 -92.71 -0.77 13.09 16 38 H 0.10 5.41 6.16 -2.91 -0.02 5.39 16 Total: -1.00 -67.00 318.79 5.43 -61.57 By element: Atomic # 1 Polarization: 28.86 SS G_CDS: 0.30 Total: 29.16 kcal Atomic # 6 Polarization: -49.26 SS G_CDS: 4.37 Total: -44.89 kcal Atomic # 7 Polarization: -86.49 SS G_CDS: -1.26 Total: -87.75 kcal Atomic # 14 Polarization: 39.89 SS G_CDS: 2.03 Total: 41.92 kcal Total: -67.00 5.43 -61.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397601486.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.861 kcal (2) G-P(sol) polarization free energy of solvation -66.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.566 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds