Wall clock time and date at job start Mon Mar 30 2020 07:02:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30892 * 1 3 3 Si 1.86806 * 119.99783 * 2 1 4 4 H 1.48507 * 109.46930 * 267.10881 * 3 2 1 5 5 H 1.48493 * 109.47336 * 27.11186 * 3 2 1 6 6 H 1.48505 * 109.46998 * 147.11549 * 3 2 1 7 7 C 1.39885 * 120.00379 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99997 * 342.46228 * 7 2 1 9 9 C 1.41028 * 119.99892 * 162.46049 * 7 2 1 10 10 C 1.40657 * 120.26977 * 329.57177 * 9 7 2 11 11 C 1.38015 * 119.77098 * 179.97438 * 10 9 7 12 12 N 1.39850 * 119.83998 * 179.97438 * 11 10 9 13 13 C 1.48619 * 111.00370 * 59.89264 * 12 11 10 14 14 C 1.54560 * 104.64428 * 158.72584 * 13 12 11 15 15 C 1.53624 * 104.75456 * 336.23837 * 14 13 12 16 16 C 1.52278 * 121.47309 * 216.31156 * 15 14 13 17 17 C 1.52300 * 121.45600 * 144.07076 * 15 14 13 18 18 C 1.48727 * 110.99941 * 175.48116 * 12 11 10 19 19 C 1.39603 * 120.31767 * 359.97438 * 11 10 9 20 20 C 1.38051 * 120.55254 * 0.02562 * 19 11 10 21 21 C 1.38740 * 120.22150 * 359.97438 * 20 19 11 22 22 N 1.38863 * 120.16565 * 180.02562 * 21 20 19 23 23 H 0.97000 * 120.00272 * 359.97438 * 1 2 3 24 24 H 1.07997 * 120.11959 * 359.95505 * 10 9 7 25 25 H 1.08998 * 110.40439 * 277.52213 * 13 12 11 26 26 H 1.09001 * 110.39759 * 39.93626 * 13 12 11 27 27 H 1.08997 * 110.37977 * 95.05427 * 14 13 12 28 28 H 1.08998 * 110.38174 * 217.30644 * 14 13 12 29 29 H 1.09003 * 117.51771 * 356.59901 * 16 15 14 30 30 H 1.09002 * 117.52022 * 141.72612 * 16 15 14 31 31 H 1.08993 * 117.51961 * 218.30621 * 17 15 14 32 32 H 1.09005 * 117.51168 * 3.38153 * 17 15 14 33 33 H 1.08997 * 110.44943 * 320.26134 * 18 12 11 34 34 H 1.09000 * 110.44759 * 82.80856 * 18 12 11 35 35 H 1.07997 * 119.71924 * 180.02562 * 19 11 10 36 36 H 1.08001 * 119.89371 * 179.72304 * 20 19 11 37 37 H 0.97000 * 119.99914 * 5.31072 * 22 21 20 38 38 H 0.97000 * 119.99999 * 185.31641 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2429 1.6178 0.0000 4 1 2.5515 2.0112 -1.3984 5 1 1.4112 2.6696 0.6380 6 1 3.5086 1.4586 0.7602 7 6 2.0084 -1.2114 0.0005 8 1 1.5061 -2.1249 0.2828 9 6 3.3695 -1.2398 -0.3675 10 6 3.8721 -0.3119 -1.2975 11 6 5.2060 -0.3487 -1.6499 12 7 5.7071 0.5729 -2.5747 13 6 5.5228 1.9663 -2.0916 14 6 6.5603 2.7946 -2.8829 15 6 7.6405 1.7815 -3.2914 16 6 9.1140 2.1633 -3.3318 17 6 8.3562 1.8801 -4.6321 18 6 7.1792 0.4274 -2.7280 19 6 6.0574 -1.3015 -1.0875 20 6 5.5782 -2.2185 -0.1736 21 6 4.2413 -2.2020 0.1969 22 7 3.7607 -3.1246 1.1167 23 1 -0.4850 0.8400 0.0004 24 1 3.2164 0.4267 -1.7345 25 1 4.5129 2.3137 -2.3098 26 1 5.7237 2.0272 -1.0221 27 1 6.0996 3.2355 -3.7669 28 1 6.9871 3.5728 -2.2502 29 1 9.3718 3.2000 -3.1147 30 1 9.8366 1.4188 -2.9977 31 1 8.5802 0.9493 -5.1531 32 1 8.1148 2.7300 -5.2705 33 1 7.6459 0.2383 -1.7614 34 1 7.4117 -0.3753 -3.4278 35 1 7.0996 -1.3213 -1.3699 36 1 6.2454 -2.9538 0.2514 37 1 4.3735 -3.7322 1.5596 38 1 2.8121 -3.1614 1.3163 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000400456771.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:24 Heat of formation + Delta-G solvation = 59.958531 kcal Electronic energy + Delta-G solvation = -19259.908487 eV Core-core repulsion = 16488.602475 eV Total energy + Delta-G solvation = -2771.306012 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.75736 -37.85863 -35.61325 -33.46137 -32.61354 -30.57872 -29.57865 -27.72882 -25.29623 -24.71165 -22.47967 -22.11048 -21.40360 -19.34524 -18.88721 -17.30551 -16.43120 -15.86824 -15.42218 -15.23945 -14.75472 -14.52379 -13.98492 -13.31161 -13.18429 -12.92406 -12.74823 -12.31000 -11.91747 -11.83980 -11.68799 -11.59757 -11.29156 -11.11735 -10.73015 -10.71297 -10.55826 -10.20810 -9.82291 -9.67161 -9.63820 -9.44743 -9.03971 -8.15620 -7.59055 -6.83514 -6.20070 -4.25235 2.66519 2.78538 3.16053 3.25114 3.35478 3.75569 4.05777 4.42595 4.52195 4.67258 4.86844 5.01840 5.07254 5.15233 5.42311 5.51091 5.59533 5.62961 5.78040 5.87656 5.92050 6.01854 6.06355 6.09552 6.11333 6.26501 6.29123 6.31195 6.66356 6.69170 6.97093 7.19716 7.28771 7.36746 7.50975 7.81215 7.98889 8.20336 8.40076 8.51593 8.81219 8.96034 9.01446 10.20050 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.022898 B = 0.007217 C = 0.005770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.496994 B = 3878.693351 C = 4851.607306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.085 3.915 3 Si 0.911 3.089 4 H -0.264 1.264 5 H -0.296 1.296 6 H -0.252 1.252 7 C -0.451 4.451 8 H 0.087 0.913 9 C 0.062 3.938 10 C -0.222 4.222 11 C 0.078 3.922 12 N -0.459 5.459 13 C 0.036 3.964 14 C -0.089 4.089 15 C -0.130 4.130 16 C -0.171 4.171 17 C -0.164 4.164 18 C 0.070 3.930 19 C -0.227 4.227 20 C -0.162 4.162 21 C 0.125 3.875 22 N -0.882 5.882 23 H 0.282 0.718 24 H 0.109 0.891 25 H 0.081 0.919 26 H 0.048 0.952 27 H 0.072 0.928 28 H 0.068 0.932 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.060 0.940 34 H 0.079 0.921 35 H 0.099 0.901 36 H 0.093 0.907 37 H 0.379 0.621 38 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.387 4.096 -3.174 13.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C -0.132 4.132 3 Si 0.739 3.261 4 H -0.191 1.191 5 H -0.224 1.224 6 H -0.176 1.176 7 C -0.481 4.481 8 H 0.105 0.895 9 C 0.056 3.944 10 C -0.244 4.244 11 C -0.018 4.018 12 N -0.175 5.175 13 C -0.091 4.091 14 C -0.126 4.126 15 C -0.131 4.131 16 C -0.208 4.208 17 C -0.201 4.201 18 C -0.057 4.057 19 C -0.249 4.249 20 C -0.187 4.187 21 C 0.023 3.977 22 N -0.423 5.423 23 H 0.092 0.908 24 H 0.127 0.873 25 H 0.100 0.900 26 H 0.066 0.934 27 H 0.091 0.909 28 H 0.087 0.913 29 H 0.111 0.889 30 H 0.112 0.888 31 H 0.113 0.887 32 H 0.111 0.889 33 H 0.078 0.922 34 H 0.097 0.903 35 H 0.117 0.883 36 H 0.111 0.889 37 H 0.204 0.796 38 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 11.817 4.176 -3.724 13.075 hybrid contribution 0.477 0.528 0.912 1.157 sum 12.295 4.704 -2.813 13.461 Atomic orbital electron populations 1.69716 1.07894 1.29865 1.37099 1.26017 0.94638 1.01350 0.91184 0.86423 0.80230 0.80117 0.79345 1.19064 1.22437 1.17612 1.19041 0.92786 0.95711 1.40573 0.89549 1.17269 0.92978 0.91675 0.92465 1.20510 0.93645 1.06195 1.04100 1.18488 0.93943 0.95589 0.93827 1.62736 1.11264 1.02038 1.41509 1.23213 0.99770 0.88605 0.97474 1.21833 0.94537 0.96346 0.99919 1.21673 0.93024 0.97405 1.00982 1.22904 0.93964 1.02072 1.01880 1.22898 1.03734 1.03039 0.90392 1.22626 0.88631 0.94574 0.99891 1.20280 0.97460 1.02330 1.04841 1.19894 0.93785 1.02030 1.03004 1.17912 0.92033 0.94198 0.93599 1.41952 1.10452 1.40944 1.48951 0.90776 0.87347 0.90029 0.93365 0.90919 0.91291 0.88911 0.88823 0.88747 0.88937 0.92205 0.90302 0.88293 0.88929 0.79580 0.77616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -22.23 13.93 55.54 0.77 -21.45 16 2 C 0.08 2.26 5.41 -17.34 -0.09 2.17 16 3 Si 0.91 21.41 24.66 -169.99 -4.19 17.22 16 4 H -0.26 -6.02 5.49 56.52 0.31 -5.71 16 5 H -0.30 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.25 -6.09 7.11 56.52 0.40 -5.68 16 7 C -0.45 -12.13 8.95 -37.91 -0.34 -12.47 16 8 H 0.09 2.38 6.96 -52.49 -0.37 2.01 16 9 C 0.06 1.58 5.11 -106.66 -0.54 1.03 16 10 C -0.22 -5.52 6.60 -38.75 -0.26 -5.78 16 11 C 0.08 1.77 5.48 -83.77 -0.46 1.31 16 12 N -0.46 -9.07 5.43 -166.80 -0.91 -9.98 16 13 C 0.04 0.64 5.92 -2.05 -0.01 0.63 16 14 C -0.09 -1.25 6.77 -25.59 -0.17 -1.42 16 15 C -0.13 -1.77 2.52 -154.52 -0.39 -2.16 16 16 C -0.17 -1.86 10.29 -27.03 -0.28 -2.14 16 17 C -0.16 -1.85 10.27 -27.01 -0.28 -2.13 16 18 C 0.07 1.14 5.05 -2.42 -0.01 1.13 16 19 C -0.23 -4.83 8.82 -39.14 -0.35 -5.17 16 20 C -0.16 -3.46 9.87 -39.46 -0.39 -3.85 16 21 C 0.12 2.87 6.79 -83.22 -0.56 2.30 16 22 N -0.88 -17.18 8.97 32.75 0.29 -16.89 16 23 H 0.28 7.01 8.30 -40.82 -0.34 6.67 16 24 H 0.11 2.77 4.34 -52.49 -0.23 2.54 16 25 H 0.08 1.54 7.20 -51.93 -0.37 1.17 16 26 H 0.05 0.91 7.97 -51.93 -0.41 0.49 16 27 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.06 0.99 6.26 -51.93 -0.32 0.66 16 34 H 0.08 1.24 8.12 -51.93 -0.42 0.82 16 35 H 0.10 1.86 5.75 -52.49 -0.30 1.56 16 36 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 37 H 0.38 6.09 8.84 -40.82 -0.36 5.73 16 38 H 0.39 7.76 7.12 -40.82 -0.29 7.47 16 LS Contribution 298.29 15.07 4.50 4.50 Total: -1.00 -28.43 298.29 -8.93 -37.36 By element: Atomic # 1 Polarization: 21.07 SS G_CDS: -5.27 Total: 15.80 kcal Atomic # 6 Polarization: -22.42 SS G_CDS: -4.13 Total: -26.56 kcal Atomic # 7 Polarization: -48.49 SS G_CDS: 0.16 Total: -48.32 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.19 Total: 17.22 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -28.43 -8.93 -37.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400456771.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.324 kcal (2) G-P(sol) polarization free energy of solvation -28.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.365 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds