Wall clock time and date at job start Mon Mar 30 2020 07:02:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30892 * 1 3 3 Si 1.86806 * 119.99783 * 2 1 4 4 H 1.48507 * 109.46930 * 267.10881 * 3 2 1 5 5 H 1.48493 * 109.47336 * 27.11186 * 3 2 1 6 6 H 1.48505 * 109.46998 * 147.11549 * 3 2 1 7 7 C 1.39885 * 120.00379 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99997 * 342.46228 * 7 2 1 9 9 C 1.41028 * 119.99892 * 162.46049 * 7 2 1 10 10 C 1.40657 * 120.26977 * 329.57177 * 9 7 2 11 11 C 1.38015 * 119.77098 * 179.97438 * 10 9 7 12 12 N 1.39850 * 119.83998 * 179.97438 * 11 10 9 13 13 C 1.48619 * 111.00370 * 59.89264 * 12 11 10 14 14 C 1.54560 * 104.64428 * 158.72584 * 13 12 11 15 15 C 1.53624 * 104.75456 * 336.23837 * 14 13 12 16 16 C 1.52278 * 121.47309 * 216.31156 * 15 14 13 17 17 C 1.52300 * 121.45600 * 144.07076 * 15 14 13 18 18 C 1.48727 * 110.99941 * 175.48116 * 12 11 10 19 19 C 1.39603 * 120.31767 * 359.97438 * 11 10 9 20 20 C 1.38051 * 120.55254 * 0.02562 * 19 11 10 21 21 C 1.38740 * 120.22150 * 359.97438 * 20 19 11 22 22 N 1.38863 * 120.16565 * 180.02562 * 21 20 19 23 23 H 0.97000 * 120.00272 * 359.97438 * 1 2 3 24 24 H 1.07997 * 120.11959 * 359.95505 * 10 9 7 25 25 H 1.08998 * 110.40439 * 277.52213 * 13 12 11 26 26 H 1.09001 * 110.39759 * 39.93626 * 13 12 11 27 27 H 1.08997 * 110.37977 * 95.05427 * 14 13 12 28 28 H 1.08998 * 110.38174 * 217.30644 * 14 13 12 29 29 H 1.09003 * 117.51771 * 356.59901 * 16 15 14 30 30 H 1.09002 * 117.52022 * 141.72612 * 16 15 14 31 31 H 1.08993 * 117.51961 * 218.30621 * 17 15 14 32 32 H 1.09005 * 117.51168 * 3.38153 * 17 15 14 33 33 H 1.08997 * 110.44943 * 320.26134 * 18 12 11 34 34 H 1.09000 * 110.44759 * 82.80856 * 18 12 11 35 35 H 1.07997 * 119.71924 * 180.02562 * 19 11 10 36 36 H 1.08001 * 119.89371 * 179.72304 * 20 19 11 37 37 H 0.97000 * 119.99914 * 5.31072 * 22 21 20 38 38 H 0.97000 * 119.99999 * 185.31641 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2429 1.6178 0.0000 4 1 2.5515 2.0112 -1.3984 5 1 1.4112 2.6696 0.6380 6 1 3.5086 1.4586 0.7602 7 6 2.0084 -1.2114 0.0005 8 1 1.5061 -2.1249 0.2828 9 6 3.3695 -1.2398 -0.3675 10 6 3.8721 -0.3119 -1.2975 11 6 5.2060 -0.3487 -1.6499 12 7 5.7071 0.5729 -2.5747 13 6 5.5228 1.9663 -2.0916 14 6 6.5603 2.7946 -2.8829 15 6 7.6405 1.7815 -3.2914 16 6 9.1140 2.1633 -3.3318 17 6 8.3562 1.8801 -4.6321 18 6 7.1792 0.4274 -2.7280 19 6 6.0574 -1.3015 -1.0875 20 6 5.5782 -2.2185 -0.1736 21 6 4.2413 -2.2020 0.1969 22 7 3.7607 -3.1246 1.1167 23 1 -0.4850 0.8400 0.0004 24 1 3.2164 0.4267 -1.7345 25 1 4.5129 2.3137 -2.3098 26 1 5.7237 2.0272 -1.0221 27 1 6.0996 3.2355 -3.7669 28 1 6.9871 3.5728 -2.2502 29 1 9.3718 3.2000 -3.1147 30 1 9.8366 1.4188 -2.9977 31 1 8.5802 0.9493 -5.1531 32 1 8.1148 2.7300 -5.2705 33 1 7.6459 0.2383 -1.7614 34 1 7.4117 -0.3753 -3.4278 35 1 7.0996 -1.3213 -1.3699 36 1 6.2454 -2.9538 0.2514 37 1 4.3735 -3.7322 1.5596 38 1 2.8121 -3.1614 1.3163 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000400456771.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:23 Heat of formation + Delta-G solvation = 41.575652 kcal Electronic energy + Delta-G solvation = -19260.705629 eV Core-core repulsion = 16488.602475 eV Total energy + Delta-G solvation = -2772.103153 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -41.14694 -39.39366 -36.95284 -35.38176 -34.15220 -32.38902 -30.98878 -29.24878 -26.75060 -26.53483 -23.67790 -23.30972 -23.01739 -21.05066 -20.04789 -19.14371 -18.11601 -17.52457 -16.93705 -16.57249 -16.41234 -15.70277 -15.38898 -15.03063 -14.76309 -14.40666 -14.32090 -13.91033 -13.58178 -13.45331 -13.11461 -12.95323 -12.64847 -12.56278 -12.39488 -12.24164 -11.84239 -11.69134 -11.51872 -11.20590 -11.17638 -10.93984 -10.53215 -9.70655 -9.46113 -8.81817 -7.92124 -6.23354 0.82123 0.98476 1.24454 1.36654 1.44921 2.13584 2.61588 2.82001 3.25033 3.45508 3.53879 3.60574 3.74387 3.90155 4.10992 4.21857 4.31739 4.52091 4.57589 4.63780 4.70809 4.77829 4.83015 4.86930 4.92430 4.99606 5.07035 5.10503 5.17631 5.30324 5.31984 5.40127 5.50944 5.66766 5.74194 6.03128 6.23746 6.26502 6.62938 6.68429 6.89142 7.15239 7.46072 8.26892 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.022898 B = 0.007217 C = 0.005770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.496994 B = 3878.693351 C = 4851.607306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.049 3.951 3 Si 0.959 3.041 4 H -0.261 1.261 5 H -0.285 1.285 6 H -0.264 1.264 7 C -0.475 4.475 8 H 0.065 0.935 9 C 0.031 3.969 10 C -0.232 4.232 11 C 0.067 3.933 12 N -0.475 5.475 13 C 0.032 3.968 14 C -0.079 4.079 15 C -0.153 4.153 16 C -0.151 4.151 17 C -0.157 4.157 18 C 0.070 3.930 19 C -0.213 4.213 20 C -0.163 4.163 21 C 0.117 3.883 22 N -0.872 5.872 23 H 0.287 0.713 24 H 0.093 0.907 25 H 0.063 0.937 26 H 0.035 0.965 27 H 0.079 0.921 28 H 0.089 0.911 29 H 0.109 0.891 30 H 0.103 0.897 31 H 0.099 0.901 32 H 0.104 0.896 33 H 0.059 0.941 34 H 0.082 0.918 35 H 0.130 0.870 36 H 0.128 0.872 37 H 0.397 0.603 38 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.019 4.713 -3.878 17.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C -0.164 4.164 3 Si 0.786 3.214 4 H -0.187 1.187 5 H -0.212 1.212 6 H -0.189 1.189 7 C -0.506 4.506 8 H 0.083 0.917 9 C 0.025 3.975 10 C -0.254 4.254 11 C -0.030 4.030 12 N -0.192 5.192 13 C -0.094 4.094 14 C -0.117 4.117 15 C -0.153 4.153 16 C -0.188 4.188 17 C -0.193 4.193 18 C -0.056 4.056 19 C -0.234 4.234 20 C -0.187 4.187 21 C 0.013 3.987 22 N -0.414 5.414 23 H 0.098 0.902 24 H 0.110 0.890 25 H 0.081 0.919 26 H 0.054 0.946 27 H 0.098 0.902 28 H 0.107 0.893 29 H 0.127 0.873 30 H 0.121 0.879 31 H 0.117 0.883 32 H 0.122 0.878 33 H 0.077 0.923 34 H 0.101 0.899 35 H 0.148 0.852 36 H 0.146 0.854 37 H 0.226 0.774 38 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 15.470 4.777 -4.422 16.784 hybrid contribution -0.442 0.219 1.063 1.172 sum 15.028 4.996 -3.359 16.189 Atomic orbital electron populations 1.69749 1.08723 1.30678 1.39739 1.26564 0.95170 1.03491 0.91133 0.85677 0.78703 0.77783 0.79273 1.18681 1.21172 1.18869 1.19052 0.93865 0.95244 1.42449 0.91741 1.17433 0.92948 0.93400 0.93672 1.20551 0.94777 1.05806 1.04281 1.18683 0.93356 0.96728 0.94271 1.62656 1.13800 1.02239 1.40535 1.23218 1.00273 0.88536 0.97413 1.21787 0.93669 0.96319 0.99921 1.21602 0.94693 0.95510 1.03529 1.23022 0.91850 1.03276 1.00636 1.23012 1.02480 1.03775 0.90078 1.22663 0.86237 0.96630 1.00114 1.20753 0.98750 1.00788 1.03139 1.20309 0.93439 1.02441 1.02541 1.18120 0.92614 0.94025 0.93955 1.41880 1.10803 1.40470 1.48211 0.90241 0.88959 0.91882 0.94641 0.90200 0.89290 0.87304 0.87854 0.88307 0.87803 0.92338 0.89926 0.85200 0.85421 0.77400 0.77859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -48.73 13.93 21.82 0.30 -48.43 16 2 C 0.05 2.70 5.41 85.23 0.46 3.16 16 3 Si 0.96 45.72 24.66 68.60 1.69 47.41 16 4 H -0.26 -12.08 5.49 99.48 0.55 -11.53 16 5 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 6 H -0.26 -12.90 7.11 99.48 0.71 -12.19 16 7 C -0.47 -26.68 8.95 23.35 0.21 -26.47 16 8 H 0.06 3.76 6.96 -2.91 -0.02 3.74 16 9 C 0.03 1.61 5.11 -21.18 -0.11 1.51 16 10 C -0.23 -11.68 6.60 22.81 0.15 -11.53 16 11 C 0.07 2.97 5.48 38.14 0.21 3.17 16 12 N -0.48 -18.21 5.43 -681.64 -3.70 -21.91 16 13 C 0.03 1.12 5.92 86.50 0.51 1.63 16 14 C -0.08 -2.03 6.77 31.34 0.21 -1.82 16 15 C -0.15 -3.63 2.52 -52.19 -0.13 -3.76 16 16 C -0.15 -2.59 10.29 30.40 0.31 -2.28 16 17 C -0.16 -2.91 10.27 30.41 0.31 -2.60 16 18 C 0.07 2.09 5.05 86.20 0.44 2.52 16 19 C -0.21 -8.47 8.82 22.56 0.20 -8.27 16 20 C -0.16 -6.50 9.87 22.35 0.22 -6.28 16 21 C 0.12 5.27 6.79 38.97 0.26 5.53 16 22 N -0.87 -33.33 8.97 -50.30 -0.45 -33.78 16 23 H 0.29 14.88 8.30 -92.71 -0.77 14.12 16 24 H 0.09 4.87 4.34 -2.91 -0.01 4.86 16 25 H 0.06 2.40 7.20 -2.39 -0.02 2.39 16 26 H 0.04 1.31 7.97 -2.39 -0.02 1.29 16 27 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 28 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.10 1.71 8.14 -2.38 -0.02 1.69 16 33 H 0.06 1.74 6.26 -2.39 -0.01 1.72 16 34 H 0.08 2.35 8.12 -2.39 -0.02 2.33 16 35 H 0.13 4.36 5.75 -2.91 -0.02 4.34 16 36 H 0.13 4.19 8.06 -2.91 -0.02 4.16 16 37 H 0.40 12.00 8.84 -92.71 -0.82 11.18 16 38 H 0.39 15.67 7.12 -92.71 -0.66 15.01 16 Total: -1.00 -63.04 298.29 0.55 -62.48 By element: Atomic # 1 Polarization: 40.25 SS G_CDS: -0.55 Total: 39.70 kcal Atomic # 6 Polarization: -48.75 SS G_CDS: 3.26 Total: -45.49 kcal Atomic # 7 Polarization: -100.26 SS G_CDS: -3.85 Total: -104.11 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 1.69 Total: 47.41 kcal Total: -63.04 0.55 -62.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400456771.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.060 kcal (2) G-P(sol) polarization free energy of solvation -63.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.485 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds