Wall clock time and date at job start Mon Mar 30 2020 07:14:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.36830 * 125.03578 * 2 1 4 4 H 0.96999 * 125.06411 * 0.04912 * 3 2 1 5 5 C 1.37682 * 109.87408 * 180.02562 * 3 2 1 6 6 C 1.39127 * 133.50970 * 179.97438 * 5 3 2 7 7 C 1.37750 * 119.77767 * 180.02562 * 6 5 3 8 8 C 1.38836 * 120.66954 * 359.97438 * 7 6 5 9 9 C 1.50694 * 119.73663 * 180.28176 * 8 7 6 10 10 N 1.46904 * 109.47210 * 269.73008 * 9 8 7 11 11 C 1.46900 * 110.99971 * 180.02562 * 10 9 8 12 12 C 1.50699 * 109.47007 * 179.97438 * 11 10 9 13 13 H 1.08003 * 120.00200 * 359.97438 * 12 11 10 14 14 C 1.37882 * 120.00226 * 179.97438 * 12 11 10 15 15 N 1.31513 * 119.99511 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00157 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.47104 * 60.00485 * 16 14 12 18 18 H 1.48495 * 109.47194 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47332 * 300.00411 * 16 14 12 20 20 C 1.36625 * 120.52332 * 0.02562 * 8 7 6 21 21 C 1.39628 * 119.76801 * 359.97438 * 20 8 7 22 22 C 1.34234 * 125.03312 * 180.02562 * 2 1 3 23 23 C 1.50698 * 126.50338 * 359.92943 * 22 2 1 24 24 H 1.09007 * 109.47105 * 269.96781 * 1 2 3 25 25 H 1.09005 * 109.47001 * 29.95980 * 1 2 3 26 26 H 1.08995 * 109.47311 * 149.96276 * 1 2 3 27 27 H 1.08001 * 120.11448 * 0.04500 * 6 5 3 28 28 H 1.08006 * 119.66656 * 180.02562 * 7 6 5 29 29 H 1.09006 * 109.47212 * 29.72296 * 9 8 7 30 30 H 1.09002 * 109.47354 * 149.73193 * 9 8 7 31 31 H 1.00902 * 110.99664 * 303.95522 * 10 9 8 32 32 H 1.09007 * 109.46757 * 299.99417 * 11 10 9 33 33 H 1.08991 * 109.47415 * 59.99358 * 11 10 9 34 34 H 0.97001 * 119.99399 * 180.02562 * 15 14 12 35 35 H 1.08000 * 120.11591 * 179.97438 * 20 8 7 36 36 H 1.09001 * 109.47616 * 270.04413 * 23 22 2 37 37 H 1.09005 * 109.46835 * 30.04289 * 23 22 2 38 38 H 1.08999 * 109.47133 * 150.03641 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2925 1.1204 0.0000 4 1 1.9624 2.0324 0.0007 5 6 3.6214 0.7603 -0.0006 6 6 4.8099 1.4836 -0.0013 7 6 6.0159 0.8180 -0.0023 8 6 6.0589 -0.5696 -0.0021 9 6 7.3899 -1.2762 0.0033 10 7 7.8249 -1.5116 -1.3800 11 6 9.1218 -2.2008 -1.4140 12 6 9.5341 -2.4251 -2.8460 13 1 8.8963 -2.0895 -3.6505 14 6 10.7255 -3.0586 -3.1293 15 7 11.5018 -3.4676 -2.1497 16 14 11.2362 -3.3371 -4.9044 17 1 11.3521 -2.0288 -5.5973 18 1 12.5472 -4.0338 -4.9388 19 1 10.2152 -4.1707 -5.5883 20 6 4.9041 -1.2997 -0.0014 21 6 3.6705 -0.6456 -0.0004 22 6 2.2776 -1.0991 -0.0005 23 6 1.8003 -2.5285 0.0004 24 1 -0.3634 -0.0006 1.0277 25 1 -0.3633 0.8904 -0.5132 26 1 -0.3634 -0.8896 -0.5144 27 1 4.7870 2.5634 -0.0007 28 1 6.9374 1.3814 -0.0024 29 1 8.1273 -0.6582 0.5157 30 1 7.2927 -2.2305 0.5209 31 1 7.1278 -2.0279 -1.8954 32 1 9.8713 -1.5896 -0.9112 33 1 9.0361 -3.1614 -0.9062 34 1 12.3402 -3.9129 -2.3491 35 1 4.9452 -2.3789 -0.0016 36 1 1.6855 -2.8727 1.0282 37 1 0.8409 -2.5915 -0.5132 38 1 2.5292 -3.1553 -0.5135 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000564846666.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:32 Heat of formation + Delta-G solvation = 39.411387 kcal Electronic energy + Delta-G solvation = -18023.716092 eV Core-core repulsion = 15251.519089 eV Total energy + Delta-G solvation = -2772.197003 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.25594 -37.59957 -34.86924 -33.21244 -32.40014 -31.01481 -30.07559 -28.32438 -26.49648 -25.81261 -23.90004 -21.67528 -21.28383 -20.66545 -18.99394 -17.52042 -16.53529 -15.84319 -15.01585 -14.90744 -14.69696 -14.32353 -13.95541 -13.53658 -13.22204 -13.21374 -12.98857 -12.82759 -12.65457 -12.47178 -12.23980 -11.82666 -11.49398 -11.25394 -11.19733 -10.84056 -10.66266 -10.58645 -10.50642 -9.86217 -9.35555 -9.15538 -8.43472 -7.88238 -7.46542 -7.18680 -5.98721 -4.00406 1.29437 1.83494 2.67574 3.10189 3.37281 3.40525 3.44260 4.09941 4.48012 4.58622 4.83997 5.01759 5.09153 5.20751 5.22420 5.27088 5.36996 5.46195 5.53000 5.64173 5.72371 5.73875 5.81896 5.86872 6.00023 6.14355 6.17100 6.32122 6.39962 6.64877 6.85955 6.92239 7.06810 7.29915 7.35862 7.47897 7.57521 7.83558 8.17881 8.46625 8.67352 9.08956 9.64206 11.12392 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.032098 B = 0.003619 C = 0.003487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.109468 B = 7736.105548 C = 8028.196558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.065 3.935 3 N -0.596 5.596 4 H 0.410 0.590 5 C 0.093 3.907 6 C -0.138 4.138 7 C -0.072 4.072 8 C -0.090 4.090 9 C 0.098 3.902 10 N -0.684 5.684 11 C 0.193 3.807 12 C -0.513 4.513 13 H 0.062 0.938 14 C 0.055 3.945 15 N -0.899 5.899 16 Si 0.900 3.100 17 H -0.276 1.276 18 H -0.288 1.288 19 H -0.277 1.277 20 C -0.069 4.069 21 C -0.102 4.102 22 C -0.171 4.171 23 C -0.076 4.076 24 H 0.073 0.927 25 H 0.064 0.936 26 H 0.083 0.917 27 H 0.116 0.884 28 H 0.127 0.873 29 H 0.071 0.929 30 H 0.026 0.974 31 H 0.329 0.671 32 H 0.028 0.972 33 H -0.014 1.014 34 H 0.262 0.738 35 H 0.118 0.882 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.689 7.603 6.748 23.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.042 4.042 3 N -0.200 5.200 4 H 0.246 0.754 5 C -0.013 4.013 6 C -0.158 4.158 7 C -0.092 4.092 8 C -0.092 4.092 9 C -0.031 4.031 10 N -0.315 5.315 11 C 0.067 3.933 12 C -0.552 4.552 13 H 0.080 0.920 14 C -0.146 4.146 15 N -0.539 5.539 16 Si 0.727 3.273 17 H -0.202 1.202 18 H -0.214 1.214 19 H -0.203 1.203 20 C -0.088 4.088 21 C -0.106 4.106 22 C -0.178 4.178 23 C -0.133 4.133 24 H 0.092 0.908 25 H 0.083 0.917 26 H 0.101 0.899 27 H 0.134 0.866 28 H 0.145 0.855 29 H 0.090 0.910 30 H 0.044 0.956 31 H 0.146 0.854 32 H 0.046 0.954 33 H 0.004 0.996 34 H 0.071 0.929 35 H 0.136 0.864 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -21.279 8.228 6.715 23.782 hybrid contribution 0.072 -0.517 -0.677 0.855 sum -21.207 7.711 6.037 23.359 Atomic orbital electron populations 1.20421 0.88141 1.03385 1.02763 1.19971 0.92959 0.85682 1.05606 1.41568 1.04110 1.07713 1.66637 0.75381 1.18172 0.84287 0.94153 1.04727 1.19960 0.89653 0.98636 1.07586 1.20750 0.96625 0.93874 0.97940 1.19495 0.94889 0.93657 1.01127 1.20828 0.92080 0.97441 0.92752 1.60731 1.06538 1.54512 1.09703 1.19573 0.85159 0.91376 0.97237 1.21167 1.04854 1.36955 0.92229 0.92007 1.24990 0.96453 0.95670 0.97480 1.69958 1.12386 1.40163 1.31352 0.86538 0.77566 0.78365 0.84794 1.20158 1.21371 1.20267 1.20140 0.90006 0.99325 0.99353 1.18999 0.92902 0.91904 1.06819 1.20024 0.90793 0.94604 1.12426 1.20099 1.00538 0.91308 1.01392 0.90799 0.91681 0.89873 0.86618 0.85515 0.91040 0.95596 0.85413 0.95376 0.99583 0.92891 0.86436 0.92109 0.92202 0.91719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.60 10.18 36.01 0.37 -0.23 16 2 C 0.06 0.70 7.08 -81.77 -0.58 0.12 16 3 N -0.60 -6.56 6.07 -6.95 -0.04 -6.60 16 4 H 0.41 3.19 8.96 -40.82 -0.37 2.82 16 5 C 0.09 1.30 7.28 -83.99 -0.61 0.69 16 6 C -0.14 -1.88 10.08 -39.43 -0.40 -2.28 16 7 C -0.07 -1.11 9.66 -39.54 -0.38 -1.49 16 8 C -0.09 -1.51 5.36 -104.99 -0.56 -2.07 16 9 C 0.10 1.85 5.79 -4.98 -0.03 1.83 16 10 N -0.68 -15.42 6.48 -116.34 -0.75 -16.17 16 11 C 0.19 5.21 5.44 -4.98 -0.03 5.18 16 12 C -0.51 -14.94 9.32 -34.44 -0.32 -15.26 16 13 H 0.06 1.77 7.81 -52.48 -0.41 1.36 16 14 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 15 N -0.90 -27.31 13.29 55.43 0.74 -26.58 16 16 Si 0.90 22.10 29.54 -169.99 -5.02 17.08 16 17 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 20 C -0.07 -1.10 9.67 -39.65 -0.38 -1.49 16 21 C -0.10 -1.55 6.35 -105.14 -0.67 -2.21 16 22 C -0.17 -2.19 6.31 -102.71 -0.65 -2.84 16 23 C -0.08 -0.78 10.17 36.00 0.37 -0.41 16 24 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 26 H 0.08 0.49 7.04 -51.93 -0.37 0.13 16 27 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 28 H 0.13 1.83 8.06 -52.48 -0.42 1.40 16 29 H 0.07 1.33 8.08 -51.93 -0.42 0.91 16 30 H 0.03 0.48 8.08 -51.93 -0.42 0.07 16 31 H 0.33 7.24 8.71 -39.29 -0.34 6.90 16 32 H 0.03 0.81 8.14 -51.92 -0.42 0.39 16 33 H -0.01 -0.39 8.14 -51.93 -0.42 -0.81 16 34 H 0.26 7.49 8.31 -40.82 -0.34 7.16 16 35 H 0.12 1.78 8.06 -52.49 -0.42 1.35 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.06 0.49 7.06 -51.93 -0.37 0.12 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 321.91 15.07 4.85 4.85 Total: -1.00 -32.68 321.91 -9.83 -42.52 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -5.63 Total: 3.86 kcal Atomic # 6 Polarization: -14.98 SS G_CDS: -3.97 Total: -18.95 kcal Atomic # 7 Polarization: -49.29 SS G_CDS: -0.06 Total: -49.35 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -32.68 -9.83 -42.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564846666.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.927 kcal (2) G-P(sol) polarization free energy of solvation -32.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds