Wall clock time and date at job start Mon Mar 30 2020 07:14:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.36830 * 125.03578 * 2 1 4 4 H 0.96999 * 125.06411 * 0.04912 * 3 2 1 5 5 C 1.37682 * 109.87408 * 180.02562 * 3 2 1 6 6 C 1.39127 * 133.50970 * 179.97438 * 5 3 2 7 7 C 1.37750 * 119.77767 * 180.02562 * 6 5 3 8 8 C 1.38836 * 120.66954 * 359.97438 * 7 6 5 9 9 C 1.50694 * 119.73663 * 180.28176 * 8 7 6 10 10 N 1.46904 * 109.47210 * 269.73008 * 9 8 7 11 11 C 1.46900 * 110.99971 * 180.02562 * 10 9 8 12 12 C 1.50699 * 109.47007 * 179.97438 * 11 10 9 13 13 H 1.08003 * 120.00200 * 359.97438 * 12 11 10 14 14 C 1.37882 * 120.00226 * 179.97438 * 12 11 10 15 15 N 1.31513 * 119.99511 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00157 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.47104 * 60.00485 * 16 14 12 18 18 H 1.48495 * 109.47194 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47332 * 300.00411 * 16 14 12 20 20 C 1.36625 * 120.52332 * 0.02562 * 8 7 6 21 21 C 1.39628 * 119.76801 * 359.97438 * 20 8 7 22 22 C 1.34234 * 125.03312 * 180.02562 * 2 1 3 23 23 C 1.50698 * 126.50338 * 359.92943 * 22 2 1 24 24 H 1.09007 * 109.47105 * 269.96781 * 1 2 3 25 25 H 1.09005 * 109.47001 * 29.95980 * 1 2 3 26 26 H 1.08995 * 109.47311 * 149.96276 * 1 2 3 27 27 H 1.08001 * 120.11448 * 0.04500 * 6 5 3 28 28 H 1.08006 * 119.66656 * 180.02562 * 7 6 5 29 29 H 1.09006 * 109.47212 * 29.72296 * 9 8 7 30 30 H 1.09002 * 109.47354 * 149.73193 * 9 8 7 31 31 H 1.00902 * 110.99664 * 303.95522 * 10 9 8 32 32 H 1.09007 * 109.46757 * 299.99417 * 11 10 9 33 33 H 1.08991 * 109.47415 * 59.99358 * 11 10 9 34 34 H 0.97001 * 119.99399 * 180.02562 * 15 14 12 35 35 H 1.08000 * 120.11591 * 179.97438 * 20 8 7 36 36 H 1.09001 * 109.47616 * 270.04413 * 23 22 2 37 37 H 1.09005 * 109.46835 * 30.04289 * 23 22 2 38 38 H 1.08999 * 109.47133 * 150.03641 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2925 1.1204 0.0000 4 1 1.9624 2.0324 0.0007 5 6 3.6214 0.7603 -0.0006 6 6 4.8099 1.4836 -0.0013 7 6 6.0159 0.8180 -0.0023 8 6 6.0589 -0.5696 -0.0021 9 6 7.3899 -1.2762 0.0033 10 7 7.8249 -1.5116 -1.3800 11 6 9.1218 -2.2008 -1.4140 12 6 9.5341 -2.4251 -2.8460 13 1 8.8963 -2.0895 -3.6505 14 6 10.7255 -3.0586 -3.1293 15 7 11.5018 -3.4676 -2.1497 16 14 11.2362 -3.3371 -4.9044 17 1 11.3521 -2.0288 -5.5973 18 1 12.5472 -4.0338 -4.9388 19 1 10.2152 -4.1707 -5.5883 20 6 4.9041 -1.2997 -0.0014 21 6 3.6705 -0.6456 -0.0004 22 6 2.2776 -1.0991 -0.0005 23 6 1.8003 -2.5285 0.0004 24 1 -0.3634 -0.0006 1.0277 25 1 -0.3633 0.8904 -0.5132 26 1 -0.3634 -0.8896 -0.5144 27 1 4.7870 2.5634 -0.0007 28 1 6.9374 1.3814 -0.0024 29 1 8.1273 -0.6582 0.5157 30 1 7.2927 -2.2305 0.5209 31 1 7.1278 -2.0279 -1.8954 32 1 9.8713 -1.5896 -0.9112 33 1 9.0361 -3.1614 -0.9062 34 1 12.3402 -3.9129 -2.3491 35 1 4.9452 -2.3789 -0.0016 36 1 1.6855 -2.8727 1.0282 37 1 0.8409 -2.5915 -0.5132 38 1 2.5292 -3.1553 -0.5135 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000564846666.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:25 Heat of formation + Delta-G solvation = 18.662011 kcal Electronic energy + Delta-G solvation = -18024.615852 eV Core-core repulsion = 15251.519089 eV Total energy + Delta-G solvation = -2773.096763 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.24406 -38.83926 -36.61250 -34.59649 -34.02085 -32.00869 -31.34473 -29.47704 -28.17159 -26.76615 -25.51110 -23.46248 -22.58942 -21.89246 -19.93700 -18.62353 -18.50984 -17.13546 -16.61861 -16.22694 -15.94571 -15.86427 -15.20382 -14.96284 -14.62891 -14.41032 -14.00814 -13.72877 -13.65322 -13.51123 -13.43891 -13.11106 -12.96269 -12.81806 -12.63688 -12.58892 -12.25064 -12.07636 -11.85019 -11.65623 -11.30264 -10.65823 -10.41224 -9.18387 -8.94226 -8.42959 -8.22020 -6.33929 0.22069 0.65078 1.41233 1.45372 1.53473 1.73583 2.22846 2.40646 2.91149 3.10546 3.66007 3.85314 3.88867 4.01687 4.18631 4.32457 4.35464 4.47973 4.51720 4.65004 4.72727 4.75856 4.92600 4.97402 4.97813 5.05092 5.08143 5.13706 5.20461 5.25394 5.32091 5.54093 5.60589 5.79301 5.85712 5.94240 6.01333 6.25942 6.44108 6.69152 6.76913 6.87072 7.36790 8.89207 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.032098 B = 0.003619 C = 0.003487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.109468 B = 7736.105548 C = 8028.196558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.082 3.918 3 N -0.585 5.585 4 H 0.427 0.573 5 C 0.081 3.919 6 C -0.127 4.127 7 C -0.092 4.092 8 C -0.105 4.105 9 C 0.104 3.896 10 N -0.682 5.682 11 C 0.208 3.792 12 C -0.538 4.538 13 H 0.063 0.937 14 C 0.001 3.999 15 N -0.934 5.934 16 Si 0.975 3.025 17 H -0.268 1.268 18 H -0.281 1.281 19 H -0.266 1.266 20 C -0.081 4.081 21 C -0.125 4.125 22 C -0.206 4.206 23 C -0.073 4.073 24 H 0.090 0.910 25 H 0.084 0.916 26 H 0.094 0.906 27 H 0.146 0.854 28 H 0.130 0.870 29 H 0.069 0.931 30 H 0.023 0.977 31 H 0.332 0.668 32 H 0.003 0.997 33 H -0.038 1.038 34 H 0.266 0.734 35 H 0.113 0.887 36 H 0.066 0.934 37 H 0.082 0.918 38 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.190 8.737 5.801 26.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.026 4.026 3 N -0.190 5.190 4 H 0.267 0.733 5 C -0.027 4.027 6 C -0.147 4.147 7 C -0.111 4.111 8 C -0.107 4.107 9 C -0.025 4.025 10 N -0.312 5.312 11 C 0.080 3.920 12 C -0.576 4.576 13 H 0.081 0.919 14 C -0.197 4.197 15 N -0.574 5.574 16 Si 0.799 3.201 17 H -0.193 1.193 18 H -0.206 1.206 19 H -0.191 1.191 20 C -0.101 4.101 21 C -0.129 4.129 22 C -0.213 4.213 23 C -0.130 4.130 24 H 0.108 0.892 25 H 0.103 0.897 26 H 0.113 0.887 27 H 0.164 0.836 28 H 0.148 0.852 29 H 0.087 0.913 30 H 0.041 0.959 31 H 0.149 0.851 32 H 0.021 0.979 33 H -0.021 1.021 34 H 0.075 0.925 35 H 0.131 0.869 36 H 0.085 0.915 37 H 0.101 0.899 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -23.817 9.391 5.779 26.246 hybrid contribution 0.707 -0.820 -0.305 1.125 sum -23.110 8.572 5.474 25.249 Atomic orbital electron populations 1.20590 0.84748 1.04945 1.04264 1.20634 0.94851 0.84785 1.02358 1.41635 1.02992 1.08930 1.65416 0.73330 1.18333 0.85670 0.93892 1.04765 1.20200 0.88847 1.00063 1.05624 1.20831 0.97742 0.93300 0.99271 1.19279 0.93613 0.94395 1.03418 1.20787 0.93606 0.97586 0.90529 1.60628 1.05056 1.53336 1.12185 1.19238 0.86741 0.89923 0.96103 1.21510 1.05533 1.37620 0.92986 0.91906 1.25975 0.96230 0.94947 1.02534 1.70088 1.12842 1.40565 1.33908 0.85354 0.77458 0.78644 0.78650 1.19285 1.20571 1.19100 1.20154 0.90563 0.99240 1.00103 1.19361 0.93693 0.92985 1.06889 1.20390 0.89948 0.96463 1.14451 1.20115 1.01168 0.89824 1.01936 0.89153 0.89728 0.88739 0.83631 0.85189 0.91277 0.95870 0.85104 0.97914 1.02084 0.92525 0.86853 0.91520 0.89887 0.93099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.82 10.18 71.24 0.72 -0.09 16 2 C 0.08 1.53 7.08 40.87 0.29 1.82 16 3 N -0.58 -11.22 6.07 -175.91 -1.07 -12.28 16 4 H 0.43 5.14 8.96 -92.71 -0.83 4.30 16 5 C 0.08 2.15 7.28 39.03 0.28 2.43 16 6 C -0.13 -3.31 10.08 22.37 0.23 -3.08 16 7 C -0.09 -2.83 9.66 22.30 0.22 -2.62 16 8 C -0.11 -3.66 5.36 -20.10 -0.11 -3.77 16 9 C 0.10 4.12 5.79 85.55 0.50 4.62 16 10 N -0.68 -32.01 6.48 -521.98 -3.38 -35.39 16 11 C 0.21 11.72 5.44 85.56 0.47 12.19 16 12 C -0.54 -32.01 9.32 25.60 0.24 -31.77 16 13 H 0.06 3.64 7.81 -2.91 -0.02 3.62 16 14 C 0.00 0.08 5.46 84.66 0.46 0.54 16 15 N -0.93 -57.81 13.29 21.45 0.28 -57.52 16 16 Si 0.98 45.38 29.54 68.60 2.03 47.40 16 17 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 18 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 19 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 20 C -0.08 -2.69 9.67 22.23 0.22 -2.48 16 21 C -0.12 -3.75 6.35 -20.20 -0.13 -3.88 16 22 C -0.21 -4.98 6.31 -18.63 -0.12 -5.10 16 23 C -0.07 -1.41 10.17 71.24 0.72 -0.69 16 24 H 0.09 0.63 8.14 -2.38 -0.02 0.61 16 25 H 0.08 0.50 8.14 -2.38 -0.02 0.48 16 26 H 0.09 0.72 7.04 -2.39 -0.02 0.71 16 27 H 0.15 2.82 8.06 -2.91 -0.02 2.79 16 28 H 0.13 3.80 8.06 -2.91 -0.02 3.78 16 29 H 0.07 2.73 8.08 -2.38 -0.02 2.71 16 30 H 0.02 0.92 8.08 -2.39 -0.02 0.90 16 31 H 0.33 15.19 8.71 -89.69 -0.78 14.41 16 32 H 0.00 0.17 8.14 -2.38 -0.02 0.15 16 33 H -0.04 -2.32 8.14 -2.39 -0.02 -2.34 16 34 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 35 H 0.11 3.67 8.06 -2.91 -0.02 3.64 16 36 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.08 1.16 7.06 -2.38 -0.02 1.14 16 38 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -71.64 321.91 1.30 -70.34 By element: Atomic # 1 Polarization: 19.87 SS G_CDS: -0.54 Total: 19.32 kcal Atomic # 6 Polarization: -35.85 SS G_CDS: 3.99 Total: -31.87 kcal Atomic # 7 Polarization: -101.03 SS G_CDS: -4.17 Total: -105.20 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.40 kcal Total: -71.64 1.30 -70.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564846666.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.001 kcal (2) G-P(sol) polarization free energy of solvation -71.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds