Wall clock time and date at job start Mon Mar 30 2020 07:50:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30853 * 1 3 3 Si 1.86803 * 120.00141 * 2 1 4 4 H 1.48498 * 109.46759 * 90.00747 * 3 2 1 5 5 H 1.48501 * 109.46943 * 210.00334 * 3 2 1 6 6 H 1.48501 * 109.47091 * 330.00556 * 3 2 1 7 7 C 1.39921 * 119.99731 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00217 * 17.75814 * 7 2 1 9 9 C 1.41297 * 119.99483 * 197.76199 * 7 2 1 10 10 C 1.40642 * 120.22552 * 28.68585 * 9 7 2 11 11 C 1.38162 * 119.72823 * 179.97438 * 10 9 7 12 12 N 1.39779 * 119.91460 * 179.97438 * 11 10 9 13 13 C 1.39406 * 120.17907 * 359.97438 * 11 10 9 14 14 C 1.38446 * 120.45218 * 0.02562 * 13 11 10 15 15 Br 1.89094 * 119.86128 * 179.97438 * 14 13 11 16 16 C 1.38096 * 120.27085 * 359.73031 * 14 13 11 17 17 F 1.35103 * 120.09244 * 180.25318 * 16 14 13 18 18 H 0.96998 * 120.00065 * 175.43948 * 1 2 3 19 19 H 1.08001 * 120.13805 * 359.95290 * 10 9 7 20 20 H 0.96997 * 119.99867 * 359.97438 * 12 11 10 21 21 H 0.97001 * 120.00401 * 179.97438 * 12 11 10 22 22 H 1.08000 * 119.77180 * 179.97438 * 13 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2426 1.6177 0.0000 4 1 2.4902 2.0462 1.4001 5 1 3.5401 1.4401 -0.7001 6 1 1.4400 2.6527 -0.6999 7 6 2.0081 -1.2118 -0.0005 8 1 1.5067 -2.1247 -0.2862 9 6 3.3705 -1.2411 0.3728 10 6 3.8771 -0.2916 1.2783 11 6 5.2108 -0.3301 1.6367 12 7 5.7185 0.6119 2.5359 13 6 6.0518 -1.3059 1.1037 14 6 5.5611 -2.2441 0.2117 15 35 6.7168 -3.5599 -0.5015 16 6 4.2299 -2.2260 -0.1554 17 9 3.7537 -3.1464 -1.0222 18 1 -0.4850 -0.8374 -0.0668 19 1 3.2262 0.4646 1.6917 20 1 5.1346 1.2917 2.9073 21 1 6.6546 0.5859 2.7887 22 1 7.0934 -1.3296 1.3881 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575713728.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:50:20 Heat of formation + Delta-G solvation = -36.913591 kcal Electronic energy + Delta-G solvation = -12011.699149 eV Core-core repulsion = 9526.486755 eV Total energy + Delta-G solvation = -2485.212394 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 258.970 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -47.40560 -38.08016 -34.37773 -33.28424 -31.32516 -29.04064 -27.11695 -25.12334 -21.68384 -20.45321 -18.38354 -16.49623 -16.46963 -15.61457 -14.47801 -14.29911 -14.08109 -13.32576 -13.12132 -12.42743 -12.11698 -11.92173 -11.52392 -10.97434 -10.69984 -10.45408 -9.93779 -9.71328 -9.61739 -9.39363 -8.88992 -7.92876 -7.46351 -6.70171 -4.74903 2.17161 2.35900 2.49224 3.08258 3.27276 3.46699 3.89886 4.30578 4.52781 5.11341 5.55016 6.09719 6.15249 6.43811 6.69617 7.06333 7.13858 7.29216 7.37399 7.47632 7.96466 8.21870 8.32105 8.38791 8.54523 9.83507 Molecular weight = 258.97amu Principal moments of inertia in cm(-1) A = 0.031793 B = 0.009356 C = 0.007606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.488609 B = 2992.126159 C = 3680.453240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.802 5.802 2 C 0.043 3.957 3 Si 1.080 2.920 4 H -0.277 1.277 5 H -0.261 1.261 6 H -0.289 1.289 7 C -0.494 4.494 8 H 0.084 0.916 9 C 0.108 3.892 10 C -0.296 4.296 11 C 0.250 3.750 12 N -0.886 5.886 13 C -0.271 4.271 14 C -0.033 4.033 15 Br -0.084 7.084 16 C -0.026 4.026 17 F -0.148 7.148 18 H 0.290 0.710 19 H 0.117 0.883 20 H 0.392 0.608 21 H 0.390 0.610 22 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.998 -0.329 1.910 10.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.178 4.178 3 Si 0.906 3.094 4 H -0.204 1.204 5 H -0.185 1.185 6 H -0.216 1.216 7 C -0.522 4.522 8 H 0.102 0.898 9 C 0.103 3.897 10 C -0.320 4.320 11 C 0.147 3.853 12 N -0.426 5.426 13 C -0.296 4.296 14 C -0.114 4.114 15 Br 0.001 6.999 16 C -0.049 4.049 17 F -0.127 7.127 18 H 0.101 0.899 19 H 0.135 0.865 20 H 0.220 0.780 21 H 0.217 0.783 22 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 10.055 0.672 1.594 10.202 hybrid contribution -0.135 -1.467 0.277 1.499 sum 9.919 -0.795 1.872 10.126 Atomic orbital electron populations 1.70539 1.08005 1.33400 1.30400 1.27398 0.95631 1.04568 0.90187 0.83489 0.75648 0.72588 0.77710 1.20426 1.18502 1.21605 1.20637 0.94421 0.97373 1.39760 0.89757 1.17368 0.92856 0.89542 0.89962 1.20424 0.94072 1.08322 1.09170 1.17318 0.91911 0.87895 0.88214 1.42372 1.12730 1.35422 1.52090 1.19501 0.98895 1.01801 1.09383 1.21153 0.91546 0.96869 1.01815 1.96479 1.64013 1.53868 1.85531 1.17360 0.90451 0.96819 1.00258 1.91330 1.88834 1.64595 1.67918 0.89885 0.86519 0.78035 0.78329 0.87100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.91 13.66 55.55 0.76 -20.15 14 2 C 0.04 1.10 5.42 -17.34 -0.09 1.01 14 3 Si 1.08 23.42 24.90 -169.99 -4.23 19.19 14 4 H -0.28 -5.52 6.43 56.52 0.36 -5.16 14 5 H -0.26 -5.70 7.03 56.52 0.40 -5.30 14 6 H -0.29 -6.10 7.11 56.52 0.40 -5.70 14 7 C -0.49 -13.21 9.13 -37.79 -0.35 -13.55 14 8 H 0.08 2.37 7.95 -52.49 -0.42 1.95 14 9 C 0.11 2.76 5.14 -106.79 -0.55 2.21 14 10 C -0.30 -6.78 7.11 -38.70 -0.28 -7.05 14 11 C 0.25 5.06 6.74 -83.83 -0.57 4.50 14 12 N -0.89 -13.59 9.09 32.38 0.29 -13.30 14 13 C -0.27 -5.51 9.63 -39.07 -0.38 -5.88 14 14 C -0.03 -0.73 6.22 -39.56 -0.25 -0.98 14 15 Br -0.08 -1.57 33.26 -68.01 -2.26 -3.83 14 16 C -0.03 -0.64 7.27 -38.59 -0.28 -0.92 14 17 F -0.15 -3.73 16.20 2.25 0.04 -3.69 14 18 H 0.29 7.36 8.73 -40.82 -0.36 7.01 14 19 H 0.12 2.60 4.38 -52.49 -0.23 2.37 14 20 H 0.39 5.40 8.84 -40.82 -0.36 5.04 14 21 H 0.39 4.86 8.84 -40.82 -0.36 4.49 14 22 H 0.11 1.98 8.06 -52.49 -0.42 1.56 14 LS Contribution 221.12 15.07 3.33 3.33 Total: -1.00 -27.05 221.12 -5.79 -32.84 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: -0.99 Total: 6.27 kcal Atomic # 6 Polarization: -17.93 SS G_CDS: -2.73 Total: -20.66 kcal Atomic # 7 Polarization: -34.50 SS G_CDS: 1.05 Total: -33.45 kcal Atomic # 9 Polarization: -3.73 SS G_CDS: 0.04 Total: -3.69 kcal Atomic # 14 Polarization: 23.42 SS G_CDS: -4.23 Total: 19.19 kcal Atomic # 35 Polarization: -1.57 SS G_CDS: -2.26 Total: -3.83 kcal Total LS contribution 3.33 Total: 3.33 kcal Total: -27.05 -5.79 -32.84 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575713728.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.070 kcal (2) G-P(sol) polarization free energy of solvation -27.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds