Wall clock time and date at job start Mon Mar 30 2020 07:50:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30853 * 1 3 3 Si 1.86803 * 120.00141 * 2 1 4 4 H 1.48498 * 109.46759 * 90.00747 * 3 2 1 5 5 H 1.48501 * 109.46943 * 210.00334 * 3 2 1 6 6 H 1.48501 * 109.47091 * 330.00556 * 3 2 1 7 7 C 1.39921 * 119.99731 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00217 * 17.75814 * 7 2 1 9 9 C 1.41297 * 119.99483 * 197.76199 * 7 2 1 10 10 C 1.40642 * 120.22552 * 28.68585 * 9 7 2 11 11 C 1.38162 * 119.72823 * 179.97438 * 10 9 7 12 12 N 1.39779 * 119.91460 * 179.97438 * 11 10 9 13 13 C 1.39406 * 120.17907 * 359.97438 * 11 10 9 14 14 C 1.38446 * 120.45218 * 0.02562 * 13 11 10 15 15 Br 1.89094 * 119.86128 * 179.97438 * 14 13 11 16 16 C 1.38096 * 120.27085 * 359.73031 * 14 13 11 17 17 F 1.35103 * 120.09244 * 180.25318 * 16 14 13 18 18 H 0.96998 * 120.00065 * 175.43948 * 1 2 3 19 19 H 1.08001 * 120.13805 * 359.95290 * 10 9 7 20 20 H 0.96997 * 119.99867 * 359.97438 * 12 11 10 21 21 H 0.97001 * 120.00401 * 179.97438 * 12 11 10 22 22 H 1.08000 * 119.77180 * 179.97438 * 13 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2426 1.6177 0.0000 4 1 2.4902 2.0462 1.4001 5 1 3.5401 1.4401 -0.7001 6 1 1.4400 2.6527 -0.6999 7 6 2.0081 -1.2118 -0.0005 8 1 1.5067 -2.1247 -0.2862 9 6 3.3705 -1.2411 0.3728 10 6 3.8771 -0.2916 1.2783 11 6 5.2108 -0.3301 1.6367 12 7 5.7185 0.6119 2.5359 13 6 6.0518 -1.3059 1.1037 14 6 5.5611 -2.2441 0.2117 15 35 6.7168 -3.5599 -0.5015 16 6 4.2299 -2.2260 -0.1554 17 9 3.7537 -3.1464 -1.0222 18 1 -0.4850 -0.8374 -0.0668 19 1 3.2262 0.4646 1.6917 20 1 5.1346 1.2917 2.9073 21 1 6.6546 0.5859 2.7887 22 1 7.0934 -1.3296 1.3881 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575713728.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:50:20 Heat of formation + Delta-G solvation = -54.968987 kcal Electronic energy + Delta-G solvation = -12012.482090 eV Core-core repulsion = 9526.486755 eV Total energy + Delta-G solvation = -2485.995335 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 258.970 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -49.29502 -39.80677 -36.15697 -34.90796 -33.09450 -30.71107 -28.78480 -26.97341 -23.45788 -22.18985 -20.24988 -18.28697 -18.05882 -17.22387 -16.30522 -15.98442 -15.82096 -15.13004 -14.94599 -14.16079 -13.80790 -13.65836 -13.30434 -12.71622 -12.33994 -12.09904 -11.76251 -11.50586 -11.20972 -11.10063 -10.59166 -9.72582 -9.38486 -8.29009 -6.72793 0.40192 0.67352 0.70476 1.35034 1.56058 1.78660 2.15455 2.50280 3.13862 3.26322 3.79016 4.38673 4.41745 4.72791 4.95763 5.34658 5.36974 5.44670 5.55711 5.63787 6.14649 6.31922 6.60800 6.75830 7.19456 7.88636 Molecular weight = 258.97amu Principal moments of inertia in cm(-1) A = 0.031793 B = 0.009356 C = 0.007606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.488609 B = 2992.126159 C = 3680.453240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.829 5.829 2 C 0.013 3.987 3 Si 1.110 2.890 4 H -0.242 1.242 5 H -0.263 1.263 6 H -0.282 1.282 7 C -0.535 4.535 8 H 0.045 0.955 9 C 0.093 3.907 10 C -0.300 4.300 11 C 0.259 3.741 12 N -0.862 5.862 13 C -0.250 4.250 14 C -0.040 4.040 15 Br -0.050 7.050 16 C -0.069 4.069 17 F -0.162 7.162 18 H 0.279 0.721 19 H 0.124 0.876 20 H 0.405 0.595 21 H 0.410 0.590 22 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.104 1.127 3.364 13.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.201 4.201 3 Si 0.929 3.071 4 H -0.167 1.167 5 H -0.188 1.188 6 H -0.209 1.209 7 C -0.564 4.564 8 H 0.063 0.937 9 C 0.088 3.912 10 C -0.325 4.325 11 C 0.152 3.848 12 N -0.403 5.403 13 C -0.275 4.275 14 C -0.121 4.121 15 Br 0.035 6.965 16 C -0.092 4.092 17 F -0.141 7.141 18 H 0.090 0.910 19 H 0.142 0.858 20 H 0.234 0.766 21 H 0.240 0.760 22 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 13.189 2.136 3.095 13.715 hybrid contribution -0.810 -2.029 -0.111 2.187 sum 12.380 0.108 2.984 12.735 Atomic orbital electron populations 1.70610 1.08531 1.32679 1.33360 1.28537 0.95718 1.06870 0.88999 0.83179 0.74527 0.69702 0.79707 1.16671 1.18792 1.20860 1.20514 0.95838 0.96675 1.43418 0.93709 1.17560 0.92399 0.90736 0.90462 1.20563 0.95540 1.07757 1.08633 1.17362 0.90919 0.88360 0.88144 1.42289 1.14088 1.33946 1.49974 1.20008 1.00437 1.00002 1.07011 1.21434 0.91194 0.97801 1.01637 1.96497 1.62086 1.52681 1.85263 1.17666 0.91937 0.97699 1.01923 1.91279 1.89214 1.65097 1.68527 0.91024 0.85836 0.76569 0.76004 0.83542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -45.15 13.66 21.82 0.30 -44.86 14 2 C 0.01 0.71 5.42 85.25 0.46 1.17 14 3 Si 1.11 46.26 24.90 68.60 1.71 47.97 14 4 H -0.24 -8.63 6.43 99.48 0.64 -7.99 14 5 H -0.26 -10.98 7.03 99.48 0.70 -10.29 14 6 H -0.28 -11.34 7.11 99.48 0.71 -10.63 14 7 C -0.54 -30.15 9.13 23.43 0.21 -29.93 14 8 H 0.04 2.76 7.95 -2.91 -0.02 2.73 14 9 C 0.09 4.80 5.14 -21.27 -0.11 4.69 14 10 C -0.30 -13.14 7.11 22.84 0.16 -12.98 14 11 C 0.26 9.40 6.74 38.14 0.26 9.66 14 12 N -0.86 -21.60 9.09 -51.45 -0.47 -22.07 14 13 C -0.25 -9.08 9.63 22.60 0.22 -8.86 14 14 C -0.04 -1.67 6.22 22.29 0.14 -1.53 14 15 Br -0.05 -1.76 33.26 -20.37 -0.68 -2.44 14 16 C -0.07 -3.44 7.27 22.91 0.17 -3.27 14 17 F -0.16 -8.46 16.20 44.97 0.73 -7.73 14 18 H 0.28 15.22 8.73 -92.71 -0.81 14.41 14 19 H 0.12 5.17 4.38 -2.91 -0.01 5.16 14 20 H 0.40 8.85 8.84 -92.71 -0.82 8.03 14 21 H 0.41 7.59 8.84 -92.71 -0.82 6.77 14 22 H 0.15 4.31 8.06 -2.91 -0.02 4.29 14 Total: -1.00 -60.33 221.12 2.64 -57.70 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: -0.46 Total: 12.48 kcal Atomic # 6 Polarization: -42.56 SS G_CDS: 1.51 Total: -41.05 kcal Atomic # 7 Polarization: -66.75 SS G_CDS: -0.17 Total: -66.92 kcal Atomic # 9 Polarization: -8.46 SS G_CDS: 0.73 Total: -7.73 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 1.71 Total: 47.97 kcal Atomic # 35 Polarization: -1.76 SS G_CDS: -0.68 Total: -2.44 kcal Total: -60.33 2.64 -57.70 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575713728.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.728 kcal (2) G-P(sol) polarization free energy of solvation -60.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds