Wall clock time and date at job start Mon Mar 30 2020 07:52:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30924 * 1 3 3 Si 1.86803 * 119.99788 * 2 1 4 4 H 1.48508 * 109.47142 * 359.97438 * 3 2 1 5 5 H 1.48499 * 109.47063 * 120.00124 * 3 2 1 6 6 H 1.48501 * 109.47189 * 240.00272 * 3 2 1 7 7 C 1.39889 * 120.00395 * 180.27251 * 2 1 3 8 8 H 1.08002 * 119.99957 * 164.23066 * 7 2 1 9 9 C 1.40972 * 119.99644 * 344.23919 * 7 2 1 10 10 C 1.41607 * 120.28516 * 313.78369 * 9 7 2 11 11 N 1.38794 * 120.26922 * 359.97438 * 10 9 7 12 12 C 1.38543 * 119.46389 * 180.02562 * 10 9 7 13 13 C 1.38538 * 120.02659 * 0.02562 * 12 10 9 14 14 F 1.35102 * 119.70695 * 179.97438 * 13 12 10 15 15 C 1.39088 * 120.58034 * 359.97438 * 13 12 10 16 16 C 1.36535 * 120.54598 * 359.70980 * 15 13 12 17 17 Br 1.89101 * 120.02741 * 180.28356 * 16 15 13 18 18 H 0.96997 * 119.99891 * 355.96899 * 1 2 3 19 19 H 0.97000 * 119.99636 * 359.97438 * 11 10 9 20 20 H 0.97001 * 120.00471 * 179.97438 * 11 10 9 21 21 H 1.08001 * 119.98451 * 180.02562 * 12 10 9 22 22 H 1.07998 * 119.72718 * 179.97438 * 15 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3092 0.0000 0.0000 3 14 2.2432 1.6178 0.0000 4 1 1.2781 2.7465 -0.0006 5 1 3.0970 1.6965 1.2125 6 1 3.0969 1.6965 -1.2125 7 6 2.0088 -1.2114 -0.0058 8 1 3.0583 -1.2277 -0.2600 9 6 1.3437 -2.4109 0.3202 10 6 0.4954 -2.4722 1.4524 11 7 0.3123 -1.3518 2.2509 12 6 -0.1494 -3.6599 1.7573 13 6 0.0381 -4.7756 0.9577 14 9 -0.5935 -5.9307 1.2613 15 6 0.8710 -4.7171 -0.1547 16 6 1.5130 -3.5570 -0.4806 17 35 2.6356 -3.4916 -2.0009 18 1 -0.4850 0.8380 0.0591 19 1 0.7667 -0.5225 2.0344 20 1 -0.2699 -1.3980 3.0254 21 1 -0.7986 -3.7159 2.6186 22 1 1.0076 -5.5953 -0.7682 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575713736.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:52:23 Heat of formation + Delta-G solvation = -28.589979 kcal Electronic energy + Delta-G solvation = -12057.718510 eV Core-core repulsion = 9572.867055 eV Total energy + Delta-G solvation = -2484.851455 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 258.970 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -47.70948 -38.03385 -34.00339 -32.85273 -30.40478 -28.89159 -27.48167 -24.82767 -20.96771 -20.91341 -17.59108 -16.41888 -16.15428 -15.17904 -14.44490 -14.33784 -14.00905 -13.66365 -12.56304 -12.42433 -11.98308 -11.85403 -11.29197 -11.07735 -10.66531 -10.27546 -10.21356 -9.89635 -9.15292 -8.97105 -8.85133 -7.37979 -6.84826 -6.34986 -4.43806 2.39721 2.71372 3.00249 3.03188 3.05132 3.07582 3.90358 4.44879 5.08720 5.20682 5.69160 6.02961 6.27668 6.69306 6.85032 7.00644 7.20013 7.30776 7.52775 7.91615 8.23928 8.38864 8.73555 8.84491 9.02086 10.17212 Molecular weight = 258.97amu Principal moments of inertia in cm(-1) A = 0.020257 B = 0.013080 C = 0.008284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.940395 B = 2140.190327 C = 3379.245750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.799 5.799 2 C 0.069 3.931 3 Si 0.897 3.103 4 H -0.280 1.280 5 H -0.265 1.265 6 H -0.263 1.263 7 C -0.468 4.468 8 H 0.087 0.913 9 C 0.085 3.915 10 C 0.222 3.778 11 N -0.850 5.850 12 C -0.228 4.228 13 C 0.042 3.958 14 F -0.164 7.164 15 C -0.157 4.157 16 C -0.115 4.115 17 Br -0.086 7.086 18 H 0.280 0.720 19 H 0.401 0.599 20 H 0.377 0.623 21 H 0.107 0.893 22 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.350 -1.357 0.366 2.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C -0.146 4.146 3 Si 0.722 3.278 4 H -0.205 1.205 5 H -0.190 1.190 6 H -0.188 1.188 7 C -0.500 4.500 8 H 0.105 0.895 9 C 0.078 3.922 10 C 0.114 3.886 11 N -0.389 5.389 12 C -0.254 4.254 13 C 0.020 3.980 14 F -0.144 7.144 15 C -0.180 4.180 16 C -0.197 4.197 17 Br -0.002 7.002 18 H 0.091 0.909 19 H 0.234 0.766 20 H 0.202 0.798 21 H 0.125 0.875 22 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 2.568 -1.198 -0.290 2.848 hybrid contribution -0.240 0.887 0.570 1.082 sum 2.328 -0.311 0.280 2.365 Atomic orbital electron populations 1.69909 1.06926 1.29468 1.36399 1.25724 0.94691 1.00578 0.93593 0.86513 0.80294 0.80765 0.80249 1.20477 1.18965 1.18756 1.19162 0.97618 0.90171 1.43027 0.89475 1.17019 0.92915 0.92440 0.89838 1.17580 0.95055 0.85945 0.90009 1.42184 1.53999 1.12522 1.30155 1.20011 1.08590 0.92917 1.03844 1.16816 1.00652 0.81734 0.98761 1.91322 1.81437 1.48239 1.93375 1.19947 1.01684 0.97771 0.98560 1.20885 1.05664 0.97366 0.95783 1.96318 1.65955 1.99176 1.38727 0.90932 0.76635 0.79775 0.87453 0.87251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -19.30 11.35 55.55 0.63 -18.67 14 2 C 0.07 1.60 3.51 -17.32 -0.06 1.54 14 3 Si 0.90 17.68 29.59 -169.99 -5.03 12.65 14 4 H -0.28 -5.43 7.11 56.52 0.40 -5.03 14 5 H -0.26 -5.10 7.11 56.52 0.40 -4.70 14 6 H -0.26 -5.31 7.11 56.52 0.40 -4.91 14 7 C -0.47 -11.48 7.65 -37.93 -0.29 -11.77 14 8 H 0.09 2.14 7.63 -52.49 -0.40 1.73 14 9 C 0.08 2.10 5.26 -106.60 -0.56 1.54 14 10 C 0.22 5.17 6.25 -83.31 -0.52 4.65 14 11 N -0.85 -17.42 8.02 32.71 0.26 -17.16 14 12 C -0.23 -5.07 9.85 -39.36 -0.39 -5.45 14 13 C 0.04 0.94 7.31 -39.16 -0.29 0.66 14 14 F -0.16 -3.55 17.26 2.25 0.04 -3.51 14 15 C -0.16 -3.56 9.67 -39.88 -0.39 -3.94 14 16 C -0.12 -2.73 6.24 -39.22 -0.24 -2.98 14 17 Br -0.09 -1.82 32.48 -68.01 -2.21 -4.02 14 18 H 0.28 6.28 8.30 -40.82 -0.34 5.94 14 19 H 0.40 8.42 5.62 -40.82 -0.23 8.19 14 20 H 0.38 6.52 8.84 -40.82 -0.36 6.15 14 21 H 0.11 2.13 8.06 -52.49 -0.42 1.71 14 22 H 0.11 2.27 8.06 -52.49 -0.42 1.85 14 LS Contribution 222.26 15.07 3.35 3.35 Total: -1.00 -25.51 222.26 -6.66 -32.18 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -0.97 Total: 10.95 kcal Atomic # 6 Polarization: -13.03 SS G_CDS: -2.74 Total: -15.76 kcal Atomic # 7 Polarization: -36.72 SS G_CDS: 0.89 Total: -35.83 kcal Atomic # 9 Polarization: -3.55 SS G_CDS: 0.04 Total: -3.51 kcal Atomic # 14 Polarization: 17.68 SS G_CDS: -5.03 Total: 12.65 kcal Atomic # 35 Polarization: -1.82 SS G_CDS: -2.21 Total: -4.02 kcal Total LS contribution 3.35 Total: 3.35 kcal Total: -25.51 -6.66 -32.18 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575713736.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.586 kcal (2) G-P(sol) polarization free energy of solvation -25.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds