Wall clock time and date at job start Mon Mar 30 2020 07:52:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30924 * 1 3 3 Si 1.86803 * 119.99788 * 2 1 4 4 H 1.48508 * 109.47142 * 359.97438 * 3 2 1 5 5 H 1.48499 * 109.47063 * 120.00124 * 3 2 1 6 6 H 1.48501 * 109.47189 * 240.00272 * 3 2 1 7 7 C 1.39889 * 120.00395 * 180.27251 * 2 1 3 8 8 H 1.08002 * 119.99957 * 164.23066 * 7 2 1 9 9 C 1.40972 * 119.99644 * 344.23919 * 7 2 1 10 10 C 1.41607 * 120.28516 * 313.78369 * 9 7 2 11 11 N 1.38794 * 120.26922 * 359.97438 * 10 9 7 12 12 C 1.38543 * 119.46389 * 180.02562 * 10 9 7 13 13 C 1.38538 * 120.02659 * 0.02562 * 12 10 9 14 14 F 1.35102 * 119.70695 * 179.97438 * 13 12 10 15 15 C 1.39088 * 120.58034 * 359.97438 * 13 12 10 16 16 C 1.36535 * 120.54598 * 359.70980 * 15 13 12 17 17 Br 1.89101 * 120.02741 * 180.28356 * 16 15 13 18 18 H 0.96997 * 119.99891 * 355.96899 * 1 2 3 19 19 H 0.97000 * 119.99636 * 359.97438 * 11 10 9 20 20 H 0.97001 * 120.00471 * 179.97438 * 11 10 9 21 21 H 1.08001 * 119.98451 * 180.02562 * 12 10 9 22 22 H 1.07998 * 119.72718 * 179.97438 * 15 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3092 0.0000 0.0000 3 14 2.2432 1.6178 0.0000 4 1 1.2781 2.7465 -0.0006 5 1 3.0970 1.6965 1.2125 6 1 3.0969 1.6965 -1.2125 7 6 2.0088 -1.2114 -0.0058 8 1 3.0583 -1.2277 -0.2600 9 6 1.3437 -2.4109 0.3202 10 6 0.4954 -2.4722 1.4524 11 7 0.3123 -1.3518 2.2509 12 6 -0.1494 -3.6599 1.7573 13 6 0.0381 -4.7756 0.9577 14 9 -0.5935 -5.9307 1.2613 15 6 0.8710 -4.7171 -0.1547 16 6 1.5130 -3.5570 -0.4806 17 35 2.6356 -3.4916 -2.0009 18 1 -0.4850 0.8380 0.0591 19 1 0.7667 -0.5225 2.0344 20 1 -0.2699 -1.3980 3.0254 21 1 -0.7986 -3.7159 2.6186 22 1 1.0076 -5.5953 -0.7682 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575713736.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:52:23 Heat of formation + Delta-G solvation = -42.661289 kcal Electronic energy + Delta-G solvation = -12058.328688 eV Core-core repulsion = 9572.867055 eV Total energy + Delta-G solvation = -2485.461633 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 258.970 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -49.45309 -39.77657 -35.74992 -34.58364 -32.15200 -30.65473 -29.21300 -26.61690 -22.73104 -22.66848 -19.36708 -18.15372 -17.87146 -16.90907 -16.19116 -16.02025 -15.71349 -15.35763 -14.25799 -14.15537 -13.74286 -13.59469 -12.90588 -12.73485 -12.34759 -11.98019 -11.89203 -11.62946 -10.89100 -10.68488 -10.57075 -9.15437 -8.59711 -8.07849 -6.25908 0.62056 0.94148 1.24542 1.46050 1.47906 1.53967 2.27394 2.69126 3.36326 3.47752 3.95326 4.33323 4.55816 4.95369 5.10724 5.23483 5.43505 5.54650 5.75092 6.17245 6.41892 6.63662 6.94706 7.10705 7.44136 8.43962 Molecular weight = 258.97amu Principal moments of inertia in cm(-1) A = 0.020257 B = 0.013080 C = 0.008284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.940395 B = 2140.190327 C = 3379.245750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.043 3.957 3 Si 0.959 3.041 4 H -0.273 1.273 5 H -0.256 1.256 6 H -0.271 1.271 7 C -0.489 4.489 8 H 0.079 0.921 9 C 0.055 3.945 10 C 0.212 3.788 11 N -0.842 5.842 12 C -0.232 4.232 13 C 0.037 3.963 14 F -0.159 7.159 15 C -0.166 4.166 16 C -0.133 4.133 17 Br -0.069 7.069 18 H 0.286 0.714 19 H 0.399 0.601 20 H 0.392 0.608 21 H 0.129 0.871 22 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.377 -0.816 0.722 2.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.170 4.170 3 Si 0.782 3.218 4 H -0.198 1.198 5 H -0.181 1.181 6 H -0.196 1.196 7 C -0.520 4.520 8 H 0.097 0.903 9 C 0.048 3.952 10 C 0.102 3.898 11 N -0.380 5.380 12 C -0.258 4.258 13 C 0.016 3.984 14 F -0.138 7.138 15 C -0.189 4.189 16 C -0.215 4.215 17 Br 0.016 6.984 18 H 0.096 0.904 19 H 0.231 0.769 20 H 0.220 0.780 21 H 0.147 0.853 22 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 2.584 -0.666 0.088 2.670 hybrid contribution -0.265 0.653 0.441 0.831 sum 2.319 -0.014 0.529 2.379 Atomic orbital electron populations 1.69946 1.08043 1.30540 1.36848 1.26279 0.95191 1.02866 0.92672 0.85573 0.79046 0.77194 0.80010 1.19758 1.18059 1.19560 1.19228 0.97372 0.91017 1.44403 0.90295 1.17370 0.93993 0.93038 0.90767 1.17749 0.95028 0.86916 0.90084 1.42108 1.53971 1.11723 1.30244 1.20231 1.08667 0.92441 1.04469 1.16988 1.00521 0.82085 0.98829 1.91332 1.81270 1.47883 1.93316 1.20128 1.01691 0.98094 0.98941 1.21183 1.06132 0.97567 0.96571 1.96292 1.65381 1.99177 1.37541 0.90381 0.76866 0.78028 0.85263 0.85841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -39.08 11.35 21.82 0.25 -38.84 14 2 C 0.04 1.95 3.51 85.23 0.30 2.25 14 3 Si 0.96 35.39 29.59 68.60 2.03 37.42 14 4 H -0.27 -9.69 7.11 99.48 0.71 -8.98 14 5 H -0.26 -9.05 7.11 99.48 0.71 -8.34 14 6 H -0.27 -10.27 7.11 99.48 0.71 -9.56 14 7 C -0.49 -23.76 7.65 23.34 0.18 -23.58 14 8 H 0.08 3.86 7.63 -2.91 -0.02 3.84 14 9 C 0.06 2.71 5.26 -21.14 -0.11 2.59 14 10 C 0.21 9.64 6.25 38.94 0.24 9.89 14 11 N -0.84 -33.45 8.02 -50.44 -0.40 -33.85 14 12 C -0.23 -10.01 9.85 22.41 0.22 -9.79 14 13 C 0.04 1.63 7.31 22.55 0.16 1.79 14 14 F -0.16 -6.59 17.26 44.97 0.78 -5.82 14 15 C -0.17 -7.37 9.67 22.08 0.21 -7.16 14 16 C -0.13 -6.23 6.24 22.51 0.14 -6.09 14 17 Br -0.07 -2.84 32.48 -20.37 -0.66 -3.50 14 18 H 0.29 12.48 8.30 -92.71 -0.77 11.71 14 19 H 0.40 16.31 5.62 -92.71 -0.52 15.79 14 20 H 0.39 12.89 8.84 -92.71 -0.82 12.07 14 21 H 0.13 4.87 8.06 -2.91 -0.02 4.84 14 22 H 0.12 5.00 8.06 -2.91 -0.02 4.97 14 Total: -1.00 -51.61 222.26 3.28 -48.34 By element: Atomic # 1 Polarization: 26.40 SS G_CDS: -0.06 Total: 26.34 kcal Atomic # 6 Polarization: -31.45 SS G_CDS: 1.35 Total: -30.10 kcal Atomic # 7 Polarization: -72.53 SS G_CDS: -0.16 Total: -72.69 kcal Atomic # 9 Polarization: -6.59 SS G_CDS: 0.78 Total: -5.82 kcal Atomic # 14 Polarization: 35.39 SS G_CDS: 2.03 Total: 37.42 kcal Atomic # 35 Polarization: -2.84 SS G_CDS: -0.66 Total: -3.50 kcal Total: -51.61 3.28 -48.34 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575713736.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.674 kcal (2) G-P(sol) polarization free energy of solvation -51.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds