Wall clock time and date at job start Mon Mar 30 2020 07:50:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30833 * 1 3 3 Si 1.86805 * 119.99945 * 2 1 4 4 H 1.48501 * 109.46914 * 359.97438 * 3 2 1 5 5 H 1.48498 * 109.47273 * 119.99436 * 3 2 1 6 6 H 1.48495 * 109.46916 * 240.00024 * 3 2 1 7 7 C 1.39927 * 120.00063 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99362 * 154.65950 * 7 2 1 9 9 C 1.41362 * 120.00127 * 334.65538 * 7 2 1 10 10 C 1.40763 * 120.20533 * 334.32331 * 9 7 2 11 11 C 1.37831 * 119.87532 * 179.71506 * 10 9 7 12 12 F 1.35100 * 119.85192 * 180.27352 * 11 10 9 13 13 C 1.38803 * 120.29632 * 0.55801 * 11 10 9 14 14 C 1.39153 * 120.41663 * 359.71566 * 13 11 10 15 15 N 1.39743 * 119.94030 * 180.02562 * 14 13 11 16 16 C 1.38457 * 120.11729 * 359.97438 * 14 13 11 17 17 Br 1.89106 * 120.14850 * 180.02562 * 16 14 13 18 18 H 0.97009 * 120.00176 * 174.19009 * 1 2 3 19 19 H 1.07998 * 120.06100 * 359.97438 * 10 9 7 20 20 H 1.07999 * 119.79062 * 179.74167 * 13 11 10 21 21 H 0.97004 * 120.00192 * 179.97438 * 15 14 13 22 22 H 0.97007 * 120.00274 * 359.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 1.2773 2.7465 -0.0006 5 1 3.0960 1.6966 1.2125 6 1 3.0960 1.6964 -1.2125 7 6 2.0080 -1.2118 0.0005 8 1 3.0101 -1.2568 -0.3998 9 6 1.4033 -2.3769 0.5251 10 6 0.3919 -2.2729 1.4986 11 6 -0.1972 -3.4131 2.0011 12 9 -1.1717 -3.3126 2.9314 13 6 0.2103 -4.6645 1.5600 14 6 1.2130 -4.7818 0.6023 15 7 1.6152 -6.0466 0.1649 16 6 1.8120 -3.6475 0.0811 17 35 3.1742 -3.8059 -1.2210 18 1 -0.4851 -0.8358 -0.0850 19 1 0.0752 -1.3013 1.8481 20 1 -0.2540 -5.5527 1.9624 21 1 2.3138 -6.1294 -0.5030 22 1 1.1958 -6.8419 0.5291 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575713804.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:50:11 Heat of formation + Delta-G solvation = -59.499183 kcal Electronic energy + Delta-G solvation = -11952.704357 eV Core-core repulsion = 9466.512579 eV Total energy + Delta-G solvation = -2486.191779 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 258.970 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -49.74187 -39.75832 -36.65830 -34.26522 -32.50838 -30.30384 -28.73160 -27.16011 -23.09818 -22.63974 -20.06764 -18.24629 -17.81271 -16.56148 -16.43484 -16.20784 -15.87845 -15.67593 -14.73159 -14.31577 -13.95747 -13.32810 -12.90566 -12.44532 -12.36146 -11.97006 -11.66931 -11.51921 -11.19035 -10.82975 -10.59671 -9.49464 -9.25318 -8.40054 -6.63387 0.57270 0.89969 1.30990 1.53767 1.65367 1.82538 2.31655 2.55399 2.98535 3.32376 3.75588 4.37313 4.53850 4.84627 5.07301 5.24517 5.46138 5.57424 5.72016 5.94729 6.08119 6.46975 6.64365 6.81009 7.06473 7.94604 Molecular weight = 258.97amu Principal moments of inertia in cm(-1) A = 0.018994 B = 0.013343 C = 0.008076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.794183 B = 2098.002235 C = 3466.415381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.007 3.993 3 Si 1.112 2.888 4 H -0.272 1.272 5 H -0.262 1.262 6 H -0.253 1.253 7 C -0.514 4.514 8 H 0.095 0.905 9 C 0.138 3.862 10 C -0.312 4.312 11 C 0.163 3.837 12 F -0.158 7.158 13 C -0.353 4.353 14 C 0.302 3.698 15 N -0.861 5.861 16 C -0.296 4.296 17 Br -0.071 7.071 18 H 0.288 0.712 19 H 0.100 0.900 20 H 0.134 0.866 21 H 0.402 0.598 22 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.143 -5.927 -2.081 8.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.212 4.212 3 Si 0.929 3.071 4 H -0.197 1.197 5 H -0.186 1.186 6 H -0.177 1.177 7 C -0.541 4.541 8 H 0.113 0.887 9 C 0.133 3.867 10 C -0.334 4.334 11 C 0.143 3.857 12 F -0.137 7.137 13 C -0.377 4.377 14 C 0.193 3.807 15 N -0.403 5.403 16 C -0.381 4.381 17 Br 0.013 6.987 18 H 0.100 0.900 19 H 0.118 0.882 20 H 0.152 0.848 21 H 0.233 0.767 22 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 5.328 -4.349 -2.471 7.308 hybrid contribution -0.565 -2.010 0.433 2.132 sum 4.763 -6.359 -2.038 8.202 Atomic orbital electron populations 1.70553 1.09134 1.33765 1.28479 1.28509 0.95529 1.07611 0.89552 0.83068 0.74917 0.69673 0.79468 1.19662 1.18606 1.17735 1.20998 1.03754 0.94106 1.35212 0.88745 1.17180 0.88934 0.92139 0.88466 1.20811 1.08768 0.96198 1.07614 1.17444 0.86203 0.94788 0.87272 1.91357 1.60992 1.97309 1.64002 1.19768 1.10344 0.95536 1.12091 1.16839 0.89447 0.85331 0.89093 1.42512 1.45278 1.03675 1.48813 1.21065 1.10864 0.94447 1.11683 1.96178 1.50211 1.97633 1.54684 0.89981 0.88202 0.84776 0.76708 0.76287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -41.93 12.32 21.82 0.27 -41.66 14 2 C 0.01 0.35 4.94 85.25 0.42 0.77 14 3 Si 1.11 41.38 30.00 68.60 2.06 43.44 14 4 H -0.27 -10.03 7.11 99.48 0.71 -9.32 14 5 H -0.26 -9.24 7.11 99.48 0.71 -8.54 14 6 H -0.25 -8.60 7.11 99.48 0.71 -7.89 14 7 C -0.51 -26.19 8.38 23.45 0.20 -25.99 14 8 H 0.09 4.66 6.94 -2.91 -0.02 4.64 14 9 C 0.14 7.13 5.29 -21.30 -0.11 7.02 14 10 C -0.31 -16.18 7.92 22.79 0.18 -16.00 14 11 C 0.16 7.76 7.28 22.31 0.16 7.92 14 12 F -0.16 -7.17 17.26 44.97 0.78 -6.39 14 13 C -0.35 -14.92 9.87 22.63 0.22 -14.70 14 14 C 0.30 12.43 6.74 38.15 0.26 12.68 14 15 N -0.86 -26.57 9.03 -51.45 -0.46 -27.04 14 16 C -0.30 -13.62 6.30 22.92 0.14 -13.47 14 17 Br -0.07 -2.75 30.48 -20.37 -0.62 -3.38 14 18 H 0.29 15.85 6.69 -92.70 -0.62 15.23 14 19 H 0.10 5.47 6.50 -2.91 -0.02 5.46 14 20 H 0.13 4.87 8.06 -2.91 -0.02 4.84 14 21 H 0.40 11.61 7.21 -92.71 -0.67 10.94 14 22 H 0.41 9.90 8.84 -92.70 -0.82 9.08 14 Total: -1.00 -55.79 221.37 3.44 -52.35 By element: Atomic # 1 Polarization: 24.49 SS G_CDS: -0.05 Total: 24.44 kcal Atomic # 6 Polarization: -43.24 SS G_CDS: 1.47 Total: -41.77 kcal Atomic # 7 Polarization: -68.50 SS G_CDS: -0.20 Total: -68.70 kcal Atomic # 9 Polarization: -7.17 SS G_CDS: 0.78 Total: -6.39 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 2.06 Total: 43.44 kcal Atomic # 35 Polarization: -2.75 SS G_CDS: -0.62 Total: -3.38 kcal Total: -55.79 3.44 -52.35 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575713804.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.145 kcal (2) G-P(sol) polarization free energy of solvation -55.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds