Wall clock time and date at job start Mon Mar 30 2020 07:50:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30862 * 1 3 3 Si 1.86802 * 119.99837 * 2 1 4 4 H 1.48507 * 109.47085 * 239.99946 * 3 2 1 5 5 H 1.48494 * 109.47193 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47148 * 120.00525 * 3 2 1 7 7 C 1.39909 * 120.00154 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99889 * 196.71727 * 7 2 1 9 9 C 1.41281 * 119.99968 * 16.98920 * 7 2 1 10 10 C 1.40826 * 120.21705 * 25.40242 * 9 7 2 11 11 C 1.36526 * 120.03664 * 179.97438 * 10 9 7 12 12 C 1.38759 * 120.50043 * 0.02562 * 11 10 9 13 13 Br 1.89098 * 119.77595 * 180.02562 * 12 11 10 14 14 C 1.39192 * 120.44269 * 359.97438 * 12 11 10 15 15 N 1.39932 * 120.02521 * 180.02562 * 14 12 11 16 16 C 1.38590 * 119.94792 * 359.73083 * 14 12 11 17 17 F 1.35099 * 120.24308 * 180.27258 * 16 14 12 18 18 H 0.97004 * 119.99830 * 359.97438 * 1 2 3 19 19 H 1.07992 * 119.98194 * 0.03033 * 10 9 7 20 20 H 1.08000 * 119.75016 * 180.02562 * 11 10 9 21 21 H 0.97005 * 120.00055 * 0.02562 * 15 14 12 22 22 H 0.96997 * 120.00395 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2426 1.6178 0.0000 4 1 3.0964 1.6965 -1.2126 5 1 1.2776 2.7464 0.0006 6 1 3.0964 1.6964 1.2124 7 6 2.0082 -1.2116 -0.0005 8 1 3.0539 -1.2315 0.2685 9 6 1.3481 -2.4083 -0.3586 10 6 0.2178 -2.3705 -1.1978 11 6 -0.4170 -3.5292 -1.5418 12 6 0.0422 -4.7507 -1.0702 13 35 -0.8522 -6.3430 -1.5603 14 6 1.1575 -4.8118 -0.2396 15 7 1.6135 -6.0483 0.2306 16 6 1.8197 -3.6475 0.1164 17 9 2.9060 -3.7003 0.9178 18 1 -0.4850 0.8401 0.0004 19 1 -0.1466 -1.4245 -1.5700 20 1 -1.2832 -3.4948 -2.1860 21 1 1.1525 -6.8634 -0.0226 22 1 2.3905 -6.0905 0.8097 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575713820.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:50:27 Heat of formation + Delta-G solvation = -53.003824 kcal Electronic energy + Delta-G solvation = -11941.757342 eV Core-core repulsion = 9455.847223 eV Total energy + Delta-G solvation = -2485.910119 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 258.970 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -49.11045 -39.47990 -36.44053 -34.54610 -32.43783 -30.56372 -29.06617 -26.81928 -22.84209 -22.73158 -19.43295 -18.23422 -17.77613 -16.97397 -16.54198 -16.02132 -15.66575 -15.05103 -14.59272 -13.86090 -13.69779 -13.42880 -13.14838 -12.78523 -12.23206 -11.95720 -11.59840 -11.51287 -11.42344 -10.98433 -10.82037 -9.30928 -8.78725 -8.26113 -6.51787 0.67551 1.04237 1.11593 1.39289 1.49484 1.53077 2.17672 2.57213 3.06676 3.48529 4.05967 4.38255 4.80445 4.93715 5.11778 5.23203 5.51012 5.76584 5.90960 6.02684 6.39284 6.57034 6.71497 6.85476 7.02432 8.17626 Molecular weight = 258.97amu Principal moments of inertia in cm(-1) A = 0.043825 B = 0.007198 C = 0.006284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.746126 B = 3888.937739 C = 4454.780482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.799 5.799 2 C 0.041 3.959 3 Si 0.988 3.012 4 H -0.257 1.257 5 H -0.259 1.259 6 H -0.262 1.262 7 C -0.476 4.476 8 H 0.077 0.923 9 C 0.102 3.898 10 C -0.199 4.199 11 C -0.041 4.041 12 C -0.268 4.268 13 Br -0.065 7.065 14 C 0.245 3.755 15 N -0.868 5.868 16 C -0.137 4.137 17 F -0.166 7.166 18 H 0.297 0.703 19 H 0.120 0.880 20 H 0.124 0.876 21 H 0.404 0.596 22 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.470 -6.203 -2.438 6.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.178 4.178 3 Si 0.807 3.193 4 H -0.181 1.181 5 H -0.183 1.183 6 H -0.186 1.186 7 C -0.504 4.504 8 H 0.095 0.905 9 C 0.098 3.902 10 C -0.220 4.220 11 C -0.062 4.062 12 C -0.352 4.352 13 Br 0.018 6.982 14 C 0.138 3.862 15 N -0.411 5.411 16 C -0.163 4.163 17 F -0.146 7.146 18 H 0.109 0.891 19 H 0.138 0.862 20 H 0.142 0.858 21 H 0.235 0.765 22 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -2.013 -6.617 -2.592 7.386 hybrid contribution 0.790 0.633 0.535 1.145 sum -1.223 -5.983 -2.056 6.444 Atomic orbital electron populations 1.69844 1.08939 1.31640 1.31847 1.26821 0.95617 1.04581 0.90799 0.85157 0.78877 0.75003 0.80215 1.18141 1.18326 1.18605 1.19805 0.98155 0.92214 1.40215 0.90509 1.17845 0.92090 0.91211 0.89073 1.20726 1.00136 0.97459 1.03694 1.20374 0.98012 0.90507 0.97273 1.20328 1.04939 0.91702 1.18211 1.96287 1.77520 1.32110 1.92288 1.17096 0.91649 0.85458 0.92041 1.42396 1.36323 1.04550 1.57860 1.17230 0.95371 0.93738 1.09922 1.91189 1.53311 1.97127 1.72956 0.89137 0.86234 0.85788 0.76485 0.77044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -39.16 10.96 21.82 0.24 -38.93 14 2 C 0.04 1.95 5.15 85.24 0.44 2.39 14 3 Si 0.99 36.21 29.59 68.60 2.03 38.24 14 4 H -0.26 -9.24 7.11 99.48 0.71 -8.53 14 5 H -0.26 -8.76 7.11 99.48 0.71 -8.05 14 6 H -0.26 -9.49 7.11 99.48 0.71 -8.79 14 7 C -0.48 -25.34 8.77 23.42 0.21 -25.14 14 8 H 0.08 4.06 7.74 -2.91 -0.02 4.04 14 9 C 0.10 5.48 5.57 -21.26 -0.12 5.36 14 10 C -0.20 -10.01 8.63 22.50 0.19 -9.82 14 11 C -0.04 -1.85 9.70 21.99 0.21 -1.63 14 12 C -0.27 -11.46 6.26 22.62 0.14 -11.32 14 13 Br -0.07 -2.18 32.08 -20.37 -0.65 -2.84 14 14 C 0.25 10.94 6.75 38.16 0.26 11.20 14 15 N -0.87 -30.94 9.04 -51.23 -0.46 -31.41 14 16 C -0.14 -6.97 7.32 22.99 0.17 -6.81 14 17 F -0.17 -8.33 16.10 44.97 0.72 -7.61 14 18 H 0.30 12.95 8.30 -92.71 -0.77 12.18 14 19 H 0.12 6.12 6.19 -2.91 -0.02 6.10 14 20 H 0.12 4.89 8.06 -2.91 -0.02 4.87 14 21 H 0.40 12.52 7.21 -92.70 -0.67 11.86 14 22 H 0.40 13.15 8.32 -92.71 -0.77 12.38 14 Total: -1.00 -55.48 223.05 3.23 -52.26 By element: Atomic # 1 Polarization: 26.20 SS G_CDS: -0.15 Total: 26.05 kcal Atomic # 6 Polarization: -37.27 SS G_CDS: 1.50 Total: -35.77 kcal Atomic # 7 Polarization: -70.11 SS G_CDS: -0.22 Total: -70.33 kcal Atomic # 9 Polarization: -8.33 SS G_CDS: 0.72 Total: -7.61 kcal Atomic # 14 Polarization: 36.21 SS G_CDS: 2.03 Total: 38.24 kcal Atomic # 35 Polarization: -2.18 SS G_CDS: -0.65 Total: -2.84 kcal Total: -55.48 3.23 -52.26 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575713820.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.748 kcal (2) G-P(sol) polarization free energy of solvation -55.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds