Wall clock time and date at job start Mon Mar 30 2020 07:52:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30871 * 1 3 3 Si 1.86799 * 119.99745 * 2 1 4 4 H 1.48504 * 109.46720 * 275.40487 * 3 2 1 5 5 H 1.48497 * 109.47059 * 35.40218 * 3 2 1 6 6 H 1.48493 * 109.46990 * 155.40586 * 3 2 1 7 7 C 1.39905 * 120.00071 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00114 * 341.77067 * 7 2 1 9 9 C 1.41246 * 119.99790 * 161.77380 * 7 2 1 10 10 C 1.40670 * 120.21460 * 330.12844 * 9 7 2 11 11 C 1.38098 * 119.71622 * 179.72427 * 10 9 7 12 12 N 1.39809 * 119.92207 * 180.27273 * 11 10 9 13 13 C 1.39545 * 120.16302 * 0.50829 * 11 10 9 14 14 Br 1.89099 * 119.77768 * 179.76488 * 13 11 10 15 15 C 1.38474 * 120.44066 * 359.48862 * 13 11 10 16 16 C 1.37966 * 120.27680 * 0.25348 * 15 13 11 17 17 F 1.35104 * 120.08045 * 180.02562 * 16 15 13 18 18 H 0.96996 * 120.00379 * 0.02562 * 1 2 3 19 19 H 1.07990 * 120.14180 * 359.95376 * 10 9 7 20 20 H 0.96997 * 120.00535 * 180.23476 * 12 11 10 21 21 H 0.97003 * 119.99762 * 0.23607 * 12 11 10 22 22 H 1.08001 * 119.86306 * 180.23634 * 15 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2426 1.6178 0.0000 4 1 2.3759 2.1123 -1.3939 5 1 1.5018 2.6170 0.8111 6 1 3.5926 1.4100 0.5827 7 6 2.0083 -1.2116 0.0005 8 1 1.5089 -2.1233 0.2935 9 6 3.3676 -1.2424 -0.3820 10 6 3.8619 -0.3120 -1.3141 11 6 5.1940 -0.3478 -1.6765 12 7 5.6911 0.5785 -2.5982 13 6 6.0440 -1.3094 -1.1288 14 35 7.8647 -1.3527 -1.6378 15 6 5.5645 -2.2285 -0.2107 16 6 4.2381 -2.2059 0.1683 17 9 3.7746 -3.1041 1.0647 18 1 -0.4850 0.8400 -0.0004 19 1 3.2034 0.4295 -1.7416 20 1 6.6258 0.5523 -2.8562 21 1 5.1013 1.2475 -2.9797 22 1 6.2315 -2.9663 0.2102 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575713824.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:52:12 Heat of formation + Delta-G solvation = -53.289704 kcal Electronic energy + Delta-G solvation = -11992.777176 eV Core-core repulsion = 9506.854660 eV Total energy + Delta-G solvation = -2485.922516 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 258.970 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.22052 -39.80901 -36.14837 -34.78543 -33.09012 -30.91853 -29.03133 -26.68893 -23.81644 -22.18069 -19.68181 -18.28040 -17.95344 -17.31943 -16.53688 -16.05993 -15.88007 -15.16296 -14.64566 -14.14345 -13.81964 -13.73438 -13.60762 -12.72647 -12.70654 -12.00242 -11.69762 -11.59235 -11.20954 -11.06246 -10.81582 -9.58591 -9.03362 -8.33068 -6.67521 0.46877 0.73112 0.98308 1.24532 1.40800 1.50010 2.09031 2.41692 3.04779 3.25054 3.97476 4.02459 4.59299 4.66659 5.00920 5.09545 5.22137 5.35402 5.64258 5.90685 6.10810 6.40123 6.60280 6.67514 7.04667 8.03656 Molecular weight = 258.97amu Principal moments of inertia in cm(-1) A = 0.035058 B = 0.008819 C = 0.007355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.479925 B = 3174.028387 C = 3805.933735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C 0.051 3.949 3 Si 0.973 3.027 4 H -0.244 1.244 5 H -0.276 1.276 6 H -0.254 1.254 7 C -0.465 4.465 8 H 0.059 0.941 9 C 0.096 3.904 10 C -0.303 4.303 11 C 0.278 3.722 12 N -0.865 5.865 13 C -0.256 4.256 14 Br -0.054 7.054 15 C -0.040 4.040 16 C -0.076 4.076 17 F -0.166 7.166 18 H 0.301 0.699 19 H 0.120 0.880 20 H 0.404 0.596 21 H 0.405 0.595 22 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.872 3.709 -4.898 14.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.167 4.167 3 Si 0.795 3.205 4 H -0.168 1.168 5 H -0.203 1.203 6 H -0.178 1.178 7 C -0.493 4.493 8 H 0.077 0.923 9 C 0.091 3.909 10 C -0.328 4.328 11 C 0.170 3.830 12 N -0.407 5.407 13 C -0.340 4.340 14 Br 0.030 6.970 15 C -0.061 4.061 16 C -0.097 4.097 17 F -0.145 7.145 18 H 0.112 0.888 19 H 0.137 0.863 20 H 0.236 0.764 21 H 0.235 0.765 22 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 13.223 3.710 -5.024 14.624 hybrid contribution -0.748 0.254 0.272 0.835 sum 12.475 3.963 -4.752 13.926 Atomic orbital electron populations 1.69712 1.09359 1.32327 1.33706 1.26975 0.95440 1.04505 0.89786 0.85359 0.79426 0.75435 0.80283 1.16815 1.20261 1.17778 1.19444 0.94070 0.96222 1.39522 0.92321 1.17637 0.92392 0.90860 0.90007 1.20187 0.94389 1.09078 1.09173 1.17155 0.90865 0.87529 0.87474 1.42585 1.14155 1.35670 1.48245 1.20328 0.90923 1.08209 1.14533 1.96364 1.10052 1.98766 1.91809 1.20453 0.92939 0.97420 0.95288 1.17748 0.93087 0.98410 1.00498 1.91272 1.89766 1.66712 1.66797 0.88808 0.86279 0.76405 0.76532 0.84456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.32 13.93 21.82 0.30 -43.02 14 2 C 0.05 2.61 5.40 85.24 0.46 3.08 14 3 Si 0.97 40.14 24.52 68.60 1.68 41.82 14 4 H -0.24 -8.96 6.71 99.48 0.67 -8.29 14 5 H -0.28 -10.71 7.11 99.48 0.71 -10.01 14 6 H -0.25 -10.94 6.86 99.48 0.68 -10.26 14 7 C -0.46 -25.85 9.25 23.41 0.22 -25.63 14 8 H 0.06 3.60 7.97 -2.91 -0.02 3.57 14 9 C 0.10 4.86 5.11 -21.26 -0.11 4.75 14 10 C -0.30 -13.47 7.00 22.83 0.16 -13.31 14 11 C 0.28 10.73 6.74 38.15 0.26 10.98 14 12 N -0.86 -25.25 9.03 -51.39 -0.46 -25.71 14 13 C -0.26 -9.74 6.26 22.64 0.14 -9.60 14 14 Br -0.05 -1.56 32.08 -20.37 -0.65 -2.21 14 15 C -0.04 -1.65 9.73 22.26 0.22 -1.43 14 16 C -0.08 -3.67 7.30 22.89 0.17 -3.51 14 17 F -0.17 -8.37 16.77 44.97 0.75 -7.61 14 18 H 0.30 13.90 8.30 -92.71 -0.77 13.13 14 19 H 0.12 5.09 4.74 -2.92 -0.01 5.08 14 20 H 0.40 10.19 7.20 -92.71 -0.67 9.52 14 21 H 0.41 10.15 8.84 -92.71 -0.82 9.33 14 22 H 0.14 4.97 8.06 -2.91 -0.02 4.95 14 Total: -1.00 -57.26 218.89 2.87 -54.39 By element: Atomic # 1 Polarization: 17.28 SS G_CDS: -0.26 Total: 17.03 kcal Atomic # 6 Polarization: -36.18 SS G_CDS: 1.51 Total: -34.67 kcal Atomic # 7 Polarization: -68.57 SS G_CDS: -0.16 Total: -68.73 kcal Atomic # 9 Polarization: -8.37 SS G_CDS: 0.75 Total: -7.61 kcal Atomic # 14 Polarization: 40.14 SS G_CDS: 1.68 Total: 41.82 kcal Atomic # 35 Polarization: -1.56 SS G_CDS: -0.65 Total: -2.21 kcal Total: -57.26 2.87 -54.39 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575713824.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.095 kcal (2) G-P(sol) polarization free energy of solvation -57.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds