Wall clock time and date at job start Mon Mar 30 2020 07:50:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30891 * 1 3 3 Si 1.86802 * 120.00200 * 2 1 4 4 H 1.48496 * 109.46954 * 275.38946 * 3 2 1 5 5 H 1.48499 * 109.46926 * 35.38681 * 3 2 1 6 6 H 1.48497 * 109.47313 * 155.38968 * 3 2 1 7 7 C 1.39904 * 119.99951 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00190 * 342.43827 * 7 2 1 9 9 C 1.41037 * 120.00435 * 162.16094 * 7 2 1 10 10 C 1.40789 * 120.27949 * 329.65593 * 9 7 2 11 11 C 1.36389 * 119.99620 * 179.97438 * 10 9 7 12 12 C 1.39043 * 120.59816 * 0.02562 * 11 10 9 13 13 Br 1.89093 * 119.71064 * 180.02562 * 12 11 10 14 14 C 1.38409 * 120.57759 * 359.97438 * 12 11 10 15 15 F 1.35101 * 120.01105 * 180.02562 * 14 12 11 16 16 C 1.38895 * 119.97961 * 359.74305 * 14 12 11 17 17 N 1.38905 * 120.29166 * 180.25195 * 16 14 12 18 18 H 0.97006 * 119.99873 * 0.02562 * 1 2 3 19 19 H 1.07998 * 120.00191 * 359.97438 * 10 9 7 20 20 H 1.08000 * 119.70244 * 180.02562 * 11 10 9 21 21 H 0.96996 * 120.00207 * 180.25375 * 17 16 14 22 22 H 0.97006 * 119.99839 * 0.25928 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 2.3766 2.1121 -1.3939 5 1 1.5020 2.6171 0.8108 6 1 3.5928 1.4100 0.5830 7 6 2.0084 -1.2116 0.0005 8 1 1.5062 -2.1250 0.2832 9 6 3.3679 -1.2413 -0.3736 10 6 3.8675 -0.3139 -1.3078 11 6 5.1833 -0.3475 -1.6651 12 6 6.0422 -1.2925 -1.1149 13 35 7.8622 -1.3158 -1.6276 14 6 5.5769 -2.2155 -0.1944 15 9 6.4216 -3.1283 0.3333 16 6 4.2426 -2.1993 0.1910 17 7 3.7699 -3.1192 1.1181 18 1 -0.4850 0.8401 -0.0004 19 1 3.2088 0.4239 -1.7414 20 1 5.5616 0.3664 -2.3818 21 1 2.8365 -3.1065 1.3815 22 1 4.3734 -3.7744 1.5023 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575714165.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:50:52 Heat of formation + Delta-G solvation = -47.480081 kcal Electronic energy + Delta-G solvation = -12022.088690 eV Core-core repulsion = 9536.418098 eV Total energy + Delta-G solvation = -2485.670591 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 258.970 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -49.60183 -39.83419 -35.65459 -35.28802 -32.74111 -30.75382 -29.52613 -26.56190 -23.43689 -22.46093 -19.66779 -18.20953 -18.04293 -17.14773 -16.59061 -16.41637 -15.77471 -15.28484 -14.81482 -14.03062 -13.95117 -13.57133 -13.05530 -12.82132 -12.52471 -12.18747 -11.81185 -11.68018 -11.17076 -11.02747 -10.81735 -9.39451 -8.94774 -8.45967 -6.40792 0.36994 0.77148 0.95631 1.31016 1.43044 1.52791 2.12624 2.44416 3.27096 3.29561 3.60501 4.22556 4.40459 4.69494 5.02180 5.15999 5.24212 5.44675 5.71733 5.94217 6.19209 6.38468 6.68089 6.87870 7.19320 8.11099 Molecular weight = 258.97amu Principal moments of inertia in cm(-1) A = 0.035951 B = 0.008664 C = 0.007266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.644203 B = 3230.929430 C = 3852.735356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.833 5.833 2 C 0.055 3.945 3 Si 0.956 3.044 4 H -0.253 1.253 5 H -0.280 1.280 6 H -0.254 1.254 7 C -0.456 4.456 8 H 0.075 0.925 9 C 0.057 3.943 10 C -0.228 4.228 11 C -0.066 4.066 12 C -0.203 4.203 13 Br -0.061 7.061 14 C 0.046 3.954 15 F -0.147 7.147 16 C 0.104 3.896 17 N -0.864 5.864 18 H 0.297 0.703 19 H 0.116 0.884 20 H 0.136 0.864 21 H 0.404 0.596 22 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.538 0.295 -1.383 9.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C -0.162 4.162 3 Si 0.780 3.220 4 H -0.178 1.178 5 H -0.207 1.207 6 H -0.178 1.178 7 C -0.485 4.485 8 H 0.093 0.907 9 C 0.051 3.949 10 C -0.249 4.249 11 C -0.087 4.087 12 C -0.284 4.284 13 Br 0.023 6.977 14 C 0.019 3.981 15 F -0.126 7.126 16 C -0.001 4.001 17 N -0.406 5.406 18 H 0.108 0.892 19 H 0.134 0.866 20 H 0.154 0.846 21 H 0.234 0.766 22 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 9.944 0.364 -1.565 10.073 hybrid contribution -0.505 0.065 0.508 0.719 sum 9.439 0.430 -1.058 9.508 Atomic orbital electron populations 1.69711 1.09006 1.31824 1.35220 1.26711 0.95245 1.03885 0.90392 0.85593 0.79705 0.76865 0.79879 1.17770 1.20652 1.17766 1.19191 0.93143 0.95963 1.40224 0.90698 1.17441 0.92679 0.92269 0.92516 1.20678 0.96000 1.04937 1.03287 1.20245 0.92347 0.96966 0.99171 1.20973 0.91593 1.06128 1.09720 1.96410 1.10733 1.98969 1.91542 1.16584 0.86653 0.93503 1.01354 1.91348 1.70483 1.65155 1.85653 1.17797 0.89979 0.96769 0.95584 1.41759 1.13744 1.36984 1.48148 0.89239 0.86617 0.84599 0.76616 0.77387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -41.39 13.93 21.82 0.30 -41.08 14 2 C 0.05 2.65 5.40 85.24 0.46 3.11 14 3 Si 0.96 39.03 24.52 68.60 1.68 40.72 14 4 H -0.25 -9.67 6.72 99.48 0.67 -9.00 14 5 H -0.28 -10.90 7.11 99.48 0.71 -10.20 14 6 H -0.25 -10.80 6.86 99.48 0.68 -10.11 14 7 C -0.46 -22.60 8.90 23.36 0.21 -22.40 14 8 H 0.08 3.87 7.05 -2.91 -0.02 3.85 14 9 C 0.06 2.65 5.11 -21.17 -0.11 2.55 14 10 C -0.23 -9.97 7.10 22.46 0.16 -9.81 14 11 C -0.07 -2.63 9.70 22.03 0.21 -2.42 14 12 C -0.20 -8.21 6.24 22.50 0.14 -8.07 14 13 Br -0.06 -2.05 33.24 -20.37 -0.68 -2.73 14 14 C 0.05 1.96 7.27 22.47 0.16 2.13 14 15 F -0.15 -5.89 16.07 44.97 0.72 -5.16 14 16 C 0.10 4.56 6.80 38.98 0.26 4.82 14 17 N -0.86 -32.33 8.98 -50.24 -0.45 -32.79 14 18 H 0.30 13.30 8.30 -92.70 -0.77 12.54 14 19 H 0.12 4.93 4.77 -2.91 -0.01 4.92 14 20 H 0.14 4.64 8.06 -2.91 -0.02 4.61 14 21 H 0.40 14.85 7.16 -92.71 -0.66 14.19 14 22 H 0.40 12.86 8.31 -92.70 -0.77 12.09 14 Total: -1.00 -51.14 217.60 2.88 -48.27 By element: Atomic # 1 Polarization: 23.08 SS G_CDS: -0.20 Total: 22.88 kcal Atomic # 6 Polarization: -31.60 SS G_CDS: 1.50 Total: -30.10 kcal Atomic # 7 Polarization: -73.72 SS G_CDS: -0.15 Total: -73.87 kcal Atomic # 9 Polarization: -5.89 SS G_CDS: 0.72 Total: -5.16 kcal Atomic # 14 Polarization: 39.03 SS G_CDS: 1.68 Total: 40.72 kcal Atomic # 35 Polarization: -2.05 SS G_CDS: -0.68 Total: -2.73 kcal Total: -51.14 2.88 -48.27 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575714165.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.786 kcal (2) G-P(sol) polarization free energy of solvation -51.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds