Wall clock time and date at job start Mon Mar 30 2020 07:50:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30919 * 1 3 3 Si 1.86797 * 119.99776 * 2 1 4 4 H 1.48496 * 109.47393 * 240.00413 * 3 2 1 5 5 H 1.48505 * 109.47105 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47005 * 120.00304 * 3 2 1 7 7 C 1.39851 * 120.00314 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00034 * 196.49961 * 7 2 1 9 9 C 1.41096 * 119.99887 * 16.76709 * 7 2 1 10 10 C 1.40905 * 120.15629 * 26.08625 * 9 7 2 11 11 C 1.36345 * 119.88289 * 179.97438 * 10 9 7 12 12 C 1.39547 * 120.20213 * 359.97438 * 11 10 9 13 13 N 1.38973 * 119.84382 * 180.02562 * 12 11 10 14 14 C 1.39699 * 120.31259 * 0.03476 * 12 11 10 15 15 F 1.35095 * 119.94150 * 179.97438 * 14 12 11 16 16 C 1.36603 * 120.11729 * 359.70097 * 14 12 11 17 17 Br 1.89101 * 120.10246 * 180.29637 * 16 14 12 18 18 H 0.97004 * 120.00344 * 4.81181 * 1 2 3 19 19 H 1.08006 * 120.06023 * 359.95581 * 10 9 7 20 20 H 1.07999 * 119.90309 * 180.02562 * 11 10 9 21 21 H 0.97004 * 120.00133 * 359.97438 * 13 12 11 22 22 H 0.97000 * 120.00095 * 179.97438 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3092 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 3.0968 1.6966 -1.2125 5 1 1.2780 2.7465 0.0006 6 1 3.0969 1.6964 1.2125 7 6 2.0085 -1.2111 -0.0005 8 1 3.0552 -1.2304 0.2651 9 6 1.3481 -2.4069 -0.3536 10 6 0.2231 -2.3705 -1.2012 11 6 -0.4106 -3.5295 -1.5392 12 6 0.0520 -4.7513 -1.0487 13 7 -0.5992 -5.9282 -1.3984 14 6 1.1665 -4.7970 -0.2076 15 9 1.6076 -5.9839 0.2633 16 6 1.8144 -3.6442 0.1350 17 35 3.3280 -3.7074 1.2667 18 1 -0.4851 0.8371 -0.0705 19 1 -0.1369 -1.4262 -1.5823 20 1 -1.2727 -3.5021 -2.1892 21 1 -1.3736 -5.8990 -1.9819 22 1 -0.2794 -6.7787 -1.0591 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575714351.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:50:03 Heat of formation + Delta-G solvation = -45.636484 kcal Electronic energy + Delta-G solvation = -11949.499359 eV Core-core repulsion = 9463.908711 eV Total energy + Delta-G solvation = -2485.590647 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 258.970 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.53300 -39.55261 -36.24887 -34.38688 -32.28304 -30.25605 -29.74223 -26.32585 -23.01823 -22.63293 -19.50570 -18.16964 -17.36078 -17.00762 -16.76331 -16.34749 -15.65958 -14.98020 -14.29327 -14.05361 -13.71292 -13.26811 -12.79833 -12.65595 -12.60865 -12.10080 -11.91268 -11.52223 -11.07566 -10.66709 -10.49408 -9.27441 -8.70590 -8.36480 -6.17714 0.65475 0.93242 1.25878 1.44080 1.52740 1.56541 2.25402 2.66810 3.36239 3.54005 3.71204 4.47722 4.68940 4.95119 5.20292 5.28086 5.54857 5.64010 5.93850 6.11932 6.49179 6.74024 6.88715 6.97672 7.26471 8.33421 Molecular weight = 258.97amu Principal moments of inertia in cm(-1) A = 0.023647 B = 0.011786 C = 0.008035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.807418 B = 2375.097182 C = 3483.827628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.044 3.956 3 Si 0.973 3.027 4 H -0.259 1.259 5 H -0.266 1.266 6 H -0.265 1.265 7 C -0.476 4.476 8 H 0.083 0.917 9 C 0.089 3.911 10 C -0.131 4.131 11 C -0.134 4.134 12 C 0.085 3.915 13 N -0.874 5.874 14 C 0.048 3.952 15 F -0.153 7.153 16 C -0.220 4.220 17 Br -0.075 7.075 18 H 0.291 0.709 19 H 0.123 0.877 20 H 0.136 0.864 21 H 0.405 0.595 22 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.628 -3.614 -1.533 3.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C -0.172 4.172 3 Si 0.794 3.206 4 H -0.184 1.184 5 H -0.191 1.191 6 H -0.189 1.189 7 C -0.505 4.505 8 H 0.101 0.899 9 C 0.084 3.916 10 C -0.152 4.152 11 C -0.156 4.156 12 C -0.018 4.018 13 N -0.419 5.419 14 C 0.022 3.978 15 F -0.132 7.132 16 C -0.302 4.302 17 Br 0.010 6.990 18 H 0.102 0.898 19 H 0.140 0.860 20 H 0.154 0.846 21 H 0.235 0.765 22 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 1.021 -3.453 -1.002 3.738 hybrid contribution -0.107 0.158 -0.101 0.216 sum 0.914 -3.295 -1.103 3.593 Atomic orbital electron populations 1.69851 1.08595 1.31171 1.34943 1.26582 0.95421 1.03967 0.91243 0.85371 0.78979 0.76210 0.80030 1.18354 1.19064 1.18907 1.19740 0.98152 0.91673 1.40944 0.89869 1.17467 0.92587 0.90799 0.90785 1.21034 0.97640 0.97650 0.98865 1.20342 1.01727 0.90258 1.03291 1.17232 0.94629 0.89051 1.00931 1.41576 1.36387 1.04529 1.59399 1.16466 0.98143 0.79650 1.03542 1.91319 1.89330 1.44906 1.87681 1.21321 1.02075 0.95539 1.11216 1.96237 1.38655 1.98936 1.65191 0.89793 0.85956 0.84580 0.76542 0.77677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -40.10 10.98 21.81 0.24 -39.86 14 2 C 0.04 2.09 5.14 85.22 0.44 2.53 14 3 Si 0.97 36.90 29.59 68.60 2.03 38.93 14 4 H -0.26 -9.62 7.11 99.48 0.71 -8.91 14 5 H -0.27 -9.49 7.11 99.48 0.71 -8.78 14 6 H -0.26 -10.03 7.11 99.48 0.71 -9.32 14 7 C -0.48 -24.52 8.43 23.36 0.20 -24.32 14 8 H 0.08 4.25 6.89 -2.91 -0.02 4.23 14 9 C 0.09 4.59 5.56 -21.26 -0.12 4.47 14 10 C -0.13 -6.31 8.62 22.48 0.19 -6.12 14 11 C -0.13 -5.57 9.82 22.14 0.22 -5.35 14 12 C 0.08 3.46 6.77 38.68 0.26 3.73 14 13 N -0.87 -27.08 9.05 -50.92 -0.46 -27.54 14 14 C 0.05 2.21 7.23 22.24 0.16 2.37 14 15 F -0.15 -6.65 16.03 44.97 0.72 -5.93 14 16 C -0.22 -10.87 6.25 22.56 0.14 -10.73 14 17 Br -0.07 -3.31 31.63 -20.37 -0.64 -3.96 14 18 H 0.29 12.87 8.30 -92.71 -0.77 12.10 14 19 H 0.12 5.99 6.22 -2.91 -0.02 5.97 14 20 H 0.14 4.66 8.06 -2.91 -0.02 4.64 14 21 H 0.40 9.99 8.83 -92.71 -0.82 9.18 14 22 H 0.40 11.34 8.28 -92.71 -0.77 10.57 14 Total: -1.00 -55.17 223.02 3.08 -52.09 By element: Atomic # 1 Polarization: 19.98 SS G_CDS: -0.30 Total: 19.69 kcal Atomic # 6 Polarization: -34.92 SS G_CDS: 1.49 Total: -33.42 kcal Atomic # 7 Polarization: -67.18 SS G_CDS: -0.22 Total: -67.40 kcal Atomic # 9 Polarization: -6.65 SS G_CDS: 0.72 Total: -5.93 kcal Atomic # 14 Polarization: 36.90 SS G_CDS: 2.03 Total: 38.93 kcal Atomic # 35 Polarization: -3.31 SS G_CDS: -0.64 Total: -3.96 kcal Total: -55.17 3.08 -52.09 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575714351.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.455 kcal (2) G-P(sol) polarization free energy of solvation -55.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds