Wall clock time and date at job start Mon Mar 30 2020 07:52:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30863 * 1 3 3 Si 1.86806 * 120.00079 * 2 1 4 4 H 1.48497 * 109.47056 * 270.00143 * 3 2 1 5 5 H 1.48498 * 109.46941 * 30.00253 * 3 2 1 6 6 H 1.48493 * 109.47303 * 150.00150 * 3 2 1 7 7 C 1.39896 * 120.00345 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00550 * 163.86829 * 7 2 1 9 9 C 1.41260 * 119.99646 * 343.87780 * 7 2 1 10 10 C 1.40705 * 120.18906 * 333.81139 * 9 7 2 11 11 C 1.38051 * 119.72036 * 179.74441 * 10 9 7 12 12 N 1.39837 * 119.94850 * 180.25469 * 11 10 9 13 13 C 1.39679 * 120.11112 * 0.49507 * 11 10 9 14 14 F 1.35102 * 119.80981 * 179.75692 * 13 11 10 15 15 C 1.38678 * 120.38547 * 359.48392 * 13 11 10 16 16 C 1.37749 * 120.28027 * 0.27909 * 15 13 11 17 17 Br 1.89100 * 120.06271 * 179.97438 * 16 15 13 18 18 H 0.97006 * 120.00065 * 5.03941 * 1 2 3 19 19 H 1.08002 * 120.13938 * 359.96643 * 10 9 7 20 20 H 0.96998 * 120.00221 * 180.23739 * 12 11 10 21 21 H 0.97003 * 119.99506 * 0.23744 * 12 11 10 22 22 H 1.07997 * 119.86091 * 180.25273 * 15 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 2.4901 2.0464 -1.4000 5 1 1.4401 2.6527 0.7001 6 1 3.5402 1.4402 0.7000 7 6 2.0082 -1.2115 -0.0005 8 1 3.0563 -1.2298 -0.2604 9 6 1.3436 -2.4109 0.3386 10 6 0.2132 -2.3811 1.1760 11 6 -0.4321 -3.5585 1.4970 12 7 -1.5591 -3.5338 2.3244 13 6 0.0418 -4.7751 1.0007 14 9 -0.5914 -5.9243 1.3227 15 6 1.1553 -4.8098 0.1748 16 6 1.8086 -3.6441 -0.1597 17 35 3.3267 -3.6986 -1.2858 18 1 -0.4850 0.8368 -0.0738 19 1 -0.1503 -1.4406 1.5630 20 1 -2.0111 -4.3610 2.5532 21 1 -1.8889 -2.6894 2.6695 22 1 1.5121 -5.7548 -0.2075 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575714396.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:52:47 Heat of formation + Delta-G solvation = -37.187635 kcal Electronic energy + Delta-G solvation = -11906.351697 eV Core-core repulsion = 9421.127419 eV Total energy + Delta-G solvation = -2485.224277 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 258.970 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -47.51958 -37.67591 -34.25475 -33.20449 -29.78234 -29.52303 -26.82809 -24.98474 -21.58217 -20.39060 -17.64189 -16.30156 -16.15049 -15.23609 -14.84762 -14.36023 -13.90472 -13.19339 -12.76252 -12.12584 -11.97744 -11.66675 -11.24194 -11.11585 -10.69538 -10.38993 -10.13735 -9.86816 -9.35007 -8.87108 -8.71410 -7.51639 -6.95616 -6.44209 -4.56415 2.58603 2.69871 3.00937 3.03951 3.10751 3.14872 3.82770 4.41724 4.74585 5.38324 5.71366 6.02574 6.70565 6.72316 6.99760 7.04297 7.26381 7.54703 7.70947 7.83946 8.19348 8.48798 8.60879 8.66079 8.72684 10.00356 Molecular weight = 258.97amu Principal moments of inertia in cm(-1) A = 0.018196 B = 0.012779 C = 0.007663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.462892 B = 2190.604560 C = 3652.920781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.781 5.781 2 C 0.077 3.923 3 Si 0.911 3.089 4 H -0.267 1.267 5 H -0.275 1.275 6 H -0.257 1.257 7 C -0.440 4.440 8 H 0.094 0.906 9 C 0.155 3.845 10 C -0.215 4.215 11 C 0.210 3.790 12 N -0.886 5.886 13 C -0.104 4.104 14 F -0.171 7.171 15 C -0.052 4.052 16 C -0.205 4.205 17 Br -0.100 7.100 18 H 0.283 0.717 19 H 0.132 0.868 20 H 0.388 0.612 21 H 0.393 0.607 22 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.707 -1.714 0.457 2.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.405 5.405 2 C -0.143 4.143 3 Si 0.735 3.265 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.181 1.181 7 C -0.469 4.469 8 H 0.112 0.888 9 C 0.149 3.851 10 C -0.241 4.241 11 C 0.107 3.893 12 N -0.427 5.427 13 C -0.128 4.128 14 F -0.151 7.151 15 C -0.073 4.073 16 C -0.285 4.285 17 Br -0.016 7.016 18 H 0.094 0.906 19 H 0.150 0.850 20 H 0.215 0.785 21 H 0.220 0.780 22 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 2.100 -1.614 0.055 2.649 hybrid contribution -0.538 0.552 0.408 0.872 sum 1.563 -1.062 0.463 1.946 Atomic orbital electron populations 1.69821 1.07718 1.29743 1.33228 1.26001 0.94783 1.01620 0.91893 0.86231 0.80701 0.79989 0.79552 1.19187 1.20033 1.18077 1.19811 0.98422 0.90289 1.38347 0.88772 1.17139 0.89967 0.90694 0.87255 1.20582 1.01698 0.94994 1.06780 1.17681 0.87792 0.92860 0.90991 1.42233 1.32388 1.10410 1.57642 1.16605 1.01522 0.79899 1.14781 1.91243 1.82261 1.48653 1.92917 1.20168 0.93790 0.96900 0.96457 1.21060 1.00761 0.95684 1.11040 1.96262 1.39916 1.98992 1.66405 0.90557 0.85036 0.78543 0.77996 0.87225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.85 10.96 55.54 0.61 -18.24 14 2 C 0.08 1.82 5.16 -17.34 -0.09 1.73 14 3 Si 0.91 17.76 29.59 -169.99 -5.03 12.73 14 4 H -0.27 -5.17 7.11 56.52 0.40 -4.77 14 5 H -0.28 -5.23 7.11 56.52 0.40 -4.83 14 6 H -0.26 -5.00 7.11 56.52 0.40 -4.60 14 7 C -0.44 -11.01 8.43 -37.81 -0.32 -11.33 14 8 H 0.09 2.31 6.89 -52.49 -0.36 1.94 14 9 C 0.15 3.94 5.56 -106.81 -0.59 3.35 14 10 C -0.21 -5.27 8.50 -38.72 -0.33 -5.60 14 11 C 0.21 4.77 6.75 -83.74 -0.57 4.20 14 12 N -0.89 -16.29 9.09 32.43 0.29 -15.99 14 13 C -0.10 -2.41 7.33 -38.88 -0.29 -2.69 14 14 F -0.17 -3.74 16.62 2.25 0.04 -3.70 14 15 C -0.05 -1.19 9.73 -39.60 -0.39 -1.57 14 16 C -0.20 -4.90 6.28 -38.75 -0.24 -5.14 14 17 Br -0.10 -2.09 32.09 -68.01 -2.18 -4.27 14 18 H 0.28 6.21 8.30 -40.82 -0.34 5.87 14 19 H 0.13 3.26 6.22 -52.49 -0.33 2.94 14 20 H 0.39 6.41 8.30 -40.82 -0.34 6.07 14 21 H 0.39 6.43 8.84 -40.82 -0.36 6.07 14 22 H 0.11 2.29 8.06 -52.49 -0.42 1.86 14 LS Contribution 224.04 15.07 3.38 3.38 Total: -1.00 -25.96 224.04 -6.65 -32.61 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: -0.95 Total: 10.56 kcal Atomic # 6 Polarization: -14.25 SS G_CDS: -2.81 Total: -17.06 kcal Atomic # 7 Polarization: -35.14 SS G_CDS: 0.90 Total: -34.24 kcal Atomic # 9 Polarization: -3.74 SS G_CDS: 0.04 Total: -3.70 kcal Atomic # 14 Polarization: 17.76 SS G_CDS: -5.03 Total: 12.73 kcal Atomic # 35 Polarization: -2.09 SS G_CDS: -2.18 Total: -4.27 kcal Total LS contribution 3.38 Total: 3.38 kcal Total: -25.96 -6.65 -32.61 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575714396.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.578 kcal (2) G-P(sol) polarization free energy of solvation -25.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds