Wall clock time and date at job start Mon Mar 30 2020 07:52:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30863 * 1 3 3 Si 1.86806 * 120.00079 * 2 1 4 4 H 1.48497 * 109.47056 * 270.00143 * 3 2 1 5 5 H 1.48498 * 109.46941 * 30.00253 * 3 2 1 6 6 H 1.48493 * 109.47303 * 150.00150 * 3 2 1 7 7 C 1.39896 * 120.00345 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00550 * 163.86829 * 7 2 1 9 9 C 1.41260 * 119.99646 * 343.87780 * 7 2 1 10 10 C 1.40705 * 120.18906 * 333.81139 * 9 7 2 11 11 C 1.38051 * 119.72036 * 179.74441 * 10 9 7 12 12 N 1.39837 * 119.94850 * 180.25469 * 11 10 9 13 13 C 1.39679 * 120.11112 * 0.49507 * 11 10 9 14 14 F 1.35102 * 119.80981 * 179.75692 * 13 11 10 15 15 C 1.38678 * 120.38547 * 359.48392 * 13 11 10 16 16 C 1.37749 * 120.28027 * 0.27909 * 15 13 11 17 17 Br 1.89100 * 120.06271 * 179.97438 * 16 15 13 18 18 H 0.97006 * 120.00065 * 5.03941 * 1 2 3 19 19 H 1.08002 * 120.13938 * 359.96643 * 10 9 7 20 20 H 0.96998 * 120.00221 * 180.23739 * 12 11 10 21 21 H 0.97003 * 119.99506 * 0.23744 * 12 11 10 22 22 H 1.07997 * 119.86091 * 180.25273 * 15 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 2.4901 2.0464 -1.4000 5 1 1.4401 2.6527 0.7001 6 1 3.5402 1.4402 0.7000 7 6 2.0082 -1.2115 -0.0005 8 1 3.0563 -1.2298 -0.2604 9 6 1.3436 -2.4109 0.3386 10 6 0.2132 -2.3811 1.1760 11 6 -0.4321 -3.5585 1.4970 12 7 -1.5591 -3.5338 2.3244 13 6 0.0418 -4.7751 1.0007 14 9 -0.5914 -5.9243 1.3227 15 6 1.1553 -4.8098 0.1748 16 6 1.8086 -3.6441 -0.1597 17 35 3.3267 -3.6986 -1.2858 18 1 -0.4850 0.8368 -0.0738 19 1 -0.1503 -1.4406 1.5630 20 1 -2.0111 -4.3610 2.5532 21 1 -1.8889 -2.6894 2.6695 22 1 1.5121 -5.7548 -0.2075 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575714396.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:52:45 Heat of formation + Delta-G solvation = -52.060432 kcal Electronic energy + Delta-G solvation = -11906.996629 eV Core-core repulsion = 9421.127419 eV Total energy + Delta-G solvation = -2485.869210 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 258.970 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.28307 -39.45210 -35.98733 -34.93942 -31.51007 -31.33641 -28.58087 -26.79522 -23.39016 -22.16518 -19.42549 -17.98610 -17.92330 -16.99293 -16.48965 -16.12900 -15.58274 -14.90751 -14.50333 -13.90983 -13.73210 -13.43846 -12.83899 -12.77473 -12.38417 -12.09422 -11.83148 -11.64453 -11.09183 -10.59272 -10.41843 -9.35441 -8.71540 -8.15125 -6.42593 0.81125 0.88933 1.36299 1.43312 1.50601 1.57524 2.21558 2.63531 3.18192 3.53763 3.92341 4.27051 4.90586 4.94409 5.20984 5.29112 5.45189 5.73240 5.93632 6.04346 6.39556 6.73934 6.83363 6.90133 7.15484 8.26700 Molecular weight = 258.97amu Principal moments of inertia in cm(-1) A = 0.018196 B = 0.012779 C = 0.007663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.462892 B = 2190.604560 C = 3652.920781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.806 5.806 2 C 0.042 3.958 3 Si 0.978 3.022 4 H -0.263 1.263 5 H -0.265 1.265 6 H -0.257 1.257 7 C -0.466 4.466 8 H 0.092 0.908 9 C 0.131 3.869 10 C -0.237 4.237 11 C 0.213 3.787 12 N -0.870 5.870 13 C -0.118 4.118 14 F -0.165 7.165 15 C -0.053 4.053 16 C -0.225 4.225 17 Br -0.077 7.077 18 H 0.292 0.708 19 H 0.123 0.877 20 H 0.399 0.601 21 H 0.403 0.597 22 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.802 -1.326 0.543 2.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.430 5.430 2 C -0.176 4.176 3 Si 0.799 3.201 4 H -0.187 1.187 5 H -0.190 1.190 6 H -0.181 1.181 7 C -0.494 4.494 8 H 0.110 0.890 9 C 0.125 3.875 10 C -0.263 4.263 11 C 0.108 3.892 12 N -0.412 5.412 13 C -0.142 4.142 14 F -0.144 7.144 15 C -0.074 4.074 16 C -0.306 4.306 17 Br 0.007 6.993 18 H 0.103 0.897 19 H 0.141 0.859 20 H 0.228 0.772 21 H 0.233 0.767 22 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 2.162 -1.246 0.160 2.500 hybrid contribution -0.606 0.362 0.381 0.801 sum 1.556 -0.885 0.541 1.870 Atomic orbital electron populations 1.69853 1.08909 1.31072 1.33160 1.26749 0.95478 1.04354 0.91013 0.85236 0.79308 0.75940 0.79639 1.18732 1.18983 1.18097 1.20001 0.98530 0.91215 1.39619 0.88989 1.17493 0.90662 0.91579 0.87751 1.20534 1.02552 0.95250 1.07932 1.17728 0.88389 0.92288 0.90820 1.42157 1.31002 1.11706 1.56310 1.16748 1.01937 0.80283 1.15234 1.91253 1.82116 1.48172 1.92881 1.20399 0.93538 0.97418 0.96025 1.21280 1.01952 0.95621 1.11776 1.96234 1.38527 1.98945 1.65611 0.89706 0.85910 0.77204 0.76747 0.85453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -38.67 10.96 21.82 0.24 -38.43 14 2 C 0.04 1.95 5.16 85.24 0.44 2.39 14 3 Si 0.98 35.67 29.59 68.60 2.03 37.70 14 4 H -0.26 -9.35 7.11 99.48 0.71 -8.64 14 5 H -0.27 -9.17 7.11 99.48 0.71 -8.47 14 6 H -0.26 -9.31 7.11 99.48 0.71 -8.60 14 7 C -0.47 -23.29 8.43 23.41 0.20 -23.10 14 8 H 0.09 4.50 6.89 -2.91 -0.02 4.48 14 9 C 0.13 6.66 5.56 -21.28 -0.12 6.54 14 10 C -0.24 -11.64 8.50 22.83 0.19 -11.45 14 11 C 0.21 9.52 6.75 38.17 0.26 9.78 14 12 N -0.87 -30.73 9.09 -51.31 -0.47 -31.20 14 13 C -0.12 -5.32 7.33 22.72 0.17 -5.15 14 14 F -0.16 -6.92 16.62 44.97 0.75 -6.17 14 15 C -0.05 -2.36 9.73 22.26 0.22 -2.15 14 16 C -0.23 -10.70 6.28 22.81 0.14 -10.56 14 17 Br -0.08 -3.18 32.09 -20.37 -0.65 -3.83 14 18 H 0.29 12.61 8.30 -92.70 -0.77 11.84 14 19 H 0.12 6.15 6.22 -2.91 -0.02 6.13 14 20 H 0.40 12.41 8.30 -92.71 -0.77 11.64 14 21 H 0.40 12.65 8.84 -92.71 -0.82 11.83 14 22 H 0.13 5.13 8.06 -2.91 -0.02 5.11 14 Total: -1.00 -53.40 224.04 3.09 -50.30 By element: Atomic # 1 Polarization: 25.62 SS G_CDS: -0.30 Total: 25.32 kcal Atomic # 6 Polarization: -35.19 SS G_CDS: 1.50 Total: -33.69 kcal Atomic # 7 Polarization: -69.40 SS G_CDS: -0.23 Total: -69.63 kcal Atomic # 9 Polarization: -6.92 SS G_CDS: 0.75 Total: -6.17 kcal Atomic # 14 Polarization: 35.67 SS G_CDS: 2.03 Total: 37.70 kcal Atomic # 35 Polarization: -3.18 SS G_CDS: -0.65 Total: -3.83 kcal Total: -53.40 3.09 -50.30 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575714396.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.759 kcal (2) G-P(sol) polarization free energy of solvation -53.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds