Wall clock time and date at job start Mon Mar 30 2020 07:52:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30898 * 1 3 3 Si 1.86799 * 119.99954 * 2 1 4 4 H 1.48503 * 109.46943 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47113 * 299.99592 * 3 2 1 6 6 H 1.48496 * 109.47696 * 59.99600 * 3 2 1 7 7 C 1.39918 * 119.99985 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99933 * 196.07043 * 7 2 1 9 9 C 1.41010 * 119.99803 * 16.06990 * 7 2 1 10 10 C 1.41560 * 120.29816 * 46.17384 * 9 7 2 11 11 N 1.38842 * 120.20477 * 0.02984 * 10 9 7 12 12 C 1.38614 * 119.58942 * 180.23068 * 10 9 7 13 13 C 1.38230 * 120.19988 * 359.51784 * 12 10 9 14 14 C 1.39015 * 120.61367 * 0.23613 * 13 12 10 15 15 F 1.35099 * 119.79723 * 180.02562 * 14 13 12 16 16 C 1.37765 * 120.40558 * 359.97438 * 14 13 12 17 17 Br 1.89109 * 120.10657 * 179.97438 * 16 14 13 18 18 H 0.97002 * 119.99414 * 4.02457 * 1 2 3 19 19 H 0.97007 * 119.99997 * 180.20638 * 11 10 9 20 20 H 0.96999 * 120.00058 * 0.19735 * 11 10 9 21 21 H 1.08007 * 119.89963 * 179.79735 * 12 10 9 22 22 H 1.08005 * 119.69383 * 180.25370 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 3.7030 1.3463 -0.0006 5 1 1.8843 2.3964 -1.2126 6 1 1.8842 2.3966 1.2124 7 6 2.0086 -1.2117 0.0005 8 1 3.0569 -1.2299 0.2594 9 6 1.3448 -2.4092 -0.3370 10 6 0.5014 -2.4626 -1.4726 11 7 0.3221 -1.3353 -2.2632 12 6 -0.1477 -3.6460 -1.7881 13 6 0.0353 -4.7698 -1.0043 14 6 0.8657 -4.7282 0.1098 15 9 1.0332 -5.8365 0.8640 16 6 1.5198 -3.5641 0.4489 17 35 2.6468 -3.5168 1.9667 18 1 -0.4849 0.8380 -0.0590 19 1 -0.2589 -1.3744 -3.0390 20 1 0.7777 -0.5087 -2.0396 21 1 -0.7950 -3.6914 -2.6515 22 1 -0.4712 -5.6887 -1.2600 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575714449.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:52:25 Heat of formation + Delta-G solvation = -41.292940 kcal Electronic energy + Delta-G solvation = -12124.439462 eV Core-core repulsion = 9639.037165 eV Total energy + Delta-G solvation = -2485.402297 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 258.970 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -49.44279 -39.70314 -35.68259 -34.41044 -32.49756 -30.62104 -28.65045 -26.90956 -22.94343 -22.41941 -19.52322 -17.94232 -17.28336 -17.25099 -16.67010 -16.20788 -15.65441 -14.80356 -14.23500 -14.00080 -13.57615 -13.38902 -13.14548 -12.72944 -12.50257 -12.08314 -11.85515 -11.41712 -10.93483 -10.67664 -10.59635 -9.25607 -8.60944 -7.92697 -6.30484 0.67224 0.92072 1.25280 1.43242 1.45464 1.56272 2.26213 2.70068 3.38529 3.61843 3.85485 4.36458 4.65352 4.94062 5.22916 5.31261 5.42469 5.64638 5.77329 6.20258 6.40370 6.61316 6.92578 7.16018 7.50446 8.41570 Molecular weight = 258.97amu Principal moments of inertia in cm(-1) A = 0.024362 B = 0.012844 C = 0.008794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.059795 B = 2179.500731 C = 3183.101179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.044 3.956 3 Si 0.961 3.039 4 H -0.265 1.265 5 H -0.255 1.255 6 H -0.278 1.278 7 C -0.491 4.491 8 H 0.076 0.924 9 C 0.079 3.921 10 C 0.181 3.819 11 N -0.846 5.846 12 C -0.178 4.178 13 C -0.181 4.181 14 C 0.049 3.951 15 F -0.158 7.158 16 C -0.196 4.196 17 Br -0.073 7.073 18 H 0.287 0.713 19 H 0.392 0.608 20 H 0.396 0.604 21 H 0.139 0.861 22 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.052 -1.011 -2.350 2.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.169 4.169 3 Si 0.783 3.217 4 H -0.189 1.189 5 H -0.179 1.179 6 H -0.204 1.204 7 C -0.522 4.522 8 H 0.094 0.906 9 C 0.072 3.928 10 C 0.073 3.927 11 N -0.385 5.385 12 C -0.203 4.203 13 C -0.202 4.202 14 C 0.026 3.974 15 F -0.137 7.137 16 C -0.278 4.278 17 Br 0.012 6.988 18 H 0.097 0.903 19 H 0.220 0.780 20 H 0.227 0.773 21 H 0.156 0.844 22 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 1.293 -0.877 -1.679 2.293 hybrid contribution 0.004 0.718 -0.101 0.725 sum 1.297 -0.158 -1.780 2.208 Atomic orbital electron populations 1.69944 1.08025 1.30508 1.36460 1.26275 0.95225 1.02855 0.92561 0.85461 0.79602 0.77691 0.78960 1.18932 1.17914 1.20372 1.19277 0.97376 0.91198 1.44353 0.90633 1.17160 0.93257 0.91906 0.90432 1.18174 0.96205 0.87937 0.90416 1.42107 1.54272 1.11599 1.30515 1.20305 1.05126 0.91696 1.03193 1.20491 1.03357 1.00240 0.96104 1.17225 1.03641 0.81960 0.94535 1.91345 1.94928 1.51590 1.75836 1.21893 1.09263 0.97784 0.98855 1.96263 1.65176 1.99186 1.38219 0.90285 0.77977 0.77274 0.84369 0.84278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -39.01 11.38 21.83 0.25 -38.76 14 2 C 0.04 2.04 3.49 85.24 0.30 2.33 14 3 Si 0.96 35.81 29.59 68.60 2.03 37.84 14 4 H -0.27 -10.07 7.11 99.48 0.71 -9.36 14 5 H -0.26 -8.70 7.11 99.48 0.71 -8.00 14 6 H -0.28 -10.50 7.11 99.48 0.71 -9.79 14 7 C -0.49 -24.44 7.66 23.36 0.18 -24.26 14 8 H 0.08 3.85 7.62 -2.91 -0.02 3.82 14 9 C 0.08 3.96 5.26 -21.16 -0.11 3.85 14 10 C 0.18 8.12 6.26 38.94 0.24 8.36 14 11 N -0.85 -33.03 8.03 -50.40 -0.40 -33.44 14 12 C -0.18 -7.14 9.87 22.36 0.22 -6.92 14 13 C -0.18 -7.42 10.01 22.45 0.22 -7.20 14 14 C 0.05 2.29 7.25 22.34 0.16 2.45 14 15 F -0.16 -7.07 16.70 44.97 0.75 -6.32 14 16 C -0.20 -9.65 6.28 22.78 0.14 -9.51 14 17 Br -0.07 -3.28 32.05 -20.37 -0.65 -3.93 14 18 H 0.29 12.41 8.30 -92.71 -0.77 11.64 14 19 H 0.39 12.45 8.84 -92.70 -0.82 11.63 14 20 H 0.40 16.12 5.62 -92.71 -0.52 15.60 14 21 H 0.14 4.51 8.06 -2.91 -0.02 4.48 14 22 H 0.14 4.78 8.06 -2.91 -0.02 4.76 14 Total: -1.00 -53.98 221.63 3.27 -50.71 By element: Atomic # 1 Polarization: 24.85 SS G_CDS: -0.06 Total: 24.79 kcal Atomic # 6 Polarization: -32.25 SS G_CDS: 1.36 Total: -30.89 kcal Atomic # 7 Polarization: -72.04 SS G_CDS: -0.16 Total: -72.20 kcal Atomic # 9 Polarization: -7.07 SS G_CDS: 0.75 Total: -6.32 kcal Atomic # 14 Polarization: 35.81 SS G_CDS: 2.03 Total: 37.84 kcal Atomic # 35 Polarization: -3.28 SS G_CDS: -0.65 Total: -3.93 kcal Total: -53.98 3.27 -50.71 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575714449.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.414 kcal (2) G-P(sol) polarization free energy of solvation -53.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds