Wall clock time and date at job start Mon Mar 30 2020 07:50:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30845 * 1 3 3 Si 1.86800 * 120.00006 * 2 1 4 4 H 1.48497 * 109.47065 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47119 * 119.99853 * 3 2 1 6 6 H 1.48501 * 109.47071 * 240.00335 * 3 2 1 7 7 C 1.39916 * 119.99952 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00133 * 206.36472 * 7 2 1 9 9 C 1.41368 * 119.99991 * 26.36702 * 7 2 1 10 10 C 1.40633 * 120.20249 * 25.50721 * 9 7 2 11 11 C 1.38243 * 119.73731 * 180.02562 * 10 9 7 12 12 N 1.39709 * 119.92708 * 179.97438 * 11 10 9 13 13 C 1.39342 * 120.14647 * 359.97438 * 11 10 9 14 14 C 1.38625 * 120.41946 * 0.02562 * 13 11 10 15 15 F 1.35098 * 119.87250 * 179.97438 * 14 13 11 16 16 C 1.38053 * 120.26062 * 359.71606 * 14 13 11 17 17 Br 1.89101 * 120.07946 * 180.27924 * 16 14 13 18 18 H 0.97000 * 120.00001 * 185.78687 * 1 2 3 19 19 H 1.07996 * 120.13379 * 359.97346 * 10 9 7 20 20 H 0.96998 * 119.99785 * 0.02562 * 12 11 10 21 21 H 0.96995 * 119.99563 * 179.97438 * 12 11 10 22 22 H 1.08004 * 119.78852 * 179.97438 * 13 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2425 1.6177 0.0000 4 1 1.2775 2.7464 -0.0006 5 1 3.0961 1.6964 1.2125 6 1 3.0961 1.6964 -1.2125 7 6 2.0080 -1.2117 0.0005 8 1 3.0038 -1.2602 0.4159 9 6 1.4115 -2.3725 -0.5427 10 6 0.4137 -2.2606 -1.5274 11 6 -0.1636 -3.4021 -2.0516 12 7 -1.1556 -3.2954 -3.0296 13 6 0.2417 -4.6588 -1.6067 14 6 1.2247 -4.7765 -0.6364 15 9 1.6089 -6.0005 -0.2127 16 6 1.8164 -3.6481 -0.1050 17 35 3.1624 -3.8148 1.2127 18 1 -0.4850 -0.8358 0.0847 19 1 0.0990 -1.2867 -1.8721 20 1 -1.4382 -2.4211 -3.3403 21 1 -1.5610 -4.0957 -3.3983 22 1 -0.2135 -5.5468 -2.0199 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575714735.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:50:07 Heat of formation + Delta-G solvation = -42.279059 kcal Electronic energy + Delta-G solvation = -11951.371995 eV Core-core repulsion = 9465.926937 eV Total energy + Delta-G solvation = -2485.445058 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 258.970 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -47.95379 -37.96532 -34.63564 -32.99850 -29.95679 -29.15495 -26.76482 -25.26256 -21.41479 -20.75443 -18.24347 -16.49372 -16.09770 -14.80666 -14.66805 -14.46225 -14.13906 -13.96618 -13.09323 -12.41874 -11.99090 -11.39670 -11.23973 -10.74577 -10.60187 -10.48880 -10.35985 -9.88863 -9.19230 -8.85091 -8.71841 -7.72678 -7.44049 -6.63353 -4.70829 2.48688 2.62150 3.09720 3.11719 3.20405 3.31320 3.91813 4.36170 4.55729 5.21561 5.47399 6.08176 6.41303 6.62297 6.89725 7.09992 7.35476 7.41731 7.51214 7.82585 7.93760 8.21436 8.47296 8.55725 8.66678 9.86714 Molecular weight = 258.97amu Principal moments of inertia in cm(-1) A = 0.019780 B = 0.013097 C = 0.008128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.196173 B = 2137.413443 C = 3444.088030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.778 5.778 2 C 0.042 3.958 3 Si 1.064 2.936 4 H -0.273 1.273 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.492 4.492 8 H 0.093 0.907 9 C 0.157 3.843 10 C -0.297 4.297 11 C 0.268 3.732 12 N -0.885 5.885 13 C -0.347 4.347 14 C 0.193 3.807 15 F -0.151 7.151 16 C -0.264 4.264 17 Br -0.090 7.090 18 H 0.303 0.697 19 H 0.114 0.886 20 H 0.392 0.608 21 H 0.387 0.613 22 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.273 -2.237 -1.237 2.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.400 5.400 2 C -0.183 4.183 3 Si 0.887 3.113 4 H -0.198 1.198 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.519 4.519 8 H 0.111 0.889 9 C 0.152 3.848 10 C -0.322 4.322 11 C 0.164 3.836 12 N -0.424 5.424 13 C -0.371 4.371 14 C 0.171 3.829 15 F -0.130 7.130 16 C -0.345 4.345 17 Br -0.006 7.006 18 H 0.117 0.883 19 H 0.132 0.868 20 H 0.220 0.780 21 H 0.214 0.786 22 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 1.565 -0.717 -0.731 1.870 hybrid contribution -0.426 -1.965 -0.494 2.070 sum 1.139 -2.682 -1.225 3.161 Atomic orbital electron populations 1.70444 1.08303 1.34753 1.26457 1.27131 0.95578 1.04476 0.91086 0.83643 0.75774 0.73483 0.78416 1.19764 1.19725 1.19719 1.20828 1.04042 0.93507 1.33497 0.88895 1.16907 0.88976 0.90245 0.88714 1.20482 1.09050 0.95875 1.06815 1.17217 0.86697 0.92973 0.86708 1.42375 1.44358 1.09692 1.45983 1.19551 1.10563 0.95972 1.10981 1.16868 0.94244 0.77920 0.93894 1.91388 1.90255 1.42350 1.89029 1.21295 1.09245 0.94806 1.09167 1.96260 1.51990 1.98147 1.54240 0.88310 0.86773 0.78029 0.78619 0.87522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.41 12.33 55.55 0.68 -18.72 14 2 C 0.04 1.00 4.91 -17.34 -0.09 0.92 14 3 Si 1.06 20.53 30.01 -169.99 -5.10 15.43 14 4 H -0.27 -5.21 7.11 56.52 0.40 -4.81 14 5 H -0.27 -5.04 7.11 56.52 0.40 -4.64 14 6 H -0.27 -5.08 7.11 56.52 0.40 -4.68 14 7 C -0.49 -12.46 8.38 -37.76 -0.32 -12.78 14 8 H 0.09 2.34 6.94 -52.49 -0.36 1.97 14 9 C 0.16 4.02 5.29 -106.83 -0.57 3.46 14 10 C -0.30 -7.13 7.81 -38.68 -0.30 -7.43 14 11 C 0.27 5.77 6.74 -83.86 -0.57 5.21 14 12 N -0.88 -14.74 9.09 32.37 0.29 -14.45 14 13 C -0.35 -7.63 9.87 -39.03 -0.39 -8.02 14 14 C 0.19 4.56 7.25 -39.51 -0.29 4.27 14 15 F -0.15 -3.43 16.71 2.25 0.04 -3.39 14 16 C -0.26 -6.54 6.29 -38.68 -0.24 -6.78 14 17 Br -0.09 -2.01 31.64 -68.01 -2.15 -4.17 14 18 H 0.30 7.81 6.77 -40.82 -0.28 7.54 14 19 H 0.11 2.78 6.53 -52.49 -0.34 2.43 14 20 H 0.39 5.93 8.84 -40.82 -0.36 5.57 14 21 H 0.39 5.40 8.84 -40.82 -0.36 5.04 14 22 H 0.11 2.10 8.06 -52.48 -0.42 1.68 14 LS Contribution 223.61 15.07 3.37 3.37 Total: -1.00 -26.44 223.61 -6.54 -32.97 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -0.92 Total: 10.10 kcal Atomic # 6 Polarization: -18.40 SS G_CDS: -2.75 Total: -21.15 kcal Atomic # 7 Polarization: -34.15 SS G_CDS: 0.98 Total: -33.17 kcal Atomic # 9 Polarization: -3.43 SS G_CDS: 0.04 Total: -3.39 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.10 Total: 15.43 kcal Atomic # 35 Polarization: -2.01 SS G_CDS: -2.15 Total: -4.17 kcal Total LS contribution 3.37 Total: 3.37 kcal Total: -26.44 -6.54 -32.97 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575714735.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.304 kcal (2) G-P(sol) polarization free energy of solvation -26.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds