Wall clock time and date at job start Mon Mar 30 2020 07:52:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30864 * 1 3 3 Si 1.86804 * 119.99702 * 2 1 4 4 H 1.48495 * 109.47024 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47290 * 300.00115 * 3 2 1 6 6 H 1.48498 * 109.47070 * 60.00148 * 3 2 1 7 7 C 1.39900 * 120.00242 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99825 * 197.93127 * 7 2 1 9 9 C 1.41310 * 120.00025 * 17.93548 * 7 2 1 10 10 C 1.40693 * 120.17475 * 204.53332 * 9 7 2 11 11 C 1.38108 * 119.72369 * 180.02562 * 10 9 7 12 12 N 1.39809 * 119.95412 * 180.26050 * 11 10 9 13 13 C 1.39616 * 120.09067 * 359.97438 * 11 10 9 14 14 F 1.35102 * 119.81852 * 179.97438 * 13 11 10 15 15 C 1.38827 * 120.36469 * 359.97438 * 13 11 10 16 16 Br 1.89094 * 119.86554 * 180.02562 * 15 13 11 17 17 C 1.37701 * 120.26878 * 0.03808 * 15 13 11 18 18 H 0.96993 * 120.00357 * 359.97438 * 1 2 3 19 19 H 1.07993 * 120.13907 * 0.04379 * 10 9 7 20 20 H 0.97001 * 120.00260 * 179.72270 * 12 11 10 21 21 H 0.97005 * 119.99826 * 359.71857 * 12 11 10 22 22 H 1.08001 * 120.04273 * 179.97438 * 17 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2426 1.6178 0.0000 4 1 3.7025 1.3465 0.0006 5 1 1.8838 2.3965 -1.2125 6 1 1.8838 2.3965 1.2125 7 6 2.0082 -1.2115 0.0005 8 1 3.0489 -1.2341 0.2885 9 6 1.3532 -2.4058 -0.3758 10 6 1.8257 -3.6475 0.0870 11 6 1.1787 -4.8090 -0.2870 12 7 1.6409 -6.0451 0.1745 13 6 0.0603 -4.7499 -1.1205 14 9 -0.5681 -5.8895 -1.4834 15 6 -0.4098 -3.5265 -1.5785 16 35 -1.9263 -3.4628 -2.7062 17 6 0.2240 -2.3593 -1.2151 18 1 -0.4850 0.8400 0.0004 19 1 2.6905 -3.6923 0.7323 20 1 1.1846 -6.8610 -0.0845 21 1 2.4179 -6.0869 0.7537 22 1 -0.1446 -1.4096 -1.5738 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575714817.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:52:51 Heat of formation + Delta-G solvation = -35.210388 kcal Electronic energy + Delta-G solvation = -11862.452240 eV Core-core repulsion = 9377.313702 eV Total energy + Delta-G solvation = -2485.138538 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 258.970 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -47.46878 -37.69830 -34.46636 -32.99773 -30.76288 -28.59344 -27.17926 -25.20192 -21.09154 -20.89363 -17.51630 -16.56218 -15.97005 -15.32620 -14.90960 -14.38354 -13.92882 -13.27626 -12.56877 -12.07819 -11.99681 -11.60709 -11.28322 -11.07641 -10.76736 -10.52500 -10.23608 -9.80160 -9.51342 -9.30000 -8.82468 -7.49851 -6.95562 -6.55437 -4.54940 2.41354 2.66523 2.78678 3.00600 3.04967 3.07551 3.80964 4.36790 4.68220 5.40345 5.64211 6.39547 6.59415 6.77626 6.92212 7.01271 7.37199 7.56454 7.60882 7.86805 8.21570 8.38252 8.50194 8.67875 8.71528 9.99015 Molecular weight = 258.97amu Principal moments of inertia in cm(-1) A = 0.024260 B = 0.009725 C = 0.007085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.873356 B = 2878.380626 C = 3951.009645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.779 5.779 2 C 0.075 3.925 3 Si 0.912 3.088 4 H -0.258 1.258 5 H -0.269 1.269 6 H -0.273 1.273 7 C -0.448 4.448 8 H 0.085 0.915 9 C 0.138 3.862 10 C -0.272 4.272 11 C 0.219 3.781 12 N -0.887 5.887 13 C -0.096 4.096 14 F -0.163 7.163 15 C -0.050 4.050 16 Br -0.091 7.091 17 C -0.151 4.151 18 H 0.285 0.715 19 H 0.105 0.895 20 H 0.390 0.610 21 H 0.392 0.608 22 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.409 -3.082 -2.025 3.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.402 5.402 2 C -0.145 4.145 3 Si 0.735 3.265 4 H -0.182 1.182 5 H -0.194 1.194 6 H -0.198 1.198 7 C -0.476 4.476 8 H 0.103 0.897 9 C 0.133 3.867 10 C -0.296 4.296 11 C 0.116 3.884 12 N -0.429 5.429 13 C -0.122 4.122 14 F -0.142 7.142 15 C -0.130 4.130 16 Br -0.006 7.006 17 C -0.173 4.173 18 H 0.097 0.903 19 H 0.124 0.876 20 H 0.216 0.784 21 H 0.219 0.781 22 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -1.243 -2.864 -2.472 3.983 hybrid contribution 0.610 0.213 0.401 0.760 sum -0.634 -2.651 -2.071 3.423 Atomic orbital electron populations 1.69829 1.07680 1.29855 1.32864 1.26006 0.94796 1.01715 0.92015 0.86195 0.80984 0.80481 0.78793 1.18197 1.19438 1.19811 1.19616 0.98375 0.90814 1.38840 0.89687 1.17314 0.89883 0.91923 0.87562 1.20376 1.06724 0.90688 1.11861 1.17265 0.91754 0.86500 0.92874 1.42184 1.36361 1.05326 1.58998 1.16261 1.00920 0.80682 1.14303 1.91265 1.82269 1.49016 1.91698 1.21265 0.95213 0.95133 1.01372 1.96425 1.39575 1.99230 1.65412 1.21159 0.99193 0.95292 1.01634 0.90338 0.87644 0.78351 0.78090 0.84674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.08 10.96 55.54 0.61 -18.47 14 2 C 0.07 1.76 5.13 -17.34 -0.09 1.67 14 3 Si 0.91 17.51 29.60 -169.99 -5.03 12.48 14 4 H -0.26 -4.90 7.11 56.52 0.40 -4.50 14 5 H -0.27 -5.13 7.11 56.52 0.40 -4.73 14 6 H -0.27 -5.18 7.11 56.52 0.40 -4.77 14 7 C -0.45 -11.08 9.04 -37.79 -0.34 -11.42 14 8 H 0.09 2.00 7.91 -52.48 -0.41 1.58 14 9 C 0.14 3.49 5.57 -106.84 -0.60 2.90 14 10 C -0.27 -6.31 9.62 -38.70 -0.37 -6.69 14 11 C 0.22 4.85 6.75 -83.75 -0.57 4.28 14 12 N -0.89 -15.42 9.09 32.42 0.29 -15.13 14 13 C -0.10 -2.26 7.30 -38.85 -0.28 -2.55 14 14 F -0.16 -3.67 16.07 2.25 0.04 -3.64 14 15 C -0.05 -1.20 6.22 -39.56 -0.25 -1.44 14 16 Br -0.09 -1.90 33.25 -68.01 -2.26 -4.16 14 17 C -0.15 -3.82 8.42 -38.82 -0.33 -4.14 14 18 H 0.29 6.33 8.30 -40.82 -0.34 5.99 14 19 H 0.11 2.25 8.06 -52.49 -0.42 1.83 14 20 H 0.39 6.21 8.31 -40.82 -0.34 5.87 14 21 H 0.39 5.73 8.84 -40.82 -0.36 5.37 14 22 H 0.14 3.52 6.15 -52.49 -0.32 3.20 14 LS Contribution 225.90 15.07 3.40 3.40 Total: -1.00 -26.30 225.90 -6.76 -33.06 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -0.99 Total: 9.84 kcal Atomic # 6 Polarization: -14.57 SS G_CDS: -2.82 Total: -17.39 kcal Atomic # 7 Polarization: -34.50 SS G_CDS: 0.90 Total: -33.60 kcal Atomic # 9 Polarization: -3.67 SS G_CDS: 0.04 Total: -3.64 kcal Atomic # 14 Polarization: 17.51 SS G_CDS: -5.03 Total: 12.48 kcal Atomic # 35 Polarization: -1.90 SS G_CDS: -2.26 Total: -4.16 kcal Total LS contribution 3.40 Total: 3.40 kcal Total: -26.30 -6.76 -33.06 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575714817.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.149 kcal (2) G-P(sol) polarization free energy of solvation -26.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds