Wall clock time and date at job start Mon Mar 30 2020 07:52:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30864 * 1 3 3 Si 1.86804 * 119.99702 * 2 1 4 4 H 1.48495 * 109.47024 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47290 * 300.00115 * 3 2 1 6 6 H 1.48498 * 109.47070 * 60.00148 * 3 2 1 7 7 C 1.39900 * 120.00242 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99825 * 197.93127 * 7 2 1 9 9 C 1.41310 * 120.00025 * 17.93548 * 7 2 1 10 10 C 1.40693 * 120.17475 * 204.53332 * 9 7 2 11 11 C 1.38108 * 119.72369 * 180.02562 * 10 9 7 12 12 N 1.39809 * 119.95412 * 180.26050 * 11 10 9 13 13 C 1.39616 * 120.09067 * 359.97438 * 11 10 9 14 14 F 1.35102 * 119.81852 * 179.97438 * 13 11 10 15 15 C 1.38827 * 120.36469 * 359.97438 * 13 11 10 16 16 Br 1.89094 * 119.86554 * 180.02562 * 15 13 11 17 17 C 1.37701 * 120.26878 * 0.03808 * 15 13 11 18 18 H 0.96993 * 120.00357 * 359.97438 * 1 2 3 19 19 H 1.07993 * 120.13907 * 0.04379 * 10 9 7 20 20 H 0.97001 * 120.00260 * 179.72270 * 12 11 10 21 21 H 0.97005 * 119.99826 * 359.71857 * 12 11 10 22 22 H 1.08001 * 120.04273 * 179.97438 * 17 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2426 1.6178 0.0000 4 1 3.7025 1.3465 0.0006 5 1 1.8838 2.3965 -1.2125 6 1 1.8838 2.3965 1.2125 7 6 2.0082 -1.2115 0.0005 8 1 3.0489 -1.2341 0.2885 9 6 1.3532 -2.4058 -0.3758 10 6 1.8257 -3.6475 0.0870 11 6 1.1787 -4.8090 -0.2870 12 7 1.6409 -6.0451 0.1745 13 6 0.0603 -4.7499 -1.1205 14 9 -0.5681 -5.8895 -1.4834 15 6 -0.4098 -3.5265 -1.5785 16 35 -1.9263 -3.4628 -2.7062 17 6 0.2240 -2.3593 -1.2151 18 1 -0.4850 0.8400 0.0004 19 1 2.6905 -3.6923 0.7323 20 1 1.1846 -6.8610 -0.0845 21 1 2.4179 -6.0869 0.7537 22 1 -0.1446 -1.4096 -1.5738 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575714817.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:52:49 Heat of formation + Delta-G solvation = -50.502393 kcal Electronic energy + Delta-G solvation = -11863.115351 eV Core-core repulsion = 9377.313702 eV Total energy + Delta-G solvation = -2485.801649 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 258.970 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -49.26856 -39.47514 -36.18132 -34.72653 -32.54528 -30.37547 -28.92198 -27.02931 -22.87738 -22.69761 -19.29849 -18.28322 -17.72403 -17.02604 -16.54496 -16.18517 -15.63687 -14.95318 -14.32873 -13.84869 -13.77885 -13.37376 -12.83734 -12.75831 -12.51815 -12.22059 -11.88326 -11.57614 -11.24491 -11.03618 -10.56887 -9.33183 -8.71839 -8.24016 -6.41881 0.59419 0.85887 1.00591 1.43779 1.51108 1.59227 2.21079 2.59128 3.17486 3.55532 3.84278 4.58100 4.82222 4.95895 5.14643 5.25320 5.54876 5.75854 5.84065 6.02197 6.44746 6.64933 6.82829 6.90906 7.15717 8.25498 Molecular weight = 258.97amu Principal moments of inertia in cm(-1) A = 0.024260 B = 0.009725 C = 0.007085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.873356 B = 2878.380626 C = 3951.009645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.037 3.963 3 Si 0.985 3.015 4 H -0.253 1.253 5 H -0.266 1.266 6 H -0.266 1.266 7 C -0.474 4.474 8 H 0.090 0.910 9 C 0.114 3.886 10 C -0.284 4.284 11 C 0.227 3.773 12 N -0.868 5.868 13 C -0.114 4.114 14 F -0.159 7.159 15 C -0.061 4.061 16 Br -0.067 7.067 17 C -0.174 4.174 18 H 0.293 0.707 19 H 0.121 0.879 20 H 0.400 0.600 21 H 0.408 0.592 22 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.267 -3.089 -1.765 3.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C -0.180 4.180 3 Si 0.805 3.195 4 H -0.177 1.177 5 H -0.191 1.191 6 H -0.191 1.191 7 C -0.502 4.502 8 H 0.108 0.892 9 C 0.109 3.891 10 C -0.309 4.309 11 C 0.121 3.879 12 N -0.410 5.410 13 C -0.140 4.140 14 F -0.138 7.138 15 C -0.141 4.141 16 Br 0.018 6.982 17 C -0.196 4.196 18 H 0.104 0.896 19 H 0.139 0.861 20 H 0.228 0.772 21 H 0.238 0.762 22 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -0.559 -2.924 -2.200 3.701 hybrid contribution 0.348 0.118 0.316 0.485 sum -0.211 -2.806 -1.884 3.386 Atomic orbital electron populations 1.69878 1.09182 1.31222 1.33106 1.26849 0.95432 1.04808 0.90930 0.85108 0.79640 0.75852 0.78912 1.17658 1.19059 1.19089 1.19913 0.98819 0.91652 1.39855 0.89165 1.17680 0.90303 0.93167 0.87926 1.20533 1.07454 0.90488 1.12396 1.17311 0.90928 0.87820 0.91842 1.42099 1.36558 1.04117 1.58275 1.16438 1.01714 0.80742 1.15099 1.91266 1.82258 1.48554 1.91725 1.21488 0.95967 0.95134 1.01544 1.96405 1.38029 1.99241 1.64518 1.21045 1.00320 0.95123 1.03135 0.89576 0.86117 0.77170 0.76236 0.86133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -39.95 10.96 21.82 0.24 -39.71 14 2 C 0.04 1.75 5.13 85.24 0.44 2.18 14 3 Si 0.98 35.31 29.60 68.60 2.03 37.34 14 4 H -0.25 -8.79 7.11 99.48 0.71 -8.08 14 5 H -0.27 -9.32 7.11 99.48 0.71 -8.61 14 6 H -0.27 -9.20 7.11 99.48 0.71 -8.49 14 7 C -0.47 -23.53 9.04 23.43 0.21 -23.31 14 8 H 0.09 4.22 7.91 -2.91 -0.02 4.20 14 9 C 0.11 5.81 5.57 -21.30 -0.12 5.70 14 10 C -0.28 -13.00 9.62 22.84 0.22 -12.78 14 11 C 0.23 9.73 6.75 38.17 0.26 9.99 14 12 N -0.87 -28.12 9.09 -51.34 -0.47 -28.58 14 13 C -0.11 -5.28 7.30 22.74 0.17 -5.12 14 14 F -0.16 -6.92 16.07 44.97 0.72 -6.20 14 15 C -0.06 -2.94 6.22 22.28 0.14 -2.80 14 16 Br -0.07 -2.75 33.25 -20.37 -0.68 -3.43 14 17 C -0.17 -8.94 8.42 22.76 0.19 -8.75 14 18 H 0.29 13.02 8.30 -92.71 -0.77 12.25 14 19 H 0.12 5.01 8.06 -2.91 -0.02 4.99 14 20 H 0.40 11.70 8.31 -92.71 -0.77 10.93 14 21 H 0.41 10.80 8.84 -92.70 -0.82 9.98 14 22 H 0.12 6.45 6.15 -2.91 -0.02 6.43 14 Total: -1.00 -54.92 225.90 3.05 -51.87 By element: Atomic # 1 Polarization: 23.90 SS G_CDS: -0.30 Total: 23.59 kcal Atomic # 6 Polarization: -36.39 SS G_CDS: 1.50 Total: -34.89 kcal Atomic # 7 Polarization: -68.06 SS G_CDS: -0.23 Total: -68.29 kcal Atomic # 9 Polarization: -6.92 SS G_CDS: 0.72 Total: -6.20 kcal Atomic # 14 Polarization: 35.31 SS G_CDS: 2.03 Total: 37.34 kcal Atomic # 35 Polarization: -2.75 SS G_CDS: -0.68 Total: -3.43 kcal Total: -54.92 3.05 -51.87 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575714817.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.370 kcal (2) G-P(sol) polarization free energy of solvation -54.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds