Wall clock time and date at job start Mon Mar 30 2020 07:52:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30889 * 1 3 3 Si 1.86798 * 120.00531 * 2 1 4 4 H 1.48501 * 109.47158 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47262 * 300.00211 * 3 2 1 6 6 H 1.48506 * 109.47019 * 60.00390 * 3 2 1 7 7 C 1.39923 * 119.99385 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99845 * 164.03219 * 7 2 1 9 9 C 1.41033 * 120.00295 * 344.30172 * 7 2 1 10 10 C 1.41471 * 120.29846 * 313.41375 * 9 7 2 11 11 N 1.38925 * 120.23195 * 359.97438 * 10 9 7 12 12 C 1.38835 * 119.53379 * 179.76745 * 10 9 7 13 13 F 1.35099 * 119.93337 * 180.25166 * 12 10 9 14 14 C 1.38350 * 120.13547 * 0.50682 * 12 10 9 15 15 C 1.38848 * 120.62188 * 359.74556 * 14 12 10 16 16 C 1.37557 * 120.46580 * 359.97438 * 15 14 12 17 17 Br 1.89097 * 120.07855 * 179.97438 * 16 15 14 18 18 H 0.96999 * 119.99626 * 5.40442 * 1 2 3 19 19 H 0.96994 * 120.00163 * 359.97438 * 11 10 9 20 20 H 0.97006 * 119.99810 * 179.97438 * 11 10 9 21 21 H 1.08001 * 119.69046 * 179.71465 * 14 12 10 22 22 H 1.07999 * 119.76773 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2430 1.6176 0.0000 4 1 3.7030 1.3461 -0.0006 5 1 1.8843 2.3964 -1.2124 6 1 1.8844 2.3963 1.2126 7 6 2.0084 -1.2118 -0.0005 8 1 3.0572 -1.2299 -0.2579 9 6 1.3426 -2.4106 0.3294 10 6 0.5002 -2.4700 1.4644 11 7 0.3227 -1.3474 2.2633 12 6 -0.1513 -3.6569 1.7717 13 9 -0.9617 -3.7212 2.8507 14 6 0.0318 -4.7753 0.9782 15 6 0.8613 -4.7253 -0.1341 16 6 1.5146 -3.5608 -0.4651 17 35 2.6424 -3.5052 -1.9819 18 1 -0.4849 0.8363 -0.0791 19 1 0.7774 -0.5192 2.0440 20 1 -0.2560 -1.3919 3.0406 21 1 -0.4750 -5.6962 1.2265 22 1 0.9946 -5.6067 -0.7437 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575714932.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:52:04 Heat of formation + Delta-G solvation = -43.207326 kcal Electronic energy + Delta-G solvation = -12161.612952 eV Core-core repulsion = 9676.127641 eV Total energy + Delta-G solvation = -2485.485311 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 258.970 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -49.47335 -39.61901 -35.90767 -34.40293 -32.30069 -30.66455 -28.72351 -26.96273 -22.92137 -22.36307 -19.50195 -18.31607 -17.21969 -17.09458 -16.58795 -16.22257 -15.57559 -15.04364 -14.61072 -14.15649 -13.74126 -13.17645 -12.89577 -12.60887 -12.26658 -12.13797 -11.85855 -11.59872 -10.95633 -10.74434 -10.61844 -9.07877 -8.57884 -8.03590 -6.30966 0.60593 0.99704 1.33075 1.43204 1.43965 1.55643 2.24873 2.66865 3.34883 3.48448 3.81011 4.32264 4.67561 4.92543 5.18998 5.29942 5.44834 5.65431 5.78761 6.17009 6.39750 6.61199 6.92053 7.08317 7.34756 8.41567 Molecular weight = 258.97amu Principal moments of inertia in cm(-1) A = 0.017044 B = 0.015411 C = 0.008440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.369943 B = 1816.440025 C = 3316.609565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C 0.040 3.960 3 Si 0.964 3.036 4 H -0.261 1.261 5 H -0.274 1.274 6 H -0.262 1.262 7 C -0.490 4.490 8 H 0.083 0.917 9 C 0.077 3.923 10 C 0.152 3.848 11 N -0.847 5.847 12 C -0.006 4.006 13 F -0.162 7.162 14 C -0.193 4.193 15 C -0.106 4.106 16 C -0.160 4.160 17 Br -0.073 7.073 18 H 0.285 0.715 19 H 0.399 0.601 20 H 0.387 0.613 21 H 0.139 0.861 22 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.669 -2.480 -0.624 3.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.173 4.173 3 Si 0.786 3.214 4 H -0.185 1.185 5 H -0.200 1.200 6 H -0.187 1.187 7 C -0.521 4.521 8 H 0.101 0.899 9 C 0.070 3.930 10 C 0.043 3.957 11 N -0.387 5.387 12 C -0.031 4.031 13 F -0.141 7.141 14 C -0.214 4.214 15 C -0.128 4.128 16 C -0.241 4.241 17 Br 0.011 6.989 18 H 0.096 0.904 19 H 0.232 0.768 20 H 0.214 0.786 21 H 0.157 0.843 22 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 2.881 -2.306 -1.113 3.855 hybrid contribution -0.356 1.017 0.622 1.244 sum 2.525 -1.288 -0.492 2.877 Atomic orbital electron populations 1.69900 1.08265 1.30356 1.36935 1.26375 0.95240 1.03129 0.92531 0.85410 0.79705 0.77500 0.78807 1.18518 1.19979 1.18685 1.19299 0.97757 0.90711 1.44355 0.89916 1.17129 0.92854 0.93333 0.89714 1.18135 0.98420 0.86679 0.92417 1.41971 1.54677 1.11900 1.30110 1.17256 1.00011 0.95803 0.90038 1.91291 1.71855 1.97144 1.53817 1.20503 1.05463 0.97420 0.97967 1.20447 0.98099 0.96594 0.97642 1.21834 1.07048 0.98297 0.96931 1.96282 1.65316 1.99194 1.38062 0.90419 0.76827 0.78615 0.84331 0.84780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -40.37 11.39 21.83 0.25 -40.12 14 2 C 0.04 1.88 3.51 85.24 0.30 2.18 14 3 Si 0.96 36.24 29.59 68.60 2.03 38.27 14 4 H -0.26 -9.84 7.11 99.48 0.71 -9.13 14 5 H -0.27 -10.29 7.11 99.48 0.71 -9.58 14 6 H -0.26 -9.32 7.11 99.48 0.71 -8.61 14 7 C -0.49 -24.23 7.65 23.36 0.18 -24.05 14 8 H 0.08 4.11 7.62 -2.91 -0.02 4.09 14 9 C 0.08 3.82 5.25 -21.16 -0.11 3.71 14 10 C 0.15 7.31 6.26 38.96 0.24 7.56 14 11 N -0.85 -37.18 8.04 -50.27 -0.40 -37.59 14 12 C -0.01 -0.25 7.30 22.44 0.16 -0.09 14 13 F -0.16 -6.92 16.62 44.97 0.75 -6.18 14 14 C -0.19 -7.93 10.01 22.44 0.22 -7.71 14 15 C -0.11 -4.38 9.75 22.25 0.22 -4.16 14 16 C -0.16 -7.33 6.27 22.75 0.14 -7.19 14 17 Br -0.07 -2.96 32.49 -20.37 -0.66 -3.62 14 18 H 0.29 12.86 8.31 -92.71 -0.77 12.09 14 19 H 0.40 17.69 5.64 -92.71 -0.52 17.17 14 20 H 0.39 15.17 8.30 -92.70 -0.77 14.40 14 21 H 0.14 4.81 8.06 -2.91 -0.02 4.79 14 22 H 0.13 4.72 8.06 -2.91 -0.02 4.70 14 Total: -1.00 -52.38 221.45 3.31 -49.08 By element: Atomic # 1 Polarization: 29.91 SS G_CDS: -0.01 Total: 29.90 kcal Atomic # 6 Polarization: -31.10 SS G_CDS: 1.36 Total: -29.75 kcal Atomic # 7 Polarization: -77.55 SS G_CDS: -0.16 Total: -77.71 kcal Atomic # 9 Polarization: -6.92 SS G_CDS: 0.75 Total: -6.18 kcal Atomic # 14 Polarization: 36.24 SS G_CDS: 2.03 Total: 38.27 kcal Atomic # 35 Polarization: -2.96 SS G_CDS: -0.66 Total: -3.62 kcal Total: -52.38 3.31 -49.08 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575714932.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.868 kcal (2) G-P(sol) polarization free energy of solvation -52.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds