Wall clock time and date at job start Mon Mar 30 2020 07:08:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 120.00116 * 2 1 4 4 H 1.48495 * 109.47389 * 270.00172 * 3 2 1 5 5 H 1.48507 * 109.46838 * 30.00118 * 3 2 1 6 6 H 1.48497 * 109.47047 * 149.99918 * 3 2 1 7 7 C 1.37871 * 119.99643 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00677 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99774 * 180.02562 * 7 2 1 10 10 N 1.46899 * 109.47375 * 179.97438 * 9 7 2 11 11 C 1.48152 * 111.00330 * 268.47553 * 10 9 7 12 12 C 1.52962 * 85.82901 * 223.07710 * 11 10 9 13 13 C 1.52810 * 121.28834 * 148.65816 * 12 11 10 14 14 C 1.53977 * 86.74383 * 101.21538 * 13 12 11 15 15 C 1.52801 * 121.28880 * 257.64292 * 12 11 10 16 16 C 1.48156 * 111.00239 * 168.83831 * 10 9 7 17 17 H 1.08995 * 113.81659 * 22.69183 * 16 10 9 18 18 C 1.50701 * 113.81821 * 251.14877 * 16 10 9 19 19 C 1.38652 * 120.78998 * 343.52461 * 18 16 10 20 20 C 1.38203 * 119.16257 * 179.79438 * 19 18 16 21 21 N 1.31870 * 120.76388 * 0.49156 * 20 19 18 22 22 C 1.31871 * 121.72637 * 359.73664 * 21 20 19 23 23 C 1.38200 * 120.76054 * 0.02562 * 22 21 20 24 24 H 0.97004 * 119.99775 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.47414 * 60.00220 * 9 7 2 26 26 H 1.09000 * 109.47304 * 299.99716 * 9 7 2 27 27 H 1.08999 * 113.82163 * 108.84843 * 11 10 9 28 28 H 1.09003 * 113.92188 * 337.31601 * 11 10 9 29 29 H 1.09001 * 113.67248 * 346.75288 * 13 12 11 30 30 H 1.08994 * 113.66917 * 215.67905 * 13 12 11 31 31 H 1.08998 * 113.57388 * 139.25973 * 14 13 12 32 32 H 1.08993 * 113.57653 * 270.04011 * 14 13 12 33 33 H 1.08998 * 113.66740 * 144.32329 * 15 12 11 34 34 H 1.08997 * 113.67126 * 13.24900 * 15 12 11 35 35 H 1.08006 * 120.41573 * 359.97438 * 19 18 16 36 36 H 1.08003 * 119.61958 * 180.20433 * 20 19 18 37 37 H 1.07993 * 119.61559 * 180.02562 * 22 21 20 38 38 H 1.08006 * 120.41636 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 7 4.0012 -2.5790 -0.0001 11 6 4.2124 -3.0677 1.3825 12 6 5.5154 -3.6680 0.8521 13 6 6.7475 -3.8052 1.7455 14 6 6.3687 -5.2906 1.8902 15 6 5.6341 -5.1599 0.5435 16 6 5.4577 -2.6273 -0.2673 17 1 5.9791 -1.6993 -0.0328 18 6 5.8093 -3.1753 -1.6264 19 6 4.8785 -3.8879 -2.3668 20 6 5.2356 -4.3716 -3.6112 21 7 6.4473 -4.1703 -4.0908 22 6 7.3593 -3.5013 -3.4128 23 6 7.0729 -2.9838 -2.1637 24 1 -0.4850 0.8401 0.0004 25 1 3.8745 -0.6809 0.8905 26 1 3.8752 -0.6797 -0.8895 27 1 3.4831 -3.8119 1.7026 28 1 4.3595 -2.2735 2.1144 29 1 6.6776 -3.2431 2.6767 30 1 7.6889 -3.6428 1.2207 31 1 7.2250 -5.9642 1.8562 32 1 5.7050 -5.4913 2.7312 33 1 6.2615 -5.3794 -0.3203 34 1 4.6758 -5.6785 0.5156 35 1 3.8860 -4.0603 -1.9772 36 1 4.5153 -4.9248 -4.1957 37 1 8.3411 -3.3562 -3.8384 38 1 7.8242 -2.4371 -1.6130 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596040389.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:19 Heat of formation + Delta-G solvation = 94.905005 kcal Electronic energy + Delta-G solvation = -19319.999910 eV Core-core repulsion = 16550.209291 eV Total energy + Delta-G solvation = -2769.790619 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.00141 -39.33592 -36.09254 -32.94451 -32.29070 -30.92284 -29.21868 -26.13290 -25.71308 -25.08270 -23.14758 -22.49925 -21.57674 -20.08712 -17.88562 -17.00160 -16.42347 -15.97491 -15.58904 -15.32926 -15.07974 -14.31807 -14.00755 -13.72287 -13.43798 -13.23824 -13.14123 -12.59123 -12.49379 -12.11251 -11.55776 -11.53393 -11.34052 -11.23211 -10.89385 -10.47585 -10.29549 -10.16686 -10.03552 -9.79075 -9.42018 -9.21789 -9.01770 -8.87338 -8.61059 -7.99717 -6.09389 -4.06925 1.38294 1.51871 3.23835 3.31255 3.31884 4.01099 4.29912 4.37383 4.49394 4.66724 4.72405 4.85860 4.90815 5.03517 5.11607 5.21554 5.33339 5.45095 5.53061 5.62590 5.72942 5.77789 5.80829 5.88447 5.93689 5.99016 6.06023 6.17484 6.19774 6.29531 6.37586 6.44146 6.52675 6.69660 6.74337 6.98627 7.26886 7.64952 7.76926 8.18482 8.57543 9.00585 9.51967 11.03867 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.017546 B = 0.007152 C = 0.005870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.404177 B = 3914.181981 C = 4768.756560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.069 3.931 3 Si 0.873 3.127 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.269 1.269 7 C -0.505 4.505 8 H 0.081 0.919 9 C 0.130 3.870 10 N -0.451 5.451 11 C 0.040 3.960 12 C -0.098 4.098 13 C -0.131 4.131 14 C -0.138 4.138 15 C -0.107 4.107 16 C 0.064 3.936 17 H 0.082 0.918 18 C -0.008 4.008 19 C -0.134 4.134 20 C 0.088 3.912 21 N -0.495 5.495 22 C 0.087 3.913 23 C -0.175 4.175 24 H 0.264 0.736 25 H 0.000 1.000 26 H 0.021 0.979 27 H 0.086 0.914 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.079 0.921 31 H 0.063 0.937 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.072 0.928 35 H 0.149 0.851 36 H 0.152 0.848 37 H 0.148 0.852 38 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.194 -8.275 0.818 17.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.133 4.133 3 Si 0.700 3.300 4 H -0.202 1.202 5 H -0.211 1.211 6 H -0.194 1.194 7 C -0.543 4.543 8 H 0.099 0.901 9 C 0.003 3.997 10 N -0.172 5.172 11 C -0.088 4.088 12 C -0.099 4.099 13 C -0.169 4.169 14 C -0.176 4.176 15 C -0.144 4.144 16 C -0.046 4.046 17 H 0.100 0.900 18 C -0.017 4.017 19 C -0.154 4.154 20 C -0.069 4.069 21 N -0.205 5.205 22 C -0.070 4.070 23 C -0.195 4.195 24 H 0.074 0.926 25 H 0.017 0.983 26 H 0.039 0.961 27 H 0.105 0.895 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.098 0.902 31 H 0.082 0.918 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.091 0.909 35 H 0.167 0.833 36 H 0.169 0.831 37 H 0.166 0.834 38 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 14.748 -8.791 -0.439 17.175 hybrid contribution 0.601 2.108 1.295 2.546 sum 15.349 -6.683 0.857 16.763 Atomic orbital electron populations 1.69891 1.06078 1.26827 1.50974 1.24904 0.94732 0.98765 0.94882 0.86902 0.80239 0.84242 0.78616 1.20173 1.21069 1.19410 1.20921 0.88389 0.94761 1.50262 0.90118 1.20711 0.98079 0.85475 0.95462 1.68424 1.09436 1.23210 1.16178 1.23509 0.93914 0.98940 0.92460 1.23006 0.96061 0.95317 0.95471 1.22794 0.97580 0.96901 0.99603 1.22818 1.00160 0.96435 0.98170 1.22520 1.00810 0.94032 0.97030 1.22199 0.94034 0.97525 0.90834 0.89991 1.19932 0.92849 0.94067 0.94810 1.22203 1.01562 0.96832 0.94777 1.22766 0.93048 0.97331 0.93713 1.67603 1.02425 1.14514 1.35912 1.22552 0.98402 0.94476 0.91584 1.21930 0.97397 1.02706 0.97470 0.92630 0.98273 0.96121 0.89528 0.91264 0.91359 0.90200 0.91825 0.90170 0.90303 0.90905 0.83295 0.83068 0.83423 0.85531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.46 13.96 55.43 0.77 -26.69 16 2 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 3 Si 0.87 21.43 27.47 -169.99 -4.67 16.76 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.27 -6.33 6.54 56.52 0.37 -5.96 16 7 C -0.51 -14.24 9.93 -34.44 -0.34 -14.58 16 8 H 0.08 2.49 8.06 -52.49 -0.42 2.07 16 9 C 0.13 3.08 3.64 -4.98 -0.02 3.06 16 10 N -0.45 -8.92 4.90 -238.30 -1.17 -10.09 16 11 C 0.04 0.69 7.73 -3.15 -0.02 0.67 16 12 C -0.10 -1.37 1.19 -154.89 -0.18 -1.56 16 13 C -0.13 -1.50 7.85 -26.32 -0.21 -1.71 16 14 C -0.14 -1.48 8.08 -25.73 -0.21 -1.69 16 15 C -0.11 -1.34 6.96 -26.33 -0.18 -1.53 16 16 C 0.06 1.04 3.45 -68.20 -0.24 0.80 16 17 H 0.08 1.33 7.92 -51.93 -0.41 0.92 16 18 C -0.01 -0.12 4.24 -104.32 -0.44 -0.57 16 19 C -0.13 -2.13 9.17 -39.44 -0.36 -2.49 16 20 C 0.09 1.29 11.18 -17.55 -0.20 1.09 16 21 N -0.50 -7.46 10.36 -13.25 -0.14 -7.60 16 22 C 0.09 1.15 11.18 -17.55 -0.20 0.95 16 23 C -0.17 -2.34 9.84 -39.44 -0.39 -2.73 16 24 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 25 H 0.00 -0.01 6.42 -51.93 -0.33 -0.34 16 26 H 0.02 0.51 7.49 -51.93 -0.39 0.12 16 27 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 28 H 0.07 1.19 7.47 -51.93 -0.39 0.80 16 29 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.08 1.01 7.42 -51.93 -0.39 0.63 16 34 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.15 2.55 7.41 -52.48 -0.39 2.17 16 36 H 0.15 1.87 8.06 -52.48 -0.42 1.44 16 37 H 0.15 1.50 8.06 -52.49 -0.42 1.08 16 38 H 0.13 1.40 8.06 -52.48 -0.42 0.98 16 LS Contribution 310.91 15.07 4.69 4.69 Total: -1.00 -30.85 310.91 -9.29 -40.14 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: -5.69 Total: 1.18 kcal Atomic # 6 Polarization: -15.30 SS G_CDS: -3.08 Total: -18.39 kcal Atomic # 7 Polarization: -43.85 SS G_CDS: -0.53 Total: -44.38 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.67 Total: 16.76 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -30.85 -9.29 -40.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596040389.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.047 kcal (2) G-P(sol) polarization free energy of solvation -30.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.142 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds