Wall clock time and date at job start Mon Mar 30 2020 07:08:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 120.00116 * 2 1 4 4 H 1.48495 * 109.47389 * 270.00172 * 3 2 1 5 5 H 1.48507 * 109.46838 * 30.00118 * 3 2 1 6 6 H 1.48497 * 109.47047 * 149.99918 * 3 2 1 7 7 C 1.37871 * 119.99643 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00677 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99774 * 180.02562 * 7 2 1 10 10 N 1.46899 * 109.47375 * 179.97438 * 9 7 2 11 11 C 1.48152 * 111.00330 * 268.47553 * 10 9 7 12 12 C 1.52962 * 85.82901 * 223.07710 * 11 10 9 13 13 C 1.52810 * 121.28834 * 148.65816 * 12 11 10 14 14 C 1.53977 * 86.74383 * 101.21538 * 13 12 11 15 15 C 1.52801 * 121.28880 * 257.64292 * 12 11 10 16 16 C 1.48156 * 111.00239 * 168.83831 * 10 9 7 17 17 H 1.08995 * 113.81659 * 22.69183 * 16 10 9 18 18 C 1.50701 * 113.81821 * 251.14877 * 16 10 9 19 19 C 1.38652 * 120.78998 * 343.52461 * 18 16 10 20 20 C 1.38203 * 119.16257 * 179.79438 * 19 18 16 21 21 N 1.31870 * 120.76388 * 0.49156 * 20 19 18 22 22 C 1.31871 * 121.72637 * 359.73664 * 21 20 19 23 23 C 1.38200 * 120.76054 * 0.02562 * 22 21 20 24 24 H 0.97004 * 119.99775 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.47414 * 60.00220 * 9 7 2 26 26 H 1.09000 * 109.47304 * 299.99716 * 9 7 2 27 27 H 1.08999 * 113.82163 * 108.84843 * 11 10 9 28 28 H 1.09003 * 113.92188 * 337.31601 * 11 10 9 29 29 H 1.09001 * 113.67248 * 346.75288 * 13 12 11 30 30 H 1.08994 * 113.66917 * 215.67905 * 13 12 11 31 31 H 1.08998 * 113.57388 * 139.25973 * 14 13 12 32 32 H 1.08993 * 113.57653 * 270.04011 * 14 13 12 33 33 H 1.08998 * 113.66740 * 144.32329 * 15 12 11 34 34 H 1.08997 * 113.67126 * 13.24900 * 15 12 11 35 35 H 1.08006 * 120.41573 * 359.97438 * 19 18 16 36 36 H 1.08003 * 119.61958 * 180.20433 * 20 19 18 37 37 H 1.07993 * 119.61559 * 180.02562 * 22 21 20 38 38 H 1.08006 * 120.41636 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 7 4.0012 -2.5790 -0.0001 11 6 4.2124 -3.0677 1.3825 12 6 5.5154 -3.6680 0.8521 13 6 6.7475 -3.8052 1.7455 14 6 6.3687 -5.2906 1.8902 15 6 5.6341 -5.1599 0.5435 16 6 5.4577 -2.6273 -0.2673 17 1 5.9791 -1.6993 -0.0328 18 6 5.8093 -3.1753 -1.6264 19 6 4.8785 -3.8879 -2.3668 20 6 5.2356 -4.3716 -3.6112 21 7 6.4473 -4.1703 -4.0908 22 6 7.3593 -3.5013 -3.4128 23 6 7.0729 -2.9838 -2.1637 24 1 -0.4850 0.8401 0.0004 25 1 3.8745 -0.6809 0.8905 26 1 3.8752 -0.6797 -0.8895 27 1 3.4831 -3.8119 1.7026 28 1 4.3595 -2.2735 2.1144 29 1 6.6776 -3.2431 2.6767 30 1 7.6889 -3.6428 1.2207 31 1 7.2250 -5.9642 1.8562 32 1 5.7050 -5.4913 2.7312 33 1 6.2615 -5.3794 -0.3203 34 1 4.6758 -5.6785 0.5156 35 1 3.8860 -4.0603 -1.9772 36 1 4.5153 -4.9248 -4.1957 37 1 8.3411 -3.3562 -3.8384 38 1 7.8242 -2.4371 -1.6130 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596040389.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:19 Heat of formation + Delta-G solvation = 75.256070 kcal Electronic energy + Delta-G solvation = -19320.851952 eV Core-core repulsion = 16550.209291 eV Total energy + Delta-G solvation = -2770.642661 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.21992 -40.45935 -37.34701 -34.88745 -33.68709 -32.01807 -31.02796 -27.40013 -26.84614 -26.57875 -24.26129 -23.70420 -23.08176 -21.47553 -19.06853 -18.98441 -17.67379 -17.20011 -16.90146 -16.45013 -16.33010 -15.92015 -15.46199 -15.00405 -14.79463 -14.60231 -14.42518 -14.36408 -13.77306 -13.21874 -13.06478 -12.87141 -12.68686 -12.50148 -12.37746 -12.05464 -11.93936 -11.59437 -11.36967 -11.17012 -11.04718 -10.82031 -10.36779 -10.19497 -9.98231 -9.52842 -8.32628 -6.36193 0.28995 0.37233 1.29699 1.30681 1.40931 2.29268 2.85415 3.00074 3.05149 3.34711 3.62074 3.66276 3.80314 3.86004 3.97118 4.06833 4.24970 4.34496 4.39582 4.44380 4.55271 4.61473 4.66646 4.77542 4.79900 4.86663 4.89094 4.98010 5.01996 5.11630 5.12763 5.20445 5.38712 5.43848 5.52797 5.54924 5.77648 5.88261 5.99812 6.53349 6.69948 7.09003 7.27190 8.84366 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.017546 B = 0.007152 C = 0.005870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.404177 B = 3914.181981 C = 4768.756560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.008 3.992 3 Si 0.945 3.055 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.248 1.248 7 C -0.513 4.513 8 H 0.033 0.967 9 C 0.144 3.856 10 N -0.477 5.477 11 C 0.033 3.967 12 C -0.089 4.089 13 C -0.120 4.120 14 C -0.127 4.127 15 C -0.107 4.107 16 C 0.066 3.934 17 H 0.088 0.912 18 C -0.021 4.021 19 C -0.152 4.152 20 C 0.083 3.917 21 N -0.511 5.511 22 C 0.089 3.911 23 C -0.168 4.168 24 H 0.267 0.733 25 H 0.004 0.996 26 H 0.016 0.984 27 H 0.076 0.924 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.098 0.902 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.058 0.942 35 H 0.124 0.876 36 H 0.166 0.834 37 H 0.184 0.816 38 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.913 -7.718 1.046 20.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.189 4.189 3 Si 0.769 3.231 4 H -0.195 1.195 5 H -0.204 1.204 6 H -0.172 1.172 7 C -0.552 4.552 8 H 0.052 0.948 9 C 0.016 3.984 10 N -0.198 5.198 11 C -0.095 4.095 12 C -0.090 4.090 13 C -0.158 4.158 14 C -0.165 4.165 15 C -0.144 4.144 16 C -0.043 4.043 17 H 0.106 0.894 18 C -0.030 4.030 19 C -0.172 4.172 20 C -0.072 4.072 21 N -0.221 5.221 22 C -0.068 4.068 23 C -0.188 4.188 24 H 0.076 0.924 25 H 0.022 0.978 26 H 0.034 0.966 27 H 0.095 0.905 28 H 0.087 0.913 29 H 0.094 0.906 30 H 0.116 0.884 31 H 0.102 0.898 32 H 0.101 0.899 33 H 0.099 0.901 34 H 0.077 0.923 35 H 0.142 0.858 36 H 0.183 0.817 37 H 0.201 0.799 38 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 18.481 -8.260 -0.206 20.245 hybrid contribution -0.607 1.827 1.186 2.261 sum 17.875 -6.433 0.980 19.022 Atomic orbital electron populations 1.70054 1.08122 1.28109 1.52522 1.25864 0.95609 1.03103 0.94369 0.85742 0.79526 0.78771 0.79092 1.19505 1.20414 1.17163 1.21171 0.91054 0.93088 1.49848 0.94823 1.20425 0.94866 0.88060 0.95078 1.68343 1.12636 1.20633 1.18221 1.23535 0.95805 0.98965 0.91235 1.22894 0.95788 0.95494 0.94804 1.22812 0.96563 0.97206 0.99194 1.22786 1.00487 0.96516 0.96677 1.22529 1.00577 0.92812 0.98521 1.22270 0.91234 0.98539 0.92272 0.89401 1.20007 0.93926 0.94486 0.94566 1.22059 1.00900 0.98472 0.95793 1.22947 0.93594 0.97317 0.93375 1.67679 1.02630 1.15308 1.36484 1.23166 0.99287 0.92947 0.91359 1.22199 0.96853 1.02149 0.97550 0.92404 0.97832 0.96603 0.90538 0.91272 0.90647 0.88385 0.89779 0.89930 0.90145 0.92319 0.85788 0.81729 0.79938 0.82514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.91 13.96 21.45 0.30 -59.61 16 2 C 0.01 0.46 5.47 84.65 0.46 0.93 16 3 Si 0.95 44.29 27.47 68.60 1.88 46.17 16 4 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 5 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 6 H -0.25 -10.68 6.54 99.48 0.65 -10.03 16 7 C -0.51 -30.14 9.93 25.60 0.25 -29.89 16 8 H 0.03 2.22 8.06 -2.91 -0.02 2.20 16 9 C 0.14 6.86 3.64 85.56 0.31 7.17 16 10 N -0.48 -19.25 4.90 -907.85 -4.45 -23.70 16 11 C 0.03 1.14 7.73 86.05 0.67 1.81 16 12 C -0.09 -2.37 1.19 -52.30 -0.06 -2.43 16 13 C -0.12 -2.35 7.85 30.86 0.24 -2.10 16 14 C -0.13 -2.36 8.08 31.24 0.25 -2.10 16 15 C -0.11 -2.56 6.96 30.86 0.21 -2.34 16 16 C 0.07 2.07 3.45 43.91 0.15 2.22 16 17 H 0.09 2.65 7.92 -2.39 -0.02 2.63 16 18 C -0.02 -0.63 4.24 -19.67 -0.08 -0.71 16 19 C -0.15 -4.88 9.17 22.36 0.21 -4.68 16 20 C 0.08 2.42 11.18 84.68 0.95 3.36 16 21 N -0.51 -14.45 10.36 -195.85 -2.03 -16.48 16 22 C 0.09 2.07 11.18 84.68 0.95 3.02 16 23 C -0.17 -3.94 9.84 22.36 0.22 -3.72 16 24 H 0.27 15.71 8.31 -92.71 -0.77 14.93 16 25 H 0.00 0.18 6.42 -2.39 -0.02 0.17 16 26 H 0.02 0.77 7.49 -2.39 -0.02 0.75 16 27 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 28 H 0.07 2.35 7.47 -2.39 -0.02 2.34 16 29 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.08 1.92 7.42 -2.39 -0.02 1.91 16 34 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.12 4.55 7.41 -2.91 -0.02 4.52 16 36 H 0.17 4.09 8.06 -2.91 -0.02 4.06 16 37 H 0.18 2.87 8.06 -2.91 -0.02 2.85 16 38 H 0.16 2.71 8.06 -2.91 -0.02 2.68 16 Total: -1.00 -69.15 310.91 1.41 -67.74 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: 0.97 Total: 15.34 kcal Atomic # 6 Polarization: -34.20 SS G_CDS: 4.73 Total: -29.47 kcal Atomic # 7 Polarization: -93.61 SS G_CDS: -6.18 Total: -99.79 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 1.88 Total: 46.17 kcal Total: -69.15 1.41 -67.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596040389.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.996 kcal (2) G-P(sol) polarization free energy of solvation -69.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds