Wall clock time and date at job start Mon Mar 30 2020 06:56:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42895 * 113.99682 * 2 1 4 4 H 1.09001 * 109.47626 * 30.00074 * 3 2 1 5 5 C 1.53006 * 109.47036 * 149.99938 * 3 2 1 6 6 S 1.81399 * 109.47007 * 299.99430 * 5 3 2 7 7 C 1.81393 * 103.00238 * 179.97438 * 6 5 3 8 8 C 1.53004 * 109.47276 * 180.02562 * 7 6 5 9 9 C 1.52997 * 109.46832 * 180.02562 * 8 7 6 10 10 C 1.50701 * 109.47075 * 179.97438 * 9 8 7 11 11 H 1.08007 * 119.99886 * 359.97438 * 10 9 8 12 12 C 1.37878 * 120.00247 * 180.02562 * 10 9 8 13 13 N 1.31515 * 119.99654 * 180.02562 * 12 10 9 14 14 Si 1.86792 * 119.99972 * 359.97438 * 12 10 9 15 15 H 1.48503 * 109.47324 * 90.00228 * 14 12 10 16 16 H 1.48498 * 109.47221 * 210.00397 * 14 12 10 17 17 H 1.48501 * 109.47150 * 330.00244 * 14 12 10 18 18 C 1.52999 * 109.47283 * 269.99373 * 3 2 1 19 19 C 1.53780 * 113.61698 * 157.49682 * 18 3 2 20 20 C 1.53780 * 87.08406 * 220.02105 * 19 18 3 21 21 C 1.53784 * 87.08018 * 25.43435 * 20 19 18 22 22 H 1.08993 * 109.47333 * 300.00404 * 1 2 3 23 23 H 1.08999 * 109.46675 * 60.00707 * 1 2 3 24 24 H 1.09001 * 109.47200 * 180.02562 * 1 2 3 25 25 H 1.08993 * 109.46955 * 59.99914 * 5 3 2 26 26 H 1.09000 * 109.47050 * 179.97438 * 5 3 2 27 27 H 1.08997 * 109.47504 * 300.00249 * 7 6 5 28 28 H 1.09001 * 109.46984 * 59.99943 * 7 6 5 29 29 H 1.09002 * 109.46867 * 299.99603 * 8 7 6 30 30 H 1.08997 * 109.47094 * 60.00064 * 8 7 6 31 31 H 1.08997 * 109.47577 * 299.99607 * 9 8 7 32 32 H 1.09005 * 109.47229 * 60.00329 * 9 8 7 33 33 H 0.97000 * 119.99607 * 179.97438 * 13 12 10 34 34 H 1.09005 * 112.85234 * 288.81074 * 18 3 2 35 35 H 1.08995 * 113.61521 * 334.57156 * 19 18 3 36 36 H 1.08999 * 113.61249 * 105.47321 * 19 18 3 37 37 H 1.09003 * 113.61586 * 270.88777 * 20 19 18 38 38 H 1.09003 * 113.68815 * 139.99042 * 20 19 18 39 39 H 1.09006 * 113.61270 * 220.01820 * 21 20 19 40 40 H 1.09000 * 113.61506 * 89.11513 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3449 1.9994 0.5138 5 6 3.3589 1.2633 0.7213 6 16 3.1129 0.7111 2.4316 7 6 4.7948 0.7246 3.1107 8 6 4.7582 0.2746 4.5727 9 6 6.1768 0.2867 5.1456 10 6 6.1407 -0.1559 6.5857 11 1 5.1999 -0.4191 7.0463 12 6 7.3085 -0.2238 7.3155 13 7 7.2770 -0.6106 8.5721 14 14 8.9355 0.2320 6.5191 15 1 9.1919 1.6820 6.7116 16 1 10.0302 -0.5517 7.1457 17 1 8.8779 -0.0719 5.0666 18 6 2.2177 1.7713 -1.4425 19 6 2.3077 3.2994 -1.5894 20 6 1.4687 3.1471 -2.8691 21 6 0.9163 1.8484 -2.2582 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5137 -0.8901 24 1 -0.3634 -1.0277 0.0005 25 1 4.0241 0.5694 0.2075 26 1 3.8024 2.2590 0.7209 27 1 5.4239 0.0440 2.5371 28 1 5.2027 1.7337 3.0509 29 1 4.1292 0.9551 5.1466 30 1 4.3506 -0.7345 4.6321 31 1 6.8063 -0.3934 4.5718 32 1 6.5841 1.2961 5.0862 33 1 8.0986 -0.6588 9.0855 34 1 3.0196 1.2346 -1.9495 35 1 1.7979 3.8452 -0.7955 36 1 3.3195 3.6617 -1.7713 37 1 2.0663 2.9876 -3.7667 38 1 0.7159 3.9253 -2.9945 39 1 0.8048 1.0392 -2.9800 40 1 0.0261 1.9974 -1.6471 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596417618.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:11 Heat of formation + Delta-G solvation = -47.451524 kcal Electronic energy + Delta-G solvation = -16803.950589 eV Core-core repulsion = 14131.138128 eV Total energy + Delta-G solvation = -2672.812461 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 258.139 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.92034 -37.09284 -34.54622 -32.05795 -31.96554 -28.03712 -26.68871 -26.22746 -25.76850 -23.23265 -21.74778 -20.10685 -19.87925 -17.01134 -16.79893 -16.44190 -15.86550 -15.49979 -14.92580 -14.73054 -14.25823 -14.02290 -13.39459 -13.22792 -13.10149 -12.74644 -12.47055 -12.31252 -12.11252 -11.98135 -11.78617 -11.55374 -11.13863 -11.01127 -10.84725 -10.67181 -10.56774 -10.01767 -9.82870 -9.71567 -9.53755 -9.39616 -9.19265 -8.53340 -7.36436 -6.03370 -4.01580 1.86787 2.89592 3.30806 3.38198 3.41503 3.53461 4.18080 4.33491 4.36662 4.45537 4.50147 4.80262 4.94827 5.06765 5.15844 5.25499 5.27882 5.29924 5.37424 5.41246 5.44455 5.45671 5.54730 5.55108 5.57371 5.62946 5.70547 5.86869 6.03954 6.10365 6.45006 6.54380 6.85036 7.05084 7.27803 7.39972 7.78551 8.54789 9.01881 9.58563 11.10162 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.041120 B = 0.003286 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.777359 B = 8519.588510 C = 9009.728258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.369 6.369 3 C 0.118 3.882 4 H 0.069 0.931 5 C -0.089 4.089 6 S -0.259 6.259 7 C -0.080 4.080 8 C -0.087 4.087 9 C -0.008 4.008 10 C -0.520 4.520 11 H 0.073 0.927 12 C 0.066 3.934 13 N -0.903 5.903 14 Si 0.880 3.120 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.266 1.266 18 C -0.128 4.128 19 C -0.136 4.136 20 C -0.142 4.142 21 C -0.137 4.137 22 H 0.041 0.959 23 H 0.046 0.954 24 H 0.084 0.916 25 H 0.084 0.916 26 H 0.089 0.911 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.017 0.983 32 H 0.012 0.988 33 H 0.263 0.737 34 H 0.097 0.903 35 H 0.083 0.917 36 H 0.069 0.931 37 H 0.080 0.920 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.350 7.054 -23.810 27.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.287 6.287 3 C 0.059 3.941 4 H 0.087 0.913 5 C -0.237 4.237 6 S -0.031 6.031 7 C -0.229 4.229 8 C -0.125 4.125 9 C -0.047 4.047 10 C -0.558 4.558 11 H 0.091 0.909 12 C -0.135 4.135 13 N -0.542 5.542 14 Si 0.708 3.292 15 H -0.203 1.203 16 H -0.214 1.214 17 H -0.190 1.190 18 C -0.148 4.148 19 C -0.173 4.173 20 C -0.180 4.180 21 C -0.174 4.174 22 H 0.060 0.940 23 H 0.064 0.936 24 H 0.102 0.898 25 H 0.103 0.897 26 H 0.108 0.892 27 H 0.094 0.906 28 H 0.092 0.908 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.035 0.965 32 H 0.030 0.970 33 H 0.073 0.927 34 H 0.115 0.885 35 H 0.101 0.899 36 H 0.088 0.912 37 H 0.098 0.902 38 H 0.086 0.914 39 H 0.088 0.912 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -13.076 6.570 -23.150 27.388 hybrid contribution 1.953 0.757 -0.881 2.272 sum -11.123 7.327 -24.031 27.476 Atomic orbital electron populations 1.22962 0.81396 1.02862 1.00036 1.87986 1.19355 1.26546 1.94830 1.21776 0.93216 0.85665 0.93477 0.91343 1.23472 0.99960 1.04169 0.96114 1.86970 1.16618 1.89866 1.09613 1.23631 0.93458 1.04029 1.01740 1.21261 1.00472 1.01301 0.89509 1.19574 0.91747 0.96397 0.96965 1.21124 0.95564 1.44959 0.94176 0.90902 1.25030 0.99095 0.94702 0.94690 1.69918 1.28016 1.48035 1.08252 0.86767 0.83645 0.78670 0.80132 1.20296 1.21351 1.19050 1.23101 0.99317 0.96691 0.95686 1.22945 1.00816 0.95347 0.98236 1.22822 0.99656 0.97979 0.97500 1.22991 0.97108 0.98079 0.99216 0.94030 0.93602 0.89751 0.89729 0.89233 0.90633 0.90782 0.91884 0.91744 0.96494 0.96973 0.92723 0.88502 0.89873 0.91173 0.90158 0.91406 0.91213 0.89915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 10.57 101.05 1.07 1.29 16 2 O -0.37 -4.49 9.89 -35.23 -0.35 -4.84 16 3 C 0.12 1.24 2.08 -26.73 -0.06 1.18 16 4 H 0.07 0.71 7.59 -51.93 -0.39 0.32 16 5 C -0.09 -1.06 5.66 37.16 0.21 -0.85 16 6 S -0.26 -4.07 21.38 -107.50 -2.30 -6.37 16 7 C -0.08 -1.36 5.94 37.16 0.22 -1.14 16 8 C -0.09 -1.79 5.16 -26.73 -0.14 -1.92 16 9 C -0.01 -0.18 4.04 -27.88 -0.11 -0.30 16 10 C -0.52 -15.12 9.66 -34.44 -0.33 -15.46 16 11 H 0.07 2.28 7.99 -52.48 -0.42 1.86 16 12 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 13 N -0.90 -28.24 13.96 55.43 0.77 -27.47 16 14 Si 0.88 21.90 27.47 -169.99 -4.67 17.23 16 15 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 16 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 17 H -0.27 -6.33 6.54 56.52 0.37 -5.96 16 18 C -0.13 -1.07 3.36 -89.81 -0.30 -1.37 16 19 C -0.14 -0.97 7.63 -25.92 -0.20 -1.17 16 20 C -0.14 -0.91 8.08 -25.92 -0.21 -1.12 16 21 C -0.14 -0.98 6.18 -25.91 -0.16 -1.14 16 22 H 0.04 0.38 8.08 -51.93 -0.42 -0.04 16 23 H 0.05 0.34 4.95 -51.93 -0.26 0.08 16 24 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 26 H 0.09 0.95 8.14 -51.92 -0.42 0.52 16 27 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 28 H 0.07 1.17 8.14 -51.92 -0.42 0.75 16 29 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 30 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 31 H 0.02 0.41 7.20 -51.93 -0.37 0.03 16 32 H 0.01 0.28 7.57 -51.93 -0.39 -0.11 16 33 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 34 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.08 0.59 7.96 -51.93 -0.41 0.17 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.08 0.57 6.33 -51.93 -0.33 0.24 16 LS Contribution 330.96 15.07 4.99 4.99 Total: -1.00 -31.42 330.96 -8.90 -40.32 By element: Atomic # 1 Polarization: 3.51 SS G_CDS: -7.24 Total: -3.73 kcal Atomic # 6 Polarization: -20.03 SS G_CDS: -0.11 Total: -20.13 kcal Atomic # 7 Polarization: -28.24 SS G_CDS: 0.77 Total: -27.47 kcal Atomic # 8 Polarization: -4.49 SS G_CDS: -0.35 Total: -4.84 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.67 Total: 17.23 kcal Atomic # 16 Polarization: -4.07 SS G_CDS: -2.30 Total: -6.37 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.42 -8.90 -40.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596417618.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.127 kcal (2) G-P(sol) polarization free energy of solvation -31.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds