Wall clock time and date at job start Mon Mar 30 2020 06:56:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42895 * 113.99682 * 2 1 4 4 H 1.09001 * 109.47626 * 30.00074 * 3 2 1 5 5 C 1.53006 * 109.47036 * 149.99938 * 3 2 1 6 6 S 1.81399 * 109.47007 * 299.99430 * 5 3 2 7 7 C 1.81393 * 103.00238 * 179.97438 * 6 5 3 8 8 C 1.53004 * 109.47276 * 180.02562 * 7 6 5 9 9 C 1.52997 * 109.46832 * 180.02562 * 8 7 6 10 10 C 1.50701 * 109.47075 * 179.97438 * 9 8 7 11 11 H 1.08007 * 119.99886 * 359.97438 * 10 9 8 12 12 C 1.37878 * 120.00247 * 180.02562 * 10 9 8 13 13 N 1.31515 * 119.99654 * 180.02562 * 12 10 9 14 14 Si 1.86792 * 119.99972 * 359.97438 * 12 10 9 15 15 H 1.48503 * 109.47324 * 90.00228 * 14 12 10 16 16 H 1.48498 * 109.47221 * 210.00397 * 14 12 10 17 17 H 1.48501 * 109.47150 * 330.00244 * 14 12 10 18 18 C 1.52999 * 109.47283 * 269.99373 * 3 2 1 19 19 C 1.53780 * 113.61698 * 157.49682 * 18 3 2 20 20 C 1.53780 * 87.08406 * 220.02105 * 19 18 3 21 21 C 1.53784 * 87.08018 * 25.43435 * 20 19 18 22 22 H 1.08993 * 109.47333 * 300.00404 * 1 2 3 23 23 H 1.08999 * 109.46675 * 60.00707 * 1 2 3 24 24 H 1.09001 * 109.47200 * 180.02562 * 1 2 3 25 25 H 1.08993 * 109.46955 * 59.99914 * 5 3 2 26 26 H 1.09000 * 109.47050 * 179.97438 * 5 3 2 27 27 H 1.08997 * 109.47504 * 300.00249 * 7 6 5 28 28 H 1.09001 * 109.46984 * 59.99943 * 7 6 5 29 29 H 1.09002 * 109.46867 * 299.99603 * 8 7 6 30 30 H 1.08997 * 109.47094 * 60.00064 * 8 7 6 31 31 H 1.08997 * 109.47577 * 299.99607 * 9 8 7 32 32 H 1.09005 * 109.47229 * 60.00329 * 9 8 7 33 33 H 0.97000 * 119.99607 * 179.97438 * 13 12 10 34 34 H 1.09005 * 112.85234 * 288.81074 * 18 3 2 35 35 H 1.08995 * 113.61521 * 334.57156 * 19 18 3 36 36 H 1.08999 * 113.61249 * 105.47321 * 19 18 3 37 37 H 1.09003 * 113.61586 * 270.88777 * 20 19 18 38 38 H 1.09003 * 113.68815 * 139.99042 * 20 19 18 39 39 H 1.09006 * 113.61270 * 220.01820 * 21 20 19 40 40 H 1.09000 * 113.61506 * 89.11513 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3449 1.9994 0.5138 5 6 3.3589 1.2633 0.7213 6 16 3.1129 0.7111 2.4316 7 6 4.7948 0.7246 3.1107 8 6 4.7582 0.2746 4.5727 9 6 6.1768 0.2867 5.1456 10 6 6.1407 -0.1559 6.5857 11 1 5.1999 -0.4191 7.0463 12 6 7.3085 -0.2238 7.3155 13 7 7.2770 -0.6106 8.5721 14 14 8.9355 0.2320 6.5191 15 1 9.1919 1.6820 6.7116 16 1 10.0302 -0.5517 7.1457 17 1 8.8779 -0.0719 5.0666 18 6 2.2177 1.7713 -1.4425 19 6 2.3077 3.2994 -1.5894 20 6 1.4687 3.1471 -2.8691 21 6 0.9163 1.8484 -2.2582 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5137 -0.8901 24 1 -0.3634 -1.0277 0.0005 25 1 4.0241 0.5694 0.2075 26 1 3.8024 2.2590 0.7209 27 1 5.4239 0.0440 2.5371 28 1 5.2027 1.7337 3.0509 29 1 4.1292 0.9551 5.1466 30 1 4.3506 -0.7345 4.6321 31 1 6.8063 -0.3934 4.5718 32 1 6.5841 1.2961 5.0862 33 1 8.0986 -0.6588 9.0855 34 1 3.0196 1.2346 -1.9495 35 1 1.7979 3.8452 -0.7955 36 1 3.3195 3.6617 -1.7713 37 1 2.0663 2.9876 -3.7667 38 1 0.7159 3.9253 -2.9945 39 1 0.8048 1.0392 -2.9800 40 1 0.0261 1.9974 -1.6471 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596417618.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:05 Heat of formation + Delta-G solvation = -65.012933 kcal Electronic energy + Delta-G solvation = -16804.712109 eV Core-core repulsion = 14131.138128 eV Total energy + Delta-G solvation = -2673.573981 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 258.139 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -40.58518 -37.81586 -36.40110 -34.16291 -32.80425 -29.91928 -27.43306 -26.94054 -26.35675 -25.03991 -22.66031 -21.84446 -20.45074 -18.96311 -17.79253 -17.33622 -16.91006 -16.33500 -16.30668 -16.07078 -15.78457 -15.00982 -14.73040 -14.34046 -14.20715 -14.00906 -13.61839 -13.55709 -13.19963 -13.01198 -12.86993 -12.68438 -12.50995 -12.28326 -11.83446 -11.73537 -11.58610 -11.49714 -11.37734 -11.25954 -11.07280 -10.85026 -10.77449 -10.23745 -8.60096 -8.30176 -6.35482 0.69880 1.36213 1.38886 1.50862 1.71301 2.36275 2.77760 3.04898 3.51652 3.74864 3.79327 3.94799 4.02214 4.03129 4.04413 4.18010 4.37449 4.47589 4.49067 4.55016 4.56865 4.73153 4.75425 4.81070 4.83404 4.85687 4.92934 4.96664 4.99155 5.08544 5.10586 5.30756 5.42945 5.51482 5.56168 5.63377 6.26482 6.27851 6.72211 7.28991 8.87018 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.041120 B = 0.003286 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.777359 B = 8519.588510 C = 9009.728258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.395 6.395 3 C 0.118 3.882 4 H 0.068 0.932 5 C -0.075 4.075 6 S -0.296 6.296 7 C -0.070 4.070 8 C -0.078 4.078 9 C -0.004 4.004 10 C -0.537 4.537 11 H 0.027 0.973 12 C 0.001 3.999 13 N -0.953 5.953 14 Si 0.957 3.043 15 H -0.264 1.264 16 H -0.284 1.284 17 H -0.243 1.243 18 C -0.127 4.127 19 C -0.134 4.134 20 C -0.137 4.137 21 C -0.136 4.136 22 H 0.037 0.963 23 H 0.065 0.935 24 H 0.089 0.911 25 H 0.086 0.914 26 H 0.108 0.892 27 H 0.084 0.916 28 H 0.090 0.910 29 H 0.051 0.949 30 H 0.048 0.952 31 H 0.025 0.975 32 H 0.026 0.974 33 H 0.267 0.733 34 H 0.094 0.906 35 H 0.084 0.916 36 H 0.074 0.926 37 H 0.085 0.915 38 H 0.075 0.925 39 H 0.070 0.930 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.544 8.442 -26.707 30.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.314 6.314 3 C 0.059 3.941 4 H 0.086 0.914 5 C -0.223 4.223 6 S -0.068 6.068 7 C -0.218 4.218 8 C -0.117 4.117 9 C -0.043 4.043 10 C -0.576 4.576 11 H 0.046 0.954 12 C -0.195 4.195 13 N -0.594 5.594 14 Si 0.779 3.221 15 H -0.189 1.189 16 H -0.210 1.210 17 H -0.167 1.167 18 C -0.148 4.148 19 C -0.172 4.172 20 C -0.174 4.174 21 C -0.174 4.174 22 H 0.056 0.944 23 H 0.083 0.917 24 H 0.108 0.892 25 H 0.104 0.896 26 H 0.126 0.874 27 H 0.103 0.897 28 H 0.108 0.892 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.043 0.957 32 H 0.044 0.956 33 H 0.076 0.924 34 H 0.113 0.887 35 H 0.102 0.898 36 H 0.093 0.907 37 H 0.104 0.896 38 H 0.094 0.906 39 H 0.089 0.911 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -12.289 7.960 -26.057 29.889 hybrid contribution 1.565 0.290 0.047 1.592 sum -10.724 8.250 -26.009 29.318 Atomic orbital electron populations 1.23089 0.80170 1.03539 1.00781 1.87942 1.20838 1.27582 1.95050 1.21857 0.92318 0.85209 0.94677 0.91373 1.23598 1.01148 1.04922 0.92666 1.87119 1.15936 1.90479 1.13296 1.23377 0.94502 1.04953 0.98990 1.21033 0.98111 1.00385 0.92192 1.19499 0.94104 0.96796 0.93906 1.21487 0.94070 1.45083 0.96917 0.95412 1.26096 1.03812 0.94442 0.95175 1.70083 1.29489 1.49559 1.10222 0.85567 0.77583 0.78893 0.80050 1.18871 1.20970 1.16671 1.23078 1.00055 0.97515 0.94107 1.22963 1.01340 0.94216 0.98673 1.22810 0.99657 0.97625 0.97323 1.23005 0.96631 0.98639 0.99079 0.94417 0.91684 0.89232 0.89572 0.87387 0.89735 0.89174 0.93009 0.93296 0.95716 0.95618 0.92414 0.88732 0.89760 0.90682 0.89593 0.90600 0.91144 0.89627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 10.57 113.37 1.20 1.55 16 2 O -0.39 -9.16 9.89 -148.98 -1.47 -10.63 16 3 C 0.12 2.29 2.08 30.60 0.06 2.35 16 4 H 0.07 1.31 7.59 -2.39 -0.02 1.29 16 5 C -0.08 -1.64 5.66 71.98 0.41 -1.24 16 6 S -0.30 -9.02 21.38 -56.49 -1.21 -10.23 16 7 C -0.07 -2.26 5.94 71.98 0.43 -1.83 16 8 C -0.08 -3.24 5.16 30.59 0.16 -3.08 16 9 C 0.00 -0.19 4.04 29.85 0.12 -0.07 16 10 C -0.54 -32.00 9.66 25.60 0.25 -31.75 16 11 H 0.03 1.83 7.99 -2.91 -0.02 1.81 16 12 C 0.00 0.08 5.47 84.65 0.46 0.54 16 13 N -0.95 -61.06 13.96 21.45 0.30 -60.76 16 14 Si 0.96 44.45 27.47 68.60 1.88 46.33 16 15 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 16 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 17 H -0.24 -10.36 6.54 99.48 0.65 -9.71 16 18 C -0.13 -1.84 3.36 -10.27 -0.03 -1.88 16 19 C -0.13 -1.57 7.63 31.12 0.24 -1.33 16 20 C -0.14 -1.38 8.08 31.12 0.25 -1.13 16 21 C -0.14 -1.63 6.18 31.12 0.19 -1.44 16 22 H 0.04 0.66 8.08 -2.39 -0.02 0.65 16 23 H 0.06 0.85 4.95 -2.39 -0.01 0.83 16 24 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 25 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 26 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 27 H 0.08 2.56 8.14 -2.39 -0.02 2.55 16 28 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 29 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 30 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 31 H 0.02 1.13 7.20 -2.39 -0.02 1.12 16 32 H 0.03 1.15 7.57 -2.38 -0.02 1.13 16 33 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 34 H 0.09 1.43 8.14 -2.38 -0.02 1.41 16 35 H 0.08 0.98 7.96 -2.39 -0.02 0.96 16 36 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 39 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 40 H 0.09 0.97 6.33 -2.39 -0.02 0.96 16 Total: -1.00 -68.76 330.96 4.15 -64.61 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: 0.92 Total: 10.00 kcal Atomic # 6 Polarization: -43.04 SS G_CDS: 3.73 Total: -39.31 kcal Atomic # 7 Polarization: -61.06 SS G_CDS: 0.30 Total: -60.76 kcal Atomic # 8 Polarization: -9.16 SS G_CDS: -1.47 Total: -10.63 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 1.88 Total: 46.33 kcal Atomic # 16 Polarization: -9.02 SS G_CDS: -1.21 Total: -10.23 kcal Total: -68.76 4.15 -64.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596417618.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.407 kcal (2) G-P(sol) polarization free energy of solvation -68.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds