Wall clock time and date at job start Mon Mar 30 2020 07:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37972 * 120.07636 * 2 1 4 4 C 1.38341 * 120.14953 * 179.72750 * 3 2 1 5 5 C 1.38382 * 120.30601 * 0.50864 * 4 3 2 6 6 C 1.50705 * 119.92441 * 179.76789 * 5 4 3 7 7 N 1.46898 * 109.46881 * 269.72300 * 6 5 4 8 8 C 1.46896 * 111.00178 * 66.04709 * 7 6 5 9 9 C 1.46903 * 110.99849 * 190.00038 * 7 6 5 10 10 H 1.09003 * 109.46808 * 300.00462 * 9 7 6 11 11 C 1.53000 * 109.47120 * 60.00056 * 9 7 6 12 12 C 1.50694 * 109.47066 * 180.02562 * 9 7 6 13 13 H 1.08000 * 120.00563 * 359.97438 * 12 9 7 14 14 C 1.37885 * 119.99902 * 180.02562 * 12 9 7 15 15 N 1.31516 * 119.99913 * 359.97438 * 14 12 9 16 16 Si 1.86798 * 119.99766 * 179.97438 * 14 12 9 17 17 H 1.48500 * 109.47353 * 269.99586 * 16 14 12 18 18 H 1.48501 * 109.47293 * 30.00037 * 16 14 12 19 19 H 1.48504 * 109.46680 * 149.99835 * 16 14 12 20 20 C 1.37926 * 120.15108 * 359.49068 * 5 4 3 21 21 C 1.39617 * 120.07974 * 179.97438 * 2 1 3 22 22 C 1.43202 * 120.14580 * 0.02562 * 21 2 1 23 23 N 3.48493 * 80.49605 * 179.97438 * 2 1 3 24 24 H 1.09004 * 109.47056 * 270.02182 * 1 2 3 25 25 H 1.09004 * 109.46945 * 30.02138 * 1 2 3 26 26 H 1.08997 * 109.46976 * 150.02501 * 1 2 3 27 27 H 1.07999 * 119.92833 * 359.97431 * 3 2 1 28 28 H 1.07998 * 119.84826 * 180.27575 * 4 3 2 29 29 H 1.09005 * 109.46912 * 149.72520 * 6 5 4 30 30 H 1.08999 * 109.47231 * 29.72218 * 6 5 4 31 31 H 1.09000 * 109.47187 * 183.95237 * 8 7 6 32 32 H 1.08996 * 109.47272 * 303.95406 * 8 7 6 33 33 H 1.09005 * 109.47145 * 63.94894 * 8 7 6 34 34 H 1.08997 * 109.47359 * 180.02562 * 11 9 7 35 35 H 1.09007 * 109.47356 * 300.00024 * 11 9 7 36 36 H 1.09000 * 109.47156 * 59.99749 * 11 9 7 37 37 H 0.97001 * 119.99646 * 179.97438 * 15 14 12 38 38 H 1.08004 * 120.07562 * 180.23495 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1940 0.0000 4 6 3.5818 1.1957 0.0057 5 6 4.2817 0.0019 0.0008 6 6 5.7887 0.0139 0.0018 7 7 6.2792 0.0173 -1.3829 8 6 5.9202 1.2675 -2.0655 9 6 7.7299 -0.2093 -1.4280 10 1 8.2384 0.5805 -0.8751 11 6 8.0543 -1.5644 -0.7959 12 6 8.1956 -0.1986 -2.8612 13 1 7.4850 -0.0398 -3.6588 14 6 9.5289 -0.3926 -3.1542 15 7 10.3942 -0.5866 -2.1830 16 14 10.1061 -0.3800 -4.9308 17 1 10.0405 -1.7572 -5.4824 18 1 9.2309 0.5153 -5.7293 19 1 11.5059 0.1119 -4.9929 20 6 3.6032 -1.1989 0.0008 21 6 2.2067 -1.2081 0.0005 22 6 1.4956 -2.4511 0.0005 23 7 0.9316 -3.4371 0.0015 24 1 -0.3633 0.0004 1.0277 25 1 -0.3633 0.8898 -0.5142 26 1 -0.3633 -0.8902 -0.5134 27 1 1.6585 2.1293 -0.0004 28 1 4.1181 2.1331 0.0102 29 1 6.1587 -0.8730 0.5162 30 1 6.1446 0.9070 0.5155 31 1 6.2335 1.2150 -3.1082 32 1 4.8408 1.4108 -2.0173 33 1 6.4200 2.1044 -1.5776 34 1 9.1308 -1.7324 -0.8290 35 1 7.7175 -1.5718 0.2408 36 1 7.5458 -2.3543 -1.3488 37 1 11.3321 -0.7234 -2.3892 38 1 4.1506 -2.1299 0.0008 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599310869.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:10:33 Heat of formation + Delta-G solvation = 54.436061 kcal Electronic energy + Delta-G solvation = -18543.806619 eV Core-core repulsion = 15772.261134 eV Total energy + Delta-G solvation = -2771.545484 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -39.84096 -37.22418 -36.23555 -33.61863 -32.28322 -31.32934 -29.26741 -28.47278 -25.90112 -24.49485 -23.88072 -22.86567 -21.29245 -19.50687 -17.92854 -16.26968 -15.96891 -15.71230 -15.19603 -14.48874 -14.34471 -13.96082 -13.93011 -13.49740 -13.19964 -13.11075 -12.84493 -12.57357 -12.40582 -12.31236 -11.82682 -11.80876 -11.37980 -11.20841 -11.07718 -10.98204 -10.68270 -10.52399 -10.17353 -10.06932 -9.85800 -8.95873 -8.89710 -8.58640 -8.40120 -7.23390 -6.03803 -4.08273 0.79062 1.33233 2.66200 2.96016 3.29750 3.36367 3.39200 3.82602 3.90514 4.39722 4.64921 4.72354 4.99444 5.05922 5.21208 5.30604 5.37947 5.38680 5.52424 5.54239 5.71625 5.92596 6.00696 6.11041 6.20659 6.27522 6.35047 6.36118 6.64675 6.75022 6.78816 6.87108 7.00867 7.10906 7.46789 7.47856 7.67351 7.80240 8.15354 8.27932 8.54706 8.97993 9.56960 11.02973 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.029625 B = 0.004450 C = 0.004295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.908307 B = 6290.924376 C = 6517.458985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.047 4.047 3 C -0.124 4.124 4 C -0.079 4.079 5 C -0.065 4.065 6 C 0.082 3.918 7 N -0.531 5.531 8 C 0.034 3.966 9 C 0.212 3.788 10 H -0.001 1.001 11 C -0.135 4.135 12 C -0.504 4.504 13 H 0.064 0.936 14 C 0.059 3.941 15 N -0.893 5.893 16 Si 0.896 3.104 17 H -0.281 1.281 18 H -0.274 1.274 19 H -0.288 1.288 20 C -0.046 4.046 21 C -0.040 4.040 22 C 0.265 3.735 23 N -0.430 5.430 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.063 0.937 27 H 0.129 0.871 28 H 0.127 0.873 29 H 0.086 0.914 30 H 0.035 0.965 31 H 0.075 0.925 32 H 0.046 0.954 33 H 0.011 0.989 34 H 0.086 0.914 35 H 0.009 0.991 36 H 0.035 0.965 37 H 0.260 0.740 38 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.194 4.902 5.884 16.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.050 4.050 3 C -0.142 4.142 4 C -0.099 4.099 5 C -0.066 4.066 6 C -0.046 4.046 7 N -0.256 5.256 8 C -0.114 4.114 9 C 0.107 3.893 10 H 0.017 0.983 11 C -0.193 4.193 12 C -0.542 4.542 13 H 0.082 0.918 14 C -0.142 4.142 15 N -0.533 5.533 16 Si 0.724 3.276 17 H -0.207 1.207 18 H -0.199 1.199 19 H -0.213 1.213 20 C -0.067 4.067 21 C -0.043 4.043 22 C -0.050 4.050 23 N -0.106 5.106 24 H 0.093 0.907 25 H 0.093 0.907 26 H 0.082 0.918 27 H 0.147 0.853 28 H 0.145 0.855 29 H 0.104 0.896 30 H 0.053 0.947 31 H 0.094 0.906 32 H 0.065 0.935 33 H 0.030 0.970 34 H 0.104 0.896 35 H 0.028 0.972 36 H 0.054 0.946 37 H 0.070 0.930 38 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -15.071 2.947 5.655 16.364 hybrid contribution 1.108 1.021 -0.572 1.611 sum -13.963 3.968 5.083 15.380 Atomic orbital electron populations 1.20863 0.90940 1.03125 1.02696 1.19807 0.95785 0.91639 0.97771 1.20876 0.94050 0.97029 1.02244 1.21356 0.93906 0.98223 0.96392 1.19929 0.96681 0.92144 0.97801 1.21166 0.88833 1.01648 0.92982 1.62186 1.18306 1.33858 1.11251 1.22284 0.98256 0.90080 1.00811 1.19274 0.79958 0.93437 0.96676 0.98294 1.21881 1.03854 0.98453 0.95111 1.21144 0.92722 1.48656 0.91683 0.91823 1.24926 0.96728 0.95251 0.97289 1.69888 1.02738 1.49451 1.31183 0.86524 0.77798 0.78315 0.84920 1.20666 1.19931 1.21350 1.21078 0.91203 0.99081 0.95301 1.15887 0.92282 0.86318 1.09840 1.25703 0.93110 0.92826 0.93364 1.81215 1.09093 1.10844 1.09445 0.90705 0.90717 0.91772 0.85293 0.85485 0.89556 0.94728 0.90605 0.93490 0.97000 0.89587 0.97233 0.94593 0.92971 0.84830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.99 9.61 36.00 0.35 -0.64 16 2 C -0.05 -0.50 5.91 -104.21 -0.62 -1.11 16 3 C -0.12 -1.22 9.69 -39.64 -0.38 -1.60 16 4 C -0.08 -0.92 7.90 -39.49 -0.31 -1.23 16 5 C -0.06 -0.89 4.88 -104.68 -0.51 -1.40 16 6 C 0.08 1.34 4.93 -4.97 -0.02 1.32 16 7 N -0.53 -10.69 4.61 -237.73 -1.10 -11.79 16 8 C 0.03 0.63 8.90 60.06 0.53 1.16 16 9 C 0.21 5.12 2.06 -68.87 -0.14 4.98 16 10 H 0.00 -0.01 8.14 -51.93 -0.42 -0.44 16 11 C -0.13 -3.16 8.76 37.16 0.33 -2.83 16 12 C -0.50 -13.36 7.93 -34.44 -0.27 -13.63 16 13 H 0.06 1.69 6.39 -52.49 -0.34 1.36 16 14 C 0.06 1.60 5.30 -17.82 -0.09 1.50 16 15 N -0.89 -24.90 11.32 55.43 0.63 -24.27 16 16 Si 0.90 20.96 29.54 -169.99 -5.02 15.94 16 17 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 18 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 19 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 20 C -0.05 -0.61 9.40 -39.17 -0.37 -0.98 16 21 C -0.04 -0.49 5.73 -106.93 -0.61 -1.10 16 22 C 0.26 3.58 13.80 -22.47 -0.31 3.27 16 23 N -0.43 -6.55 18.54 41.83 0.78 -5.77 16 24 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 26 H 0.06 0.59 7.09 -51.93 -0.37 0.22 16 27 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 28 H 0.13 1.33 8.00 -52.49 -0.42 0.91 16 29 H 0.09 1.43 5.77 -51.93 -0.30 1.13 16 30 H 0.03 0.55 8.06 -51.93 -0.42 0.14 16 31 H 0.08 1.53 6.23 -51.93 -0.32 1.20 16 32 H 0.05 0.74 5.90 -51.93 -0.31 0.43 16 33 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 34 H 0.09 2.23 6.07 -51.93 -0.32 1.91 16 35 H 0.01 0.18 6.20 -51.93 -0.32 -0.14 16 36 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 38 H 0.13 1.77 8.06 -52.48 -0.42 1.35 16 LS Contribution 314.94 15.07 4.75 4.75 Total: -1.00 -28.64 314.94 -7.61 -36.25 By element: Atomic # 1 Polarization: 2.40 SS G_CDS: -5.20 Total: -2.80 kcal Atomic # 6 Polarization: -9.86 SS G_CDS: -2.44 Total: -12.30 kcal Atomic # 7 Polarization: -42.14 SS G_CDS: 0.31 Total: -41.84 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -28.64 -7.61 -36.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599310869.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.690 kcal (2) G-P(sol) polarization free energy of solvation -28.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.254 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds