Wall clock time and date at job start Mon Mar 30 2020 07:10:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37972 * 120.07636 * 2 1 4 4 C 1.38341 * 120.14953 * 179.72750 * 3 2 1 5 5 C 1.38382 * 120.30601 * 0.50864 * 4 3 2 6 6 C 1.50705 * 119.92441 * 179.76789 * 5 4 3 7 7 N 1.46898 * 109.46881 * 269.72300 * 6 5 4 8 8 C 1.46896 * 111.00178 * 66.04709 * 7 6 5 9 9 C 1.46903 * 110.99849 * 190.00038 * 7 6 5 10 10 H 1.09003 * 109.46808 * 300.00462 * 9 7 6 11 11 C 1.53000 * 109.47120 * 60.00056 * 9 7 6 12 12 C 1.50694 * 109.47066 * 180.02562 * 9 7 6 13 13 H 1.08000 * 120.00563 * 359.97438 * 12 9 7 14 14 C 1.37885 * 119.99902 * 180.02562 * 12 9 7 15 15 N 1.31516 * 119.99913 * 359.97438 * 14 12 9 16 16 Si 1.86798 * 119.99766 * 179.97438 * 14 12 9 17 17 H 1.48500 * 109.47353 * 269.99586 * 16 14 12 18 18 H 1.48501 * 109.47293 * 30.00037 * 16 14 12 19 19 H 1.48504 * 109.46680 * 149.99835 * 16 14 12 20 20 C 1.37926 * 120.15108 * 359.49068 * 5 4 3 21 21 C 1.39617 * 120.07974 * 179.97438 * 2 1 3 22 22 C 1.43202 * 120.14580 * 0.02562 * 21 2 1 23 23 N 3.48493 * 80.49605 * 179.97438 * 2 1 3 24 24 H 1.09004 * 109.47056 * 270.02182 * 1 2 3 25 25 H 1.09004 * 109.46945 * 30.02138 * 1 2 3 26 26 H 1.08997 * 109.46976 * 150.02501 * 1 2 3 27 27 H 1.07999 * 119.92833 * 359.97431 * 3 2 1 28 28 H 1.07998 * 119.84826 * 180.27575 * 4 3 2 29 29 H 1.09005 * 109.46912 * 149.72520 * 6 5 4 30 30 H 1.08999 * 109.47231 * 29.72218 * 6 5 4 31 31 H 1.09000 * 109.47187 * 183.95237 * 8 7 6 32 32 H 1.08996 * 109.47272 * 303.95406 * 8 7 6 33 33 H 1.09005 * 109.47145 * 63.94894 * 8 7 6 34 34 H 1.08997 * 109.47359 * 180.02562 * 11 9 7 35 35 H 1.09007 * 109.47356 * 300.00024 * 11 9 7 36 36 H 1.09000 * 109.47156 * 59.99749 * 11 9 7 37 37 H 0.97001 * 119.99646 * 179.97438 * 15 14 12 38 38 H 1.08004 * 120.07562 * 180.23495 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1940 0.0000 4 6 3.5818 1.1957 0.0057 5 6 4.2817 0.0019 0.0008 6 6 5.7887 0.0139 0.0018 7 7 6.2792 0.0173 -1.3829 8 6 5.9202 1.2675 -2.0655 9 6 7.7299 -0.2093 -1.4280 10 1 8.2384 0.5805 -0.8751 11 6 8.0543 -1.5644 -0.7959 12 6 8.1956 -0.1986 -2.8612 13 1 7.4850 -0.0398 -3.6588 14 6 9.5289 -0.3926 -3.1542 15 7 10.3942 -0.5866 -2.1830 16 14 10.1061 -0.3800 -4.9308 17 1 10.0405 -1.7572 -5.4824 18 1 9.2309 0.5153 -5.7293 19 1 11.5059 0.1119 -4.9929 20 6 3.6032 -1.1989 0.0008 21 6 2.2067 -1.2081 0.0005 22 6 1.4956 -2.4511 0.0005 23 7 0.9316 -3.4371 0.0015 24 1 -0.3633 0.0004 1.0277 25 1 -0.3633 0.8898 -0.5142 26 1 -0.3633 -0.8902 -0.5134 27 1 1.6585 2.1293 -0.0004 28 1 4.1181 2.1331 0.0102 29 1 6.1587 -0.8730 0.5162 30 1 6.1446 0.9070 0.5155 31 1 6.2335 1.2150 -3.1082 32 1 4.8408 1.4108 -2.0173 33 1 6.4200 2.1044 -1.5776 34 1 9.1308 -1.7324 -0.8290 35 1 7.7175 -1.5718 0.2408 36 1 7.5458 -2.3543 -1.3488 37 1 11.3321 -0.7234 -2.3892 38 1 4.1506 -2.1299 0.0008 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599310869.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:10:30 Heat of formation + Delta-G solvation = 38.712567 kcal Electronic energy + Delta-G solvation = -18544.488440 eV Core-core repulsion = 15772.261134 eV Total energy + Delta-G solvation = -2772.227306 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.82483 -38.69283 -37.41575 -35.13406 -33.71919 -32.27864 -31.00518 -29.65719 -27.43101 -26.13100 -24.95449 -24.20154 -22.31694 -21.20975 -19.05433 -18.19978 -17.19329 -16.78660 -16.55373 -15.85623 -15.61416 -15.41573 -15.19359 -14.82012 -14.27534 -14.09819 -14.04230 -13.91802 -13.73322 -13.37845 -13.18394 -12.98246 -12.85351 -12.70162 -12.55595 -12.37506 -12.22923 -12.08267 -12.01034 -11.85769 -11.46996 -10.85834 -10.49025 -9.84477 -9.51270 -8.85737 -8.08760 -6.19815 -0.15827 0.41540 1.43592 1.45200 1.54408 1.59914 1.94273 2.44428 2.84049 2.90907 3.20146 3.58520 3.80607 3.90537 4.07710 4.24934 4.36269 4.56726 4.62241 4.73992 4.77295 4.80718 4.81496 4.83183 5.01053 5.04656 5.08234 5.14918 5.25327 5.31646 5.36869 5.50229 5.54101 5.66058 5.75795 5.83550 5.94547 6.29918 6.43257 6.43864 6.77691 6.95447 7.49355 8.96891 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.029625 B = 0.004450 C = 0.004295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.908307 B = 6290.924376 C = 6517.458985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.036 4.036 3 C -0.112 4.112 4 C -0.075 4.075 5 C -0.082 4.082 6 C 0.086 3.914 7 N -0.541 5.541 8 C 0.040 3.960 9 C 0.216 3.784 10 H -0.033 1.033 11 C -0.124 4.124 12 C -0.517 4.517 13 H 0.059 0.941 14 C 0.012 3.988 15 N -0.920 5.920 16 Si 0.956 3.044 17 H -0.279 1.279 18 H -0.268 1.268 19 H -0.285 1.285 20 C -0.054 4.054 21 C -0.052 4.052 22 C 0.282 3.718 23 N -0.466 5.466 24 H 0.088 0.912 25 H 0.099 0.901 26 H 0.052 0.948 27 H 0.167 0.833 28 H 0.141 0.859 29 H 0.078 0.922 30 H 0.039 0.961 31 H 0.053 0.947 32 H 0.078 0.922 33 H 0.011 0.989 34 H 0.058 0.942 35 H 0.034 0.966 36 H 0.029 0.971 37 H 0.261 0.739 38 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.216 6.466 5.730 18.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.039 4.039 3 C -0.130 4.130 4 C -0.094 4.094 5 C -0.083 4.083 6 C -0.042 4.042 7 N -0.265 5.265 8 C -0.109 4.109 9 C 0.110 3.890 10 H -0.015 1.015 11 C -0.182 4.182 12 C -0.555 4.555 13 H 0.077 0.923 14 C -0.186 4.186 15 N -0.560 5.560 16 Si 0.782 3.218 17 H -0.205 1.205 18 H -0.192 1.192 19 H -0.210 1.210 20 C -0.075 4.075 21 C -0.055 4.055 22 C -0.032 4.032 23 N -0.142 5.142 24 H 0.107 0.893 25 H 0.118 0.882 26 H 0.071 0.929 27 H 0.184 0.816 28 H 0.159 0.841 29 H 0.096 0.904 30 H 0.057 0.943 31 H 0.072 0.928 32 H 0.097 0.903 33 H 0.030 0.970 34 H 0.077 0.923 35 H 0.053 0.947 36 H 0.048 0.952 37 H 0.070 0.930 38 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -17.114 4.514 5.505 18.536 hybrid contribution 1.657 0.583 -0.465 1.817 sum -15.457 5.098 5.040 17.038 Atomic orbital electron populations 1.20949 0.89094 1.03812 1.03794 1.20153 0.97110 0.91024 0.95606 1.21227 0.93289 0.98152 1.00310 1.21551 0.94855 0.97751 0.95289 1.19654 0.94831 0.93296 1.00482 1.21114 0.90969 1.01432 0.90667 1.62084 1.15456 1.35021 1.13935 1.22243 1.00118 0.89300 0.99202 1.19047 0.82360 0.92555 0.95072 1.01507 1.21695 1.01911 0.97947 0.96628 1.21446 0.92925 1.48310 0.92850 0.92278 1.25669 0.96962 0.95071 1.00943 1.70014 1.02877 1.50223 1.32909 0.85583 0.77349 0.78281 0.80568 1.20503 1.19205 1.21043 1.21006 0.91763 0.98776 0.95944 1.15937 0.91828 0.86587 1.11178 1.25881 0.92345 0.92677 0.92308 1.81225 1.10342 1.11760 1.10922 0.89306 0.88199 0.92938 0.81572 0.84082 0.90379 0.94287 0.92809 0.90317 0.97028 0.92294 0.94726 0.95214 0.93029 0.85841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.54 9.61 71.24 0.68 -0.86 16 2 C -0.04 -0.63 5.91 -19.60 -0.12 -0.75 16 3 C -0.11 -1.70 9.69 22.23 0.22 -1.49 16 4 C -0.08 -1.48 7.90 22.33 0.18 -1.30 16 5 C -0.08 -2.11 4.88 -19.90 -0.10 -2.21 16 6 C 0.09 2.76 4.93 85.56 0.42 3.18 16 7 N -0.54 -21.69 4.61 -906.04 -4.18 -25.87 16 8 C 0.04 1.42 8.90 127.69 1.14 2.56 16 9 C 0.22 10.66 2.06 44.17 0.09 10.75 16 10 H -0.03 -1.78 8.14 -2.39 -0.02 -1.80 16 11 C -0.12 -5.91 8.76 71.98 0.63 -5.28 16 12 C -0.52 -27.86 7.93 25.60 0.20 -27.65 16 13 H 0.06 3.17 6.39 -2.91 -0.02 3.16 16 14 C 0.01 0.66 5.30 84.66 0.45 1.11 16 15 N -0.92 -52.34 11.32 21.45 0.24 -52.09 16 16 Si 0.96 43.26 29.54 68.60 2.03 45.29 16 17 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 18 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 19 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 20 C -0.05 -1.38 9.40 22.54 0.21 -1.17 16 21 C -0.05 -1.19 5.73 -21.36 -0.12 -1.31 16 22 C 0.28 7.39 13.80 88.33 1.22 8.61 16 23 N -0.47 -14.04 18.54 19.00 0.35 -13.69 16 24 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 25 H 0.10 0.82 8.09 -2.38 -0.02 0.80 16 26 H 0.05 0.83 7.09 -2.39 -0.02 0.81 16 27 H 0.17 1.36 8.06 -2.91 -0.02 1.34 16 28 H 0.14 2.40 8.00 -2.91 -0.02 2.38 16 29 H 0.08 2.59 5.77 -2.38 -0.01 2.58 16 30 H 0.04 1.22 8.06 -2.39 -0.02 1.20 16 31 H 0.05 2.15 6.23 -2.39 -0.01 2.14 16 32 H 0.08 2.29 5.90 -2.39 -0.01 2.27 16 33 H 0.01 0.40 8.14 -2.38 -0.02 0.38 16 34 H 0.06 3.14 6.07 -2.39 -0.01 3.12 16 35 H 0.03 1.43 6.20 -2.38 -0.01 1.41 16 36 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.26 14.14 8.31 -92.71 -0.77 13.37 16 38 H 0.12 3.33 8.06 -2.91 -0.02 3.31 16 Total: -1.00 -62.74 314.94 4.60 -58.14 By element: Atomic # 1 Polarization: 3.00 SS G_CDS: 1.06 Total: 4.05 kcal Atomic # 6 Polarization: -20.93 SS G_CDS: 5.10 Total: -15.82 kcal Atomic # 7 Polarization: -88.07 SS G_CDS: -3.59 Total: -91.66 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Total: -62.74 4.60 -58.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599310869.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.850 kcal (2) G-P(sol) polarization free energy of solvation -62.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds