Wall clock time and date at job start Mon Mar 30 2020 07:30:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47338 * 2 1 4 4 H 1.08999 * 109.46721 * 54.92393 * 3 2 1 5 5 C 1.50707 * 109.47015 * 174.92451 * 3 2 1 6 6 H 1.07997 * 119.99755 * 120.00105 * 5 3 2 7 7 C 1.37869 * 119.99880 * 299.99910 * 5 3 2 8 8 N 1.31514 * 120.00292 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00065 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.46814 * 60.00004 * 9 7 5 11 11 H 1.48500 * 109.47505 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.47020 * 300.00261 * 9 7 5 13 13 N 1.46900 * 109.47040 * 294.92161 * 3 2 1 14 14 C 1.46901 * 110.99593 * 154.12997 * 13 3 2 15 15 C 1.50699 * 109.46798 * 185.62420 * 14 13 3 16 16 C 1.38391 * 119.92337 * 269.72592 * 15 14 13 17 17 C 1.38342 * 120.30353 * 179.76843 * 16 15 14 18 18 C 1.37969 * 120.15310 * 0.51081 * 17 16 15 19 19 C 1.50693 * 120.07960 * 179.72550 * 18 17 16 20 20 C 1.39619 * 119.84268 * 359.74235 * 18 17 16 21 21 C 1.43205 * 120.14854 * 179.97438 * 20 18 17 22 22 N 8.20062 * 53.44641 * 322.38913 * 2 1 3 23 23 C 1.37928 * 119.92584 * 90.00658 * 15 14 13 24 24 H 1.08994 * 109.47414 * 180.48979 * 1 2 3 25 25 H 1.09002 * 109.47109 * 300.49032 * 1 2 3 26 26 H 1.09000 * 109.47210 * 60.48608 * 1 2 3 27 27 H 1.09001 * 109.47088 * 240.00265 * 2 1 3 28 28 H 1.08996 * 109.47191 * 120.00272 * 2 1 3 29 29 H 0.97001 * 120.00272 * 179.97438 * 8 7 5 30 30 H 1.00892 * 111.00259 * 278.08976 * 13 3 2 31 31 H 1.08997 * 109.47139 * 305.62219 * 14 13 3 32 32 H 1.09000 * 109.46878 * 65.62812 * 14 13 3 33 33 H 1.08000 * 119.84771 * 0.02562 * 16 15 14 34 34 H 1.08001 * 119.92321 * 180.25722 * 17 16 15 35 35 H 1.09000 * 109.47071 * 270.02060 * 19 18 17 36 36 H 1.09006 * 109.47213 * 30.02211 * 19 18 17 37 37 H 1.09001 * 109.47392 * 150.01788 * 19 18 17 38 38 H 1.07994 * 120.07784 * 359.94781 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6044 1.9819 0.8410 5 6 3.5419 1.4443 0.1257 6 1 4.1481 1.8885 -0.6499 7 6 4.1418 0.8789 1.2308 8 7 3.4035 0.3375 2.1750 9 14 6.0032 0.8817 1.3870 10 1 6.4977 2.2819 1.3873 11 1 6.3945 0.2177 2.6563 12 1 6.5972 0.1472 0.2412 13 7 1.6531 2.0987 -1.2560 14 6 1.5540 3.5539 -1.0809 15 6 1.0235 4.1771 -2.3463 16 6 1.9016 4.5932 -3.3317 17 6 1.4229 5.1619 -4.4984 18 6 0.0657 5.3277 -4.6825 19 6 -0.4536 5.9530 -5.9514 20 6 -0.8256 4.9149 -3.6902 21 6 -2.2356 5.0843 -3.8743 22 7 -3.3541 5.2185 -4.0204 23 6 -0.3358 4.3368 -2.5172 24 1 -0.3634 -1.0275 0.0088 25 1 -0.3633 0.5214 0.8856 26 1 -0.3633 0.5063 -0.8943 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 3.8256 -0.0606 2.9523 30 1 2.2959 1.8667 -1.9982 31 1 0.8775 3.7753 -0.2555 32 1 2.5408 3.9613 -0.8612 33 1 2.9652 4.4696 -3.1909 34 1 2.1135 5.4807 -5.2651 35 1 -0.5241 7.0330 -5.8218 36 1 0.2280 5.7293 -6.7721 37 1 -1.4403 5.5491 -6.1783 38 1 -1.0198 4.0150 -1.7459 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599437585.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:30:19 Heat of formation + Delta-G solvation = 34.643483 kcal Electronic energy + Delta-G solvation = -18265.365417 eV Core-core repulsion = 15492.961662 eV Total energy + Delta-G solvation = -2772.403755 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.73760 -36.72961 -36.05488 -33.77981 -31.97364 -31.30334 -30.83435 -28.02197 -26.09618 -23.90197 -23.61206 -22.37455 -21.22420 -19.54351 -17.86356 -16.76903 -15.84230 -15.70628 -14.91888 -14.51149 -14.42441 -13.98292 -13.60639 -13.28271 -13.19526 -13.05739 -12.85025 -12.66309 -12.53768 -12.13003 -11.92921 -11.62838 -11.33706 -11.27060 -11.16915 -10.97483 -10.77066 -10.67021 -10.18970 -9.63423 -9.57372 -9.12304 -8.92754 -8.54106 -8.42050 -7.33295 -6.04093 -4.17676 0.80277 1.34431 2.65036 2.96825 3.24722 3.30807 3.32347 3.84343 3.90153 4.35399 4.66080 4.73754 5.04840 5.10129 5.21493 5.38416 5.40691 5.53958 5.55958 5.62440 5.77432 6.00707 6.07291 6.32111 6.35690 6.37302 6.39464 6.50159 6.69517 6.71890 6.87113 7.09391 7.15654 7.38704 7.46761 7.54195 7.73147 8.03394 8.07536 8.26421 8.58269 8.94124 9.50327 10.96077 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.026824 B = 0.004546 C = 0.004029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.572945 B = 6157.951687 C = 6948.050077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.106 4.106 3 C 0.215 3.785 4 H 0.033 0.967 5 C -0.548 4.548 6 H 0.053 0.947 7 C 0.069 3.931 8 N -0.884 5.884 9 Si 0.889 3.111 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.277 1.277 13 N -0.683 5.683 14 C 0.099 3.901 15 C -0.069 4.069 16 C -0.079 4.079 17 C -0.123 4.123 18 C -0.048 4.048 19 C -0.120 4.120 20 C -0.041 4.041 21 C 0.265 3.735 22 N -0.432 5.432 23 C -0.047 4.047 24 H 0.024 0.976 25 H 0.036 0.964 26 H 0.048 0.952 27 H 0.030 0.970 28 H 0.090 0.910 29 H 0.262 0.738 30 H 0.329 0.671 31 H 0.072 0.928 32 H 0.042 0.958 33 H 0.129 0.871 34 H 0.129 0.871 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.063 0.937 38 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.962 8.757 -11.170 14.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.144 4.144 3 C 0.108 3.892 4 H 0.051 0.949 5 C -0.587 4.587 6 H 0.071 0.929 7 C -0.134 4.134 8 N -0.522 5.522 9 Si 0.717 3.283 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.203 1.203 13 N -0.312 5.312 14 C -0.030 4.030 15 C -0.069 4.069 16 C -0.098 4.098 17 C -0.141 4.141 18 C -0.051 4.051 19 C -0.176 4.176 20 C -0.045 4.045 21 C -0.050 4.050 22 N -0.107 5.107 23 C -0.068 4.068 24 H 0.043 0.957 25 H 0.055 0.945 26 H 0.067 0.933 27 H 0.049 0.951 28 H 0.109 0.891 29 H 0.072 0.928 30 H 0.146 0.854 31 H 0.091 0.909 32 H 0.060 0.940 33 H 0.147 0.853 34 H 0.147 0.853 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.082 0.918 38 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -5.375 8.751 -11.087 15.112 hybrid contribution 2.504 0.075 0.340 2.528 sum -2.871 8.826 -10.747 14.200 Atomic orbital electron populations 1.21707 0.99007 0.98424 1.00392 1.21495 0.92093 0.99143 1.01701 1.19174 0.92891 0.91291 0.85888 0.94902 1.21808 0.92668 1.38639 1.05621 0.92862 1.24922 0.97915 0.94906 0.95679 1.69862 1.34963 1.37959 1.09403 0.86717 0.86018 0.78186 0.77412 1.20383 1.21243 1.20277 1.60947 1.55182 1.04769 1.10350 1.20797 0.99383 0.90555 0.92278 1.20078 0.92536 0.97114 0.97200 1.21385 1.00331 0.95482 0.92644 1.20894 0.93965 1.01048 0.98211 1.19806 0.93100 0.97352 0.94837 1.20862 1.01531 1.00777 0.94459 1.15900 0.84260 1.07033 0.97281 1.25725 0.92733 0.93254 0.93261 1.81214 1.11922 1.09401 1.08187 1.21081 0.95683 0.94848 0.95196 0.95665 0.94501 0.93293 0.95074 0.89142 0.92762 0.85432 0.90920 0.93982 0.85297 0.85316 0.90722 0.90723 0.91808 0.84960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.76 9.80 37.16 0.36 -2.40 16 2 C -0.11 -2.44 5.45 -26.73 -0.15 -2.58 16 3 C 0.22 5.00 1.98 -68.86 -0.14 4.86 16 4 H 0.03 0.85 7.70 -51.93 -0.40 0.45 16 5 C -0.55 -13.95 8.47 -34.44 -0.29 -14.24 16 6 H 0.05 1.33 7.73 -52.49 -0.41 0.92 16 7 C 0.07 1.80 5.29 -17.82 -0.09 1.71 16 8 N -0.88 -24.16 11.29 55.43 0.63 -23.53 16 9 Si 0.89 20.32 29.54 -169.99 -5.02 15.30 16 10 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 11 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 12 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 13 N -0.68 -13.05 5.67 -109.22 -0.62 -13.67 16 14 C 0.10 1.64 5.64 -4.98 -0.03 1.61 16 15 C -0.07 -0.93 5.43 -104.68 -0.57 -1.49 16 16 C -0.08 -0.92 9.69 -39.49 -0.38 -1.30 16 17 C -0.12 -1.22 9.69 -39.64 -0.38 -1.61 16 18 C -0.05 -0.50 5.91 -104.21 -0.62 -1.12 16 19 C -0.12 -0.99 9.61 36.00 0.35 -0.65 16 20 C -0.04 -0.50 5.73 -106.93 -0.61 -1.11 16 21 C 0.26 3.51 13.80 -22.47 -0.31 3.20 16 22 N -0.43 -6.45 18.54 41.83 0.78 -5.68 16 23 C -0.05 -0.61 9.41 -39.17 -0.37 -0.98 16 24 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 25 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 26 H 0.05 0.94 7.77 -51.93 -0.40 0.53 16 27 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.09 2.35 5.95 -51.93 -0.31 2.04 16 29 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 30 H 0.33 6.24 8.45 -39.30 -0.33 5.91 16 31 H 0.07 1.22 7.85 -51.93 -0.41 0.81 16 32 H 0.04 0.73 8.06 -51.93 -0.42 0.31 16 33 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 34 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 37 H 0.06 0.58 7.09 -51.93 -0.37 0.21 16 38 H 0.13 1.68 8.06 -52.49 -0.42 1.26 16 LS Contribution 325.99 15.07 4.91 4.91 Total: -1.00 -27.30 325.99 -8.11 -35.42 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -5.56 Total: 3.36 kcal Atomic # 6 Polarization: -12.88 SS G_CDS: -3.23 Total: -16.11 kcal Atomic # 7 Polarization: -43.66 SS G_CDS: 0.78 Total: -42.88 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -27.30 -8.11 -35.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599437585.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.059 kcal (2) G-P(sol) polarization free energy of solvation -27.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds