Wall clock time and date at job start Mon Mar 30 2020 08:01:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46494 * 120.00267 * 2 1 4 4 C 1.50702 * 109.47370 * 270.00470 * 3 2 1 5 5 H 1.08000 * 120.00083 * 359.97438 * 4 3 2 6 6 C 1.37875 * 120.00013 * 180.02562 * 4 3 2 7 7 N 1.31517 * 119.99778 * 180.02562 * 6 4 3 8 8 Si 1.86799 * 120.00292 * 359.97438 * 6 4 3 9 9 H 1.48498 * 109.46949 * 90.00028 * 8 6 4 10 10 H 1.48494 * 109.47462 * 210.00109 * 8 6 4 11 11 H 1.48500 * 109.46899 * 330.00592 * 8 6 4 12 12 C 1.34779 * 119.99691 * 180.02562 * 2 1 3 13 13 O 1.21638 * 119.99772 * 184.59806 * 12 2 1 14 14 C 1.47155 * 120.00244 * 4.59562 * 12 2 1 15 15 C 1.36050 * 123.46663 * 319.17552 * 14 12 2 16 16 S 1.70445 * 110.83160 * 179.70831 * 15 14 12 17 17 C 1.75505 * 92.45845 * 0.26468 * 16 15 14 18 18 C 1.32847 * 110.57904 * 0.02562 * 17 16 15 19 19 Cl 1.73598 * 123.46956 * 180.02562 * 18 17 16 20 20 H 1.08996 * 109.46639 * 264.36929 * 1 2 3 21 21 H 1.09004 * 109.47118 * 24.36681 * 1 2 3 22 22 H 1.08998 * 109.47104 * 144.37149 * 1 2 3 23 23 H 1.08997 * 109.46998 * 30.00322 * 3 2 1 24 24 H 1.08998 * 109.47342 * 150.00257 * 3 2 1 25 25 H 0.97002 * 120.00013 * 179.97438 * 7 6 4 26 26 H 1.08001 * 124.58369 * 359.96944 * 15 14 12 27 27 H 1.07995 * 124.71226 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0981 1.0959 -2.2417 6 6 3.1270 2.8774 -1.6727 7 7 3.3456 3.2574 -2.9127 8 14 3.7340 3.9286 -0.2529 9 1 5.1071 3.5066 0.1236 10 1 3.7501 5.3552 -0.6646 11 1 2.8276 3.7594 0.9111 12 6 2.1389 -1.1673 -0.0005 13 8 3.3523 -1.1690 0.0839 14 6 1.4066 -2.4396 -0.1032 15 6 0.2392 -2.6881 0.5498 16 16 -0.3317 -4.2546 0.1957 17 6 1.0336 -4.5971 -0.8527 18 6 1.8556 -3.5548 -0.9045 19 17 3.3144 -3.5319 -1.8451 20 1 -0.3632 -0.1008 1.0227 21 1 -0.3633 0.9362 -0.4240 22 1 -0.3633 -0.8353 -0.5986 23 1 1.6085 2.0283 0.5139 24 1 3.1500 1.1383 0.5138 25 1 3.8225 4.0833 -3.0899 26 1 -0.2605 -1.9862 1.2009 27 1 1.1849 -5.5265 -1.3815 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601013550.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:01:55 Heat of formation + Delta-G solvation = 2.568705 kcal Electronic energy + Delta-G solvation = -14957.192234 eV Core-core repulsion = 12254.332782 eV Total energy + Delta-G solvation = -2702.859451 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 259.017 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.51684 -37.13814 -35.74043 -34.95674 -32.54798 -30.20369 -28.14903 -26.38752 -24.53070 -22.59550 -20.30805 -18.88625 -17.56449 -16.92570 -16.54577 -15.44328 -14.78422 -14.57955 -14.01059 -13.69479 -13.35284 -13.05279 -12.77512 -12.36797 -12.23923 -11.93824 -11.53606 -11.42410 -11.25109 -10.91709 -10.63328 -10.52525 -10.16832 -9.55910 -9.18656 -8.92866 -8.58362 -8.37272 -7.73653 -6.07938 -4.07116 0.73004 1.21906 1.63681 2.00585 2.66835 3.29640 3.35274 3.37612 3.44649 3.92827 4.40061 4.63894 4.98290 5.21886 5.27482 5.43053 5.58048 5.73229 5.81524 5.89467 6.11902 6.67168 6.93094 7.28898 7.59905 8.16250 8.46650 8.87585 8.96980 9.51707 11.05388 Molecular weight = 259.02amu Principal moments of inertia in cm(-1) A = 0.029413 B = 0.006431 C = 0.005722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.725006 B = 4352.844568 C = 4891.904931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.588 5.588 3 C 0.216 3.784 4 C -0.530 4.530 5 H 0.075 0.925 6 C 0.073 3.927 7 N -0.896 5.896 8 Si 0.876 3.124 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.266 1.266 12 C 0.566 3.434 13 O -0.519 6.519 14 C -0.127 4.127 15 C -0.216 4.216 16 S 0.198 5.802 17 C -0.236 4.236 18 C -0.007 4.007 19 Cl -0.021 7.021 20 H 0.045 0.955 21 H 0.079 0.921 22 H 0.063 0.937 23 H 0.032 0.968 24 H 0.040 0.960 25 H 0.265 0.735 26 H 0.181 0.819 27 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.977 -14.719 6.931 19.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.320 5.320 3 C 0.096 3.904 4 C -0.568 4.568 5 H 0.093 0.907 6 C -0.129 4.129 7 N -0.535 5.535 8 Si 0.703 3.297 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.191 1.191 12 C 0.350 3.650 13 O -0.396 6.396 14 C -0.145 4.145 15 C -0.353 4.353 16 S 0.462 5.538 17 C -0.372 4.372 18 C -0.047 4.047 19 Cl 0.008 6.992 20 H 0.063 0.937 21 H 0.098 0.902 22 H 0.082 0.918 23 H 0.050 0.950 24 H 0.058 0.942 25 H 0.075 0.925 26 H 0.198 0.802 27 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -10.369 -15.350 7.220 19.881 hybrid contribution 1.647 1.527 -0.005 2.246 sum -8.722 -13.823 7.215 17.866 Atomic orbital electron populations 1.21889 0.81122 1.03670 0.99841 1.47700 1.06264 1.06755 1.71242 1.19725 0.92595 0.79526 0.98572 1.21323 1.37105 1.07242 0.91174 0.90669 1.24848 0.95190 0.97315 0.95576 1.69899 1.41385 1.23534 1.18648 0.86855 0.80199 0.79751 0.82914 1.19848 1.21060 1.19056 1.17376 0.86939 0.82473 0.78186 1.90799 1.12977 1.86681 1.49128 1.20262 0.96390 0.96515 1.01322 1.25780 1.00008 1.03029 1.06482 1.82905 1.22435 1.07172 1.41255 1.25318 0.99862 1.03459 1.08586 1.20718 0.91972 0.93683 0.98285 1.98409 1.32836 1.98399 1.69537 0.93701 0.90225 0.91811 0.95001 0.94232 0.92546 0.80186 0.80629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.22 9.00 59.85 0.54 1.76 15 2 N -0.59 -12.42 2.86 -184.34 -0.53 -12.94 15 3 C 0.22 5.33 4.24 -5.20 -0.02 5.31 15 4 C -0.53 -15.37 9.94 -34.44 -0.34 -15.71 15 5 H 0.08 2.40 8.06 -52.49 -0.42 1.98 15 6 C 0.07 2.15 5.47 -17.82 -0.10 2.05 15 7 N -0.90 -27.82 13.96 55.43 0.77 -27.05 15 8 Si 0.88 21.65 27.47 -169.99 -4.67 16.98 15 9 H -0.27 -6.81 7.11 56.52 0.40 -6.40 15 10 H -0.28 -6.89 7.11 56.52 0.40 -6.49 15 11 H -0.27 -6.15 6.54 56.52 0.37 -5.78 15 12 C 0.57 12.21 7.28 -12.64 -0.09 12.11 15 13 O -0.52 -13.21 15.76 5.24 0.08 -13.13 15 14 C -0.13 -2.14 5.23 -104.61 -0.55 -2.69 15 15 C -0.22 -2.66 8.58 29.95 0.26 -2.41 15 16 S 0.20 1.87 23.02 -107.50 -2.47 -0.61 15 17 C -0.24 -2.76 11.00 28.88 0.32 -2.44 15 18 C -0.01 -0.12 6.47 -38.98 -0.25 -0.37 15 19 Cl -0.02 -0.36 28.10 -51.86 -1.46 -1.82 15 20 H 0.04 0.54 7.10 -51.93 -0.37 0.17 15 21 H 0.08 1.26 8.03 -51.93 -0.42 0.84 15 22 H 0.06 0.89 6.03 -51.93 -0.31 0.57 15 23 H 0.03 0.74 7.13 -51.93 -0.37 0.37 15 24 H 0.04 1.04 6.79 -51.93 -0.35 0.69 15 25 H 0.26 7.66 8.31 -40.82 -0.34 7.32 15 26 H 0.18 1.84 6.04 -52.49 -0.32 1.53 15 27 H 0.18 1.57 8.06 -52.49 -0.42 1.15 15 LS Contribution 264.68 15.07 3.99 3.99 Total: -1.00 -34.34 264.68 -6.67 -41.01 By element: Atomic # 1 Polarization: -1.90 SS G_CDS: -2.15 Total: -4.05 kcal Atomic # 6 Polarization: -2.14 SS G_CDS: -0.24 Total: -2.38 kcal Atomic # 7 Polarization: -40.24 SS G_CDS: 0.25 Total: -39.99 kcal Atomic # 8 Polarization: -13.21 SS G_CDS: 0.08 Total: -13.13 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.67 Total: 16.98 kcal Atomic # 16 Polarization: 1.87 SS G_CDS: -2.47 Total: -0.61 kcal Atomic # 17 Polarization: -0.36 SS G_CDS: -1.46 Total: -1.82 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -34.34 -6.67 -41.01 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601013550.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.578 kcal (2) G-P(sol) polarization free energy of solvation -34.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.009 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds