Wall clock time and date at job start Mon Mar 30 2020 08:01:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46494 * 120.00267 * 2 1 4 4 C 1.50702 * 109.47370 * 270.00470 * 3 2 1 5 5 H 1.08000 * 120.00083 * 359.97438 * 4 3 2 6 6 C 1.37875 * 120.00013 * 180.02562 * 4 3 2 7 7 N 1.31517 * 119.99778 * 180.02562 * 6 4 3 8 8 Si 1.86799 * 120.00292 * 359.97438 * 6 4 3 9 9 H 1.48498 * 109.46949 * 90.00028 * 8 6 4 10 10 H 1.48494 * 109.47462 * 210.00109 * 8 6 4 11 11 H 1.48500 * 109.46899 * 330.00592 * 8 6 4 12 12 C 1.34779 * 119.99691 * 180.02562 * 2 1 3 13 13 O 1.21638 * 119.99772 * 184.59806 * 12 2 1 14 14 C 1.47155 * 120.00244 * 4.59562 * 12 2 1 15 15 C 1.36050 * 123.46663 * 319.17552 * 14 12 2 16 16 S 1.70445 * 110.83160 * 179.70831 * 15 14 12 17 17 C 1.75505 * 92.45845 * 0.26468 * 16 15 14 18 18 C 1.32847 * 110.57904 * 0.02562 * 17 16 15 19 19 Cl 1.73598 * 123.46956 * 180.02562 * 18 17 16 20 20 H 1.08996 * 109.46639 * 264.36929 * 1 2 3 21 21 H 1.09004 * 109.47118 * 24.36681 * 1 2 3 22 22 H 1.08998 * 109.47104 * 144.37149 * 1 2 3 23 23 H 1.08997 * 109.46998 * 30.00322 * 3 2 1 24 24 H 1.08998 * 109.47342 * 150.00257 * 3 2 1 25 25 H 0.97002 * 120.00013 * 179.97438 * 7 6 4 26 26 H 1.08001 * 124.58369 * 359.96944 * 15 14 12 27 27 H 1.07995 * 124.71226 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0981 1.0959 -2.2417 6 6 3.1270 2.8774 -1.6727 7 7 3.3456 3.2574 -2.9127 8 14 3.7340 3.9286 -0.2529 9 1 5.1071 3.5066 0.1236 10 1 3.7501 5.3552 -0.6646 11 1 2.8276 3.7594 0.9111 12 6 2.1389 -1.1673 -0.0005 13 8 3.3523 -1.1690 0.0839 14 6 1.4066 -2.4396 -0.1032 15 6 0.2392 -2.6881 0.5498 16 16 -0.3317 -4.2546 0.1957 17 6 1.0336 -4.5971 -0.8527 18 6 1.8556 -3.5548 -0.9045 19 17 3.3144 -3.5319 -1.8451 20 1 -0.3632 -0.1008 1.0227 21 1 -0.3633 0.9362 -0.4240 22 1 -0.3633 -0.8353 -0.5986 23 1 1.6085 2.0283 0.5139 24 1 3.1500 1.1383 0.5138 25 1 3.8225 4.0833 -3.0899 26 1 -0.2605 -1.9862 1.2009 27 1 1.1849 -5.5265 -1.3815 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601013550.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:01:54 Heat of formation + Delta-G solvation = -21.972201 kcal Electronic energy + Delta-G solvation = -14958.256407 eV Core-core repulsion = 12254.332782 eV Total energy + Delta-G solvation = -2703.923625 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 259.017 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.97755 -38.37262 -36.95681 -36.63942 -34.69282 -31.57279 -29.82879 -27.77410 -25.92974 -24.27524 -21.70063 -20.12617 -19.15820 -18.66891 -17.90854 -17.09742 -16.23416 -16.22679 -15.57087 -14.82599 -14.71685 -14.58619 -14.22730 -13.84967 -13.69371 -13.55230 -13.10993 -12.87127 -12.49748 -12.45852 -12.33847 -12.04580 -11.81156 -11.75563 -10.84475 -10.79263 -9.96327 -9.49150 -9.24224 -8.34455 -6.40159 -0.26380 0.29454 0.66807 0.82810 1.32264 1.37355 1.45348 1.60730 1.93172 2.30735 2.45919 2.99866 3.64602 3.77625 4.27303 4.34588 4.45167 4.60337 4.69111 4.80749 4.87814 4.92604 4.98523 5.43961 5.57800 6.22708 6.60203 6.61666 7.18689 7.34352 8.82726 Molecular weight = 259.02amu Principal moments of inertia in cm(-1) A = 0.029413 B = 0.006431 C = 0.005722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.725006 B = 4352.844568 C = 4891.904931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.599 5.599 3 C 0.224 3.776 4 C -0.537 4.537 5 H 0.025 0.975 6 C 0.011 3.989 7 N -0.946 5.946 8 Si 0.950 3.050 9 H -0.278 1.278 10 H -0.274 1.274 11 H -0.234 1.234 12 C 0.558 3.442 13 O -0.578 6.578 14 C -0.174 4.174 15 C -0.206 4.206 16 S 0.325 5.675 17 C -0.231 4.231 18 C -0.045 4.045 19 Cl -0.058 7.058 20 H 0.090 0.910 21 H 0.072 0.928 22 H 0.080 0.920 23 H 0.057 0.943 24 H 0.021 0.979 25 H 0.269 0.731 26 H 0.205 0.795 27 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.907 -15.909 9.457 22.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.329 5.329 3 C 0.102 3.898 4 C -0.576 4.576 5 H 0.043 0.957 6 C -0.187 4.187 7 N -0.586 5.586 8 Si 0.772 3.228 9 H -0.204 1.204 10 H -0.199 1.199 11 H -0.157 1.157 12 C 0.345 3.655 13 O -0.459 6.459 14 C -0.192 4.192 15 C -0.344 4.344 16 S 0.590 5.410 17 C -0.367 4.367 18 C -0.084 4.084 19 Cl -0.030 7.030 20 H 0.108 0.892 21 H 0.091 0.909 22 H 0.098 0.902 23 H 0.075 0.925 24 H 0.039 0.961 25 H 0.078 0.922 26 H 0.222 0.778 27 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -13.375 -16.569 9.755 23.422 hybrid contribution 2.356 1.712 -0.818 3.025 sum -11.019 -14.857 8.937 20.544 Atomic orbital electron populations 1.22219 0.77743 1.04079 1.02944 1.47796 1.08480 1.05561 1.71093 1.19396 0.92928 0.82011 0.95443 1.21538 1.36989 1.06776 0.92292 0.95665 1.25872 0.95180 0.98924 0.98724 1.70059 1.42642 1.24481 1.21377 0.85691 0.79562 0.77687 0.79850 1.20376 1.19887 1.15718 1.18143 0.86688 0.84072 0.76617 1.90739 1.15646 1.87798 1.51682 1.19866 0.98775 0.95005 1.05523 1.26185 0.98062 1.05659 1.04508 1.82610 1.18357 1.02870 1.37120 1.25818 0.99861 1.03097 1.07933 1.20846 0.92189 0.95204 1.00144 1.98382 1.35417 1.98541 1.70664 0.89182 0.90941 0.90193 0.92487 0.96128 0.92241 0.77778 0.78049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.07 9.00 127.77 1.15 3.22 15 2 N -0.60 -25.29 2.86 -855.36 -2.44 -27.73 15 3 C 0.22 11.17 4.24 85.64 0.36 11.53 15 4 C -0.54 -32.44 9.94 25.60 0.25 -32.19 15 5 H 0.02 1.71 8.06 -2.91 -0.02 1.69 15 6 C 0.01 0.66 5.47 84.65 0.46 1.12 15 7 N -0.95 -60.92 13.96 21.45 0.30 -60.62 15 8 Si 0.95 45.03 27.47 68.60 1.88 46.92 15 9 H -0.28 -13.36 7.11 99.48 0.71 -12.65 15 10 H -0.27 -12.39 7.11 99.48 0.71 -11.69 15 11 H -0.23 -9.83 6.54 99.48 0.65 -9.18 15 12 C 0.56 24.59 7.28 86.58 0.63 25.22 15 13 O -0.58 -31.01 15.76 -4.15 -0.07 -31.08 15 14 C -0.17 -5.70 5.23 -19.86 -0.10 -5.80 15 15 C -0.21 -4.30 8.58 67.31 0.58 -3.72 15 16 S 0.33 4.37 23.02 -56.49 -1.30 3.07 15 17 C -0.23 -4.68 11.00 66.64 0.73 -3.94 15 18 C -0.05 -1.41 6.47 22.68 0.15 -1.26 15 19 Cl -0.06 -2.15 28.10 -2.72 -0.08 -2.23 15 20 H 0.09 1.78 7.10 -2.39 -0.02 1.76 15 21 H 0.07 2.18 8.03 -2.38 -0.02 2.16 15 22 H 0.08 2.02 6.03 -2.39 -0.01 2.00 15 23 H 0.06 2.54 7.13 -2.39 -0.02 2.52 15 24 H 0.02 1.10 6.79 -2.39 -0.02 1.09 15 25 H 0.27 16.04 8.31 -92.71 -0.77 15.27 15 26 H 0.21 3.10 6.04 -2.91 -0.02 3.08 15 27 H 0.20 2.89 8.06 -2.91 -0.02 2.86 15 Total: -1.00 -82.24 264.68 3.66 -78.58 By element: Atomic # 1 Polarization: -2.23 SS G_CDS: 1.15 Total: -1.09 kcal Atomic # 6 Polarization: -10.03 SS G_CDS: 4.21 Total: -5.82 kcal Atomic # 7 Polarization: -86.21 SS G_CDS: -2.14 Total: -88.36 kcal Atomic # 8 Polarization: -31.01 SS G_CDS: -0.07 Total: -31.08 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 1.88 Total: 46.92 kcal Atomic # 16 Polarization: 4.37 SS G_CDS: -1.30 Total: 3.07 kcal Atomic # 17 Polarization: -2.15 SS G_CDS: -0.08 Total: -2.23 kcal Total: -82.24 3.66 -78.58 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601013550.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.605 kcal (2) G-P(sol) polarization free energy of solvation -82.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds