Wall clock time and date at job start Mon Mar 30 2020 08:01:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47472 * 2 1 4 4 C 1.50696 * 109.47113 * 120.00351 * 2 1 3 5 5 H 1.07997 * 120.00368 * 119.99502 * 4 2 1 6 6 C 1.37886 * 119.99859 * 299.99752 * 4 2 1 7 7 N 1.31511 * 120.00003 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99876 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47327 * 90.00032 * 8 6 4 10 10 H 1.48501 * 109.47120 * 210.00081 * 8 6 4 11 11 H 1.48501 * 109.47299 * 330.00019 * 8 6 4 12 12 N 1.46499 * 109.47062 * 240.00117 * 2 1 3 13 13 C 1.34776 * 120.00046 * 85.00181 * 12 2 1 14 14 O 1.21636 * 120.00041 * 0.02562 * 13 12 2 15 15 C 1.47162 * 120.00187 * 180.02562 * 13 12 2 16 16 C 1.36045 * 123.46217 * 359.97438 * 15 13 12 17 17 S 1.70447 * 110.83053 * 180.02562 * 16 15 13 18 18 C 1.75500 * 92.45503 * 359.97438 * 17 16 15 19 19 C 1.32840 * 110.58518 * 0.02562 * 18 17 16 20 20 Cl 1.73597 * 123.47262 * 180.02562 * 19 18 17 21 21 H 1.08997 * 109.47472 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.47155 * 300.00038 * 1 2 3 23 23 H 1.09005 * 109.47172 * 59.99462 * 1 2 3 24 24 H 0.96996 * 119.99917 * 179.97438 * 7 6 4 25 25 H 0.96997 * 120.00327 * 265.00079 * 12 2 1 26 26 H 1.07995 * 124.58955 * 359.75051 * 16 15 13 27 27 H 1.08005 * 124.71245 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6531 -1.5886 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 0.9436 0.8302 2.6034 8 14 2.3225 -1.1196 4.0079 9 1 3.6305 -0.5442 4.4119 10 1 1.3444 -0.9491 5.1123 11 1 2.4880 -2.5655 3.7121 12 7 2.0183 -0.6906 -1.1962 13 6 2.1471 -0.0182 -2.3571 14 8 1.8583 1.1621 -2.4116 15 6 2.6371 -0.7120 -3.5589 16 6 2.9803 -2.0283 -3.5776 17 16 3.5040 -2.4961 -5.1306 18 6 3.2581 -0.8849 -5.7814 19 6 2.8032 -0.0654 -4.8401 20 17 2.4442 1.6097 -5.1208 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 0.7090 1.1613 3.4844 25 1 2.2490 -1.6317 -1.1527 26 1 2.9320 -2.6867 -2.7229 27 1 3.4507 -0.5990 -6.8050 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601022409.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:01:45 Heat of formation + Delta-G solvation = -35.196249 kcal Electronic energy + Delta-G solvation = -14722.138803 eV Core-core repulsion = 12017.641740 eV Total energy + Delta-G solvation = -2704.497063 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 259.017 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.76995 -38.35722 -36.88273 -36.61985 -34.33572 -31.66088 -29.97862 -27.34953 -26.05287 -23.50870 -21.71993 -20.47197 -19.46035 -18.36155 -17.70699 -17.01754 -16.17224 -15.94367 -15.59504 -14.65842 -14.59142 -14.34813 -14.18098 -13.82119 -13.65952 -12.96365 -12.88126 -12.75785 -12.51220 -12.44763 -12.26626 -12.11435 -11.71868 -11.11737 -10.71724 -10.56845 -10.02913 -9.77092 -9.27135 -8.17367 -6.35243 -0.30623 0.31237 0.67118 0.76607 1.45386 1.46174 1.56820 1.65050 2.33862 2.41938 2.60661 3.13268 3.65704 4.08562 4.30173 4.43662 4.71715 4.78938 4.90524 4.94501 5.09165 5.43310 5.59867 5.68089 5.90436 6.08922 6.71822 6.94699 7.31703 7.53072 8.89223 Molecular weight = 259.02amu Principal moments of inertia in cm(-1) A = 0.030367 B = 0.005458 C = 0.004818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.824462 B = 5128.895977 C = 5809.980938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.272 3.728 3 H -0.001 1.001 4 C -0.546 4.546 5 H 0.075 0.925 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.974 3.026 9 H -0.279 1.279 10 H -0.284 1.284 11 H -0.257 1.257 12 N -0.698 5.698 13 C 0.551 3.449 14 O -0.579 6.579 15 C -0.178 4.178 16 C -0.205 4.205 17 S 0.324 5.676 18 C -0.233 4.233 19 C -0.039 4.039 20 Cl -0.047 7.047 21 H 0.041 0.959 22 H 0.067 0.933 23 H 0.009 0.991 24 H 0.265 0.735 25 H 0.403 0.597 26 H 0.197 0.803 27 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.971 -10.687 -16.201 20.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.169 3.831 3 H 0.016 0.984 4 C -0.585 4.585 5 H 0.093 0.907 6 C -0.186 4.186 7 N -0.556 5.556 8 Si 0.799 3.201 9 H -0.204 1.204 10 H -0.210 1.210 11 H -0.181 1.181 12 N -0.347 5.347 13 C 0.337 3.663 14 O -0.460 6.460 15 C -0.196 4.196 16 C -0.344 4.344 17 S 0.589 5.411 18 C -0.369 4.369 19 C -0.078 4.078 20 Cl -0.019 7.019 21 H 0.060 0.940 22 H 0.086 0.914 23 H 0.029 0.971 24 H 0.075 0.925 25 H 0.238 0.762 26 H 0.214 0.786 27 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 6.150 -10.944 -16.720 20.908 hybrid contribution -0.506 1.453 1.730 2.315 sum 5.644 -9.491 -14.990 18.618 Atomic orbital electron populations 1.21892 0.98269 0.99471 0.99511 1.18359 0.91122 0.91966 0.81654 0.98355 1.21528 1.32649 1.13635 0.90641 0.90671 1.25828 0.94832 0.95595 1.02390 1.70060 1.36957 1.23969 1.24629 0.85313 0.77697 0.79248 0.77877 1.20442 1.20996 1.18131 1.46108 1.65227 1.14014 1.09376 1.18142 0.78119 0.86430 0.83575 1.90765 1.52517 1.17172 1.85562 1.19997 1.10947 0.94757 0.93879 1.26036 1.03210 0.97961 1.07206 1.82652 1.58190 1.04891 0.95323 1.25835 1.08195 0.98192 1.04721 1.20815 1.05592 0.87930 0.93442 1.98372 1.93372 1.14422 1.95697 0.93993 0.91386 0.97139 0.92542 0.76190 0.78564 0.77852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.90 9.26 71.98 0.67 -6.23 15 2 C 0.27 14.46 2.56 44.24 0.11 14.57 15 3 H 0.00 -0.09 7.58 -2.39 -0.02 -0.11 15 4 C -0.55 -29.03 8.73 25.60 0.22 -28.81 15 5 H 0.08 3.68 7.74 -2.91 -0.02 3.66 15 6 C 0.01 0.73 5.30 84.66 0.45 1.18 15 7 N -0.92 -53.17 11.32 21.45 0.24 -52.93 15 8 Si 0.97 41.89 29.54 68.60 2.03 43.91 15 9 H -0.28 -11.87 7.11 99.48 0.71 -11.17 15 10 H -0.28 -12.11 7.11 99.48 0.71 -11.41 15 11 H -0.26 -10.31 7.11 99.48 0.71 -9.61 15 12 N -0.70 -30.04 5.04 -449.63 -2.27 -32.30 15 13 C 0.55 23.84 7.76 86.59 0.67 24.51 15 14 O -0.58 -30.02 14.71 -4.14 -0.06 -30.08 15 15 C -0.18 -5.71 5.98 -19.86 -0.12 -5.83 15 16 C -0.21 -4.50 10.38 67.31 0.70 -3.80 15 17 S 0.32 4.51 23.02 -56.49 -1.30 3.21 15 18 C -0.23 -4.48 11.00 66.64 0.73 -3.74 15 19 C -0.04 -1.16 6.49 22.68 0.15 -1.01 15 20 Cl -0.05 -1.58 27.24 -2.72 -0.07 -1.65 15 21 H 0.04 1.98 8.14 -2.39 -0.02 1.96 15 22 H 0.07 3.85 6.07 -2.39 -0.01 3.83 15 23 H 0.01 0.50 8.14 -2.38 -0.02 0.48 15 24 H 0.27 14.53 8.31 -92.71 -0.77 13.76 15 25 H 0.40 14.17 7.04 -92.71 -0.65 13.51 15 26 H 0.20 3.41 7.01 -2.91 -0.02 3.39 15 27 H 0.20 2.62 8.06 -2.91 -0.02 2.60 15 Total: -1.00 -70.81 267.74 2.71 -68.09 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: 0.56 Total: 10.90 kcal Atomic # 6 Polarization: -12.75 SS G_CDS: 3.58 Total: -9.16 kcal Atomic # 7 Polarization: -83.21 SS G_CDS: -2.02 Total: -85.23 kcal Atomic # 8 Polarization: -30.02 SS G_CDS: -0.06 Total: -30.08 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 2.03 Total: 43.91 kcal Atomic # 16 Polarization: 4.51 SS G_CDS: -1.30 Total: 3.21 kcal Atomic # 17 Polarization: -1.58 SS G_CDS: -0.07 Total: -1.65 kcal Total: -70.81 2.71 -68.09 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601022409.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.896 kcal (2) G-P(sol) polarization free energy of solvation -70.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds