Wall clock time and date at job start Mon Mar 30 2020 07:58:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86809 * 119.99835 * 2 1 4 4 H 1.48495 * 109.47265 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.46830 * 300.00008 * 3 2 1 6 6 H 1.48503 * 109.47108 * 59.99616 * 3 2 1 7 7 C 1.37876 * 120.00513 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00510 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99720 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47208 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.47198 * 180.02562 * 10 9 7 12 12 C 1.34777 * 119.99665 * 180.27868 * 11 10 9 13 13 O 1.21633 * 120.00238 * 359.72097 * 12 11 10 14 14 C 1.47160 * 119.99509 * 179.72415 * 12 11 10 15 15 C 1.36041 * 123.46794 * 0.02562 * 14 12 11 16 16 S 1.70443 * 110.82846 * 180.02562 * 15 14 12 17 17 C 1.75496 * 92.46089 * 0.02562 * 16 15 14 18 18 C 1.32851 * 110.57865 * 359.71123 * 17 16 15 19 19 Cl 1.73600 * 123.46940 * 180.28036 * 18 17 16 20 20 H 0.96999 * 120.00239 * 0.02562 * 1 2 3 21 21 H 1.08995 * 109.47322 * 60.00361 * 9 7 2 22 22 H 1.09006 * 109.46960 * 299.99918 * 9 7 2 23 23 H 1.09009 * 109.46730 * 59.99906 * 10 9 7 24 24 H 1.08998 * 109.46846 * 300.00451 * 10 9 7 25 25 H 0.97001 * 119.99790 * 359.97438 * 11 10 9 26 26 H 1.08003 * 124.58807 * 0.02562 * 15 14 12 27 27 H 1.08001 * 124.71357 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3466 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0005 11 7 1.5130 -4.9308 -0.0001 12 6 2.1870 -6.0979 0.0055 13 8 3.4033 -6.0979 0.0059 14 6 1.4512 -7.3724 0.0110 15 6 0.0933 -7.4547 0.0103 16 16 -0.4153 -9.0814 0.0184 17 6 1.2357 -9.6765 0.0236 18 6 2.0967 -8.6648 0.0130 19 17 3.8200 -8.8744 0.0072 20 1 -0.4850 0.8400 -0.0004 21 1 0.6249 -2.5571 -0.8897 22 1 0.6242 -2.5567 0.8904 23 1 2.8722 -3.6042 0.8906 24 1 2.8722 -3.6042 -0.8894 25 1 0.5430 -4.9308 0.0000 26 1 -0.5725 -6.6042 0.0054 27 1 1.5133 -10.7202 0.0292 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601427444.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:58:32 Heat of formation + Delta-G solvation = -21.375181 kcal Electronic energy + Delta-G solvation = -14216.025912 eV Core-core repulsion = 11512.128176 eV Total energy + Delta-G solvation = -2703.897736 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 259.017 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.58495 -37.32721 -35.90978 -34.86297 -32.88350 -30.57533 -29.08046 -25.51151 -24.33385 -21.64006 -20.82636 -19.23136 -18.26347 -17.10157 -16.34575 -15.06761 -15.04413 -14.82876 -14.41439 -13.79930 -13.51793 -13.14908 -13.04271 -12.80168 -12.30395 -11.68253 -11.52295 -11.21198 -11.06260 -10.80035 -10.63637 -10.36025 -9.79509 -9.48388 -9.20772 -9.18842 -8.65766 -8.50771 -8.33800 -6.11280 -4.13893 0.51373 1.05023 1.47096 1.70346 2.49668 3.27579 3.35128 3.40054 3.55245 3.59835 4.40089 4.45784 5.02507 5.11690 5.20946 5.26108 5.61269 5.71328 6.33255 6.33607 6.71854 6.86931 7.49349 7.58950 7.87120 7.95999 8.25832 8.60359 8.92293 9.51170 11.00411 Molecular weight = 259.02amu Principal moments of inertia in cm(-1) A = 0.035668 B = 0.004155 C = 0.003732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.826181 B = 6736.953893 C = 7501.323222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.520 4.520 8 H 0.060 0.940 9 C 0.012 3.988 10 C 0.123 3.877 11 N -0.715 5.715 12 C 0.562 3.438 13 O -0.527 6.527 14 C -0.141 4.141 15 C -0.207 4.207 16 S 0.219 5.781 17 C -0.241 4.241 18 C -0.006 4.006 19 Cl -0.019 7.019 20 H 0.261 0.739 21 H 0.022 0.978 22 H 0.022 0.978 23 H 0.059 0.941 24 H 0.059 0.941 25 H 0.395 0.605 26 H 0.180 0.820 27 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.687 -20.023 0.034 20.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.559 4.559 8 H 0.079 0.921 9 C -0.025 4.025 10 C 0.001 3.999 11 N -0.365 5.365 12 C 0.346 3.654 13 O -0.405 6.405 14 C -0.159 4.159 15 C -0.345 4.345 16 S 0.484 5.516 17 C -0.377 4.377 18 C -0.045 4.045 19 Cl 0.010 6.990 20 H 0.071 0.929 21 H 0.041 0.959 22 H 0.041 0.959 23 H 0.077 0.923 24 H 0.077 0.923 25 H 0.229 0.771 26 H 0.198 0.802 27 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -3.188 -20.588 0.033 20.833 hybrid contribution 1.356 1.692 -0.001 2.168 sum -1.832 -18.896 0.032 18.984 Atomic orbital electron populations 1.69959 1.06095 1.26785 1.50509 1.24997 0.94897 0.99439 0.94973 0.86455 0.80201 0.83301 0.77614 1.19551 1.20928 1.20932 1.21087 0.93325 0.90320 1.51184 0.92132 1.19337 0.94222 0.91149 0.97832 1.21765 0.96054 0.81037 1.01049 1.46194 1.10330 1.06331 1.73655 1.17466 0.87219 0.82862 0.77884 1.90822 1.12769 1.87267 1.49607 1.20210 0.92286 0.94206 1.09172 1.25697 0.98602 1.04106 1.06102 1.83044 1.04357 0.95146 1.69077 1.25395 0.96299 1.03292 1.12685 1.20692 0.87590 0.92019 1.04229 1.98397 1.07102 1.96982 1.96511 0.92895 0.95933 0.95929 0.92307 0.92304 0.77142 0.80233 0.80524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.98 13.29 55.43 0.74 -25.24 15 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 15 3 Si 0.90 21.35 29.54 -169.99 -5.02 16.33 15 4 H -0.27 -6.36 7.11 56.52 0.40 -5.96 15 5 H -0.28 -6.67 7.11 56.52 0.40 -6.27 15 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 15 7 C -0.52 -14.39 9.11 -34.44 -0.31 -14.71 15 8 H 0.06 1.65 7.74 -52.49 -0.41 1.24 15 9 C 0.01 0.30 5.09 -27.88 -0.14 0.15 15 10 C 0.12 2.62 5.61 -4.04 -0.02 2.60 15 11 N -0.72 -12.66 5.52 -61.46 -0.34 -13.00 15 12 C 0.56 10.07 7.79 -12.64 -0.10 9.97 15 13 O -0.53 -11.13 15.05 5.25 0.08 -11.05 15 14 C -0.14 -2.00 5.98 -104.61 -0.63 -2.63 15 15 C -0.21 -2.21 10.38 29.94 0.31 -1.90 15 16 S 0.22 1.76 23.02 -107.50 -2.47 -0.71 15 17 C -0.24 -2.33 11.00 28.88 0.32 -2.02 15 18 C -0.01 -0.08 6.49 -38.98 -0.25 -0.34 15 19 Cl -0.02 -0.27 27.24 -51.86 -1.41 -1.68 15 20 H 0.26 7.15 8.31 -40.82 -0.34 6.82 15 21 H 0.02 0.57 8.14 -51.93 -0.42 0.15 15 22 H 0.02 0.57 8.14 -51.93 -0.42 0.15 15 23 H 0.06 1.30 8.14 -51.92 -0.42 0.88 15 24 H 0.06 1.30 8.14 -51.93 -0.42 0.88 15 25 H 0.39 5.93 6.97 -40.82 -0.28 5.64 15 26 H 0.18 1.57 7.01 -52.48 -0.37 1.20 15 27 H 0.18 1.25 8.06 -52.49 -0.42 0.83 15 LS Contribution 272.56 15.07 4.11 4.11 Total: -1.00 -31.73 272.56 -7.56 -39.28 By element: Atomic # 1 Polarization: 1.60 SS G_CDS: -2.31 Total: -0.71 kcal Atomic # 6 Polarization: -6.40 SS G_CDS: -0.92 Total: -7.32 kcal Atomic # 7 Polarization: -38.64 SS G_CDS: 0.40 Total: -38.24 kcal Atomic # 8 Polarization: -11.13 SS G_CDS: 0.08 Total: -11.05 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: 1.76 SS G_CDS: -2.47 Total: -0.71 kcal Atomic # 17 Polarization: -0.27 SS G_CDS: -1.41 Total: -1.68 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -31.73 -7.56 -39.28 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601427444.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.908 kcal (2) G-P(sol) polarization free energy of solvation -31.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds