Wall clock time and date at job start Mon Mar 30 2020 07:58:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86809 * 119.99835 * 2 1 4 4 H 1.48495 * 109.47265 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.46830 * 300.00008 * 3 2 1 6 6 H 1.48503 * 109.47108 * 59.99616 * 3 2 1 7 7 C 1.37876 * 120.00513 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00510 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99720 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47208 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.47198 * 180.02562 * 10 9 7 12 12 C 1.34777 * 119.99665 * 180.27868 * 11 10 9 13 13 O 1.21633 * 120.00238 * 359.72097 * 12 11 10 14 14 C 1.47160 * 119.99509 * 179.72415 * 12 11 10 15 15 C 1.36041 * 123.46794 * 0.02562 * 14 12 11 16 16 S 1.70443 * 110.82846 * 180.02562 * 15 14 12 17 17 C 1.75496 * 92.46089 * 0.02562 * 16 15 14 18 18 C 1.32851 * 110.57865 * 359.71123 * 17 16 15 19 19 Cl 1.73600 * 123.46940 * 180.28036 * 18 17 16 20 20 H 0.96999 * 120.00239 * 0.02562 * 1 2 3 21 21 H 1.08995 * 109.47322 * 60.00361 * 9 7 2 22 22 H 1.09006 * 109.46960 * 299.99918 * 9 7 2 23 23 H 1.09009 * 109.46730 * 59.99906 * 10 9 7 24 24 H 1.08998 * 109.46846 * 300.00451 * 10 9 7 25 25 H 0.97001 * 119.99790 * 359.97438 * 11 10 9 26 26 H 1.08003 * 124.58807 * 0.02562 * 15 14 12 27 27 H 1.08001 * 124.71357 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3466 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0005 11 7 1.5130 -4.9308 -0.0001 12 6 2.1870 -6.0979 0.0055 13 8 3.4033 -6.0979 0.0059 14 6 1.4512 -7.3724 0.0110 15 6 0.0933 -7.4547 0.0103 16 16 -0.4153 -9.0814 0.0184 17 6 1.2357 -9.6765 0.0236 18 6 2.0967 -8.6648 0.0130 19 17 3.8200 -8.8744 0.0072 20 1 -0.4850 0.8400 -0.0004 21 1 0.6249 -2.5571 -0.8897 22 1 0.6242 -2.5567 0.8904 23 1 2.8722 -3.6042 0.8906 24 1 2.8722 -3.6042 -0.8894 25 1 0.5430 -4.9308 0.0000 26 1 -0.5725 -6.6042 0.0054 27 1 1.5133 -10.7202 0.0292 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601427444.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:58:31 Heat of formation + Delta-G solvation = -42.549124 kcal Electronic energy + Delta-G solvation = -14216.944083 eV Core-core repulsion = 11512.128176 eV Total energy + Delta-G solvation = -2704.815907 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 259.017 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.88827 -38.37932 -36.89547 -36.57283 -34.83350 -32.03499 -30.44744 -27.08600 -25.72272 -23.21138 -22.29767 -20.38298 -19.23267 -18.59433 -18.01492 -16.53112 -16.52240 -16.44503 -15.84852 -15.15351 -14.56331 -14.44792 -14.24373 -14.22911 -13.82739 -13.21441 -12.95988 -12.58347 -12.51489 -12.48470 -12.25395 -11.75973 -11.66490 -11.43859 -10.82351 -10.61553 -10.14111 -9.96466 -9.33561 -8.25112 -6.35088 -0.35582 0.27832 0.64191 0.69778 1.40380 1.41646 1.54627 1.61516 2.21115 2.26141 2.44346 3.09820 3.60734 3.92872 4.25610 4.38240 4.48368 4.48988 4.74534 4.84210 4.88640 5.25762 5.47857 5.57228 5.77772 6.15428 6.58603 6.77914 7.23133 7.34196 8.86924 Molecular weight = 259.02amu Principal moments of inertia in cm(-1) A = 0.035668 B = 0.004155 C = 0.003732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.826181 B = 6736.953893 C = 7501.323222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.008 3.992 3 Si 0.964 3.036 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.546 4.546 8 H 0.057 0.943 9 C 0.024 3.976 10 C 0.143 3.857 11 N -0.711 5.711 12 C 0.561 3.439 13 O -0.569 6.569 14 C -0.180 4.180 15 C -0.205 4.205 16 S 0.325 5.675 17 C -0.234 4.234 18 C -0.038 4.038 19 Cl -0.044 7.044 20 H 0.266 0.734 21 H 0.010 0.990 22 H 0.010 0.990 23 H 0.047 0.953 24 H 0.047 0.953 25 H 0.408 0.592 26 H 0.197 0.803 27 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.206 -21.187 0.041 21.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.191 4.191 3 Si 0.789 3.211 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.585 4.585 8 H 0.076 0.924 9 C -0.014 4.014 10 C 0.019 3.981 11 N -0.362 5.362 12 C 0.347 3.653 13 O -0.449 6.449 14 C -0.198 4.198 15 C -0.344 4.344 16 S 0.590 5.410 17 C -0.370 4.370 18 C -0.076 4.076 19 Cl -0.016 7.016 20 H 0.075 0.925 21 H 0.029 0.971 22 H 0.029 0.971 23 H 0.065 0.935 24 H 0.065 0.935 25 H 0.245 0.755 26 H 0.214 0.786 27 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -4.740 -21.780 0.041 22.289 hybrid contribution 1.648 1.923 -0.002 2.533 sum -3.091 -19.857 0.038 20.096 Atomic orbital electron populations 1.70051 1.07447 1.27945 1.51048 1.25845 0.95809 1.03000 0.94412 0.85410 0.78941 0.78851 0.77934 1.19114 1.20163 1.20174 1.21488 0.93571 0.91948 1.51467 0.92429 1.19134 0.94185 0.91583 0.96479 1.21245 0.95083 0.81850 0.99908 1.45957 1.10891 1.05320 1.74064 1.18027 0.86999 0.83881 0.76390 1.90787 1.14679 1.87978 1.51467 1.19879 0.93454 0.92588 1.13898 1.26077 0.97604 1.07198 1.03525 1.82813 1.01399 0.91422 1.65331 1.25857 0.97241 1.04038 1.09828 1.20790 0.86881 0.92606 1.07344 1.98378 1.09353 1.96990 1.96837 0.92508 0.97130 0.97127 0.93494 0.93487 0.75548 0.78556 0.77864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.89 13.29 21.45 0.28 -53.61 15 2 C 0.01 0.46 5.46 84.65 0.46 0.92 15 3 Si 0.96 43.73 29.54 68.60 2.03 45.76 15 4 H -0.27 -11.83 7.11 99.48 0.71 -11.12 15 5 H -0.28 -12.15 7.11 99.48 0.71 -11.44 15 6 H -0.28 -12.15 7.11 99.48 0.71 -11.45 15 7 C -0.55 -30.65 9.11 25.60 0.23 -30.42 15 8 H 0.06 3.19 7.74 -2.91 -0.02 3.16 15 9 C 0.02 1.19 5.09 29.85 0.15 1.34 15 10 C 0.14 6.26 5.61 86.38 0.48 6.75 15 11 N -0.71 -25.56 5.52 -466.61 -2.58 -28.14 15 12 C 0.56 20.46 7.79 86.59 0.67 21.13 15 13 O -0.57 -24.96 15.05 -4.14 -0.06 -25.02 15 14 C -0.18 -4.97 5.98 -19.86 -0.12 -5.09 15 15 C -0.21 -3.84 10.38 67.31 0.70 -3.14 15 16 S 0.32 3.81 23.02 -56.49 -1.30 2.51 15 17 C -0.23 -3.81 11.00 66.64 0.73 -3.08 15 18 C -0.04 -0.97 6.49 22.68 0.15 -0.82 15 19 Cl -0.04 -1.29 27.24 -2.72 -0.07 -1.36 15 20 H 0.27 14.51 8.31 -92.71 -0.77 13.73 15 21 H 0.01 0.54 8.14 -2.39 -0.02 0.52 15 22 H 0.01 0.54 8.14 -2.38 -0.02 0.53 15 23 H 0.05 2.15 8.14 -2.38 -0.02 2.14 15 24 H 0.05 2.16 8.14 -2.39 -0.02 2.14 15 25 H 0.41 12.16 6.97 -92.71 -0.65 11.51 15 26 H 0.20 2.86 7.01 -2.91 -0.02 2.84 15 27 H 0.20 2.11 8.06 -2.91 -0.02 2.09 15 Total: -1.00 -69.93 272.56 2.32 -67.61 By element: Atomic # 1 Polarization: 4.09 SS G_CDS: 0.56 Total: 4.65 kcal Atomic # 6 Polarization: -15.87 SS G_CDS: 3.47 Total: -12.41 kcal Atomic # 7 Polarization: -79.45 SS G_CDS: -2.29 Total: -81.74 kcal Atomic # 8 Polarization: -24.96 SS G_CDS: -0.06 Total: -25.02 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Atomic # 16 Polarization: 3.81 SS G_CDS: -1.30 Total: 2.51 kcal Atomic # 17 Polarization: -1.29 SS G_CDS: -0.07 Total: -1.36 kcal Total: -69.93 2.32 -67.61 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601427444.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.061 kcal (2) G-P(sol) polarization free energy of solvation -69.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds