Wall clock time and date at job start Mon Mar 30 2020 07:43:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42896 * 114.00319 * 2 1 4 4 C 1.52998 * 109.47130 * 205.07710 * 3 2 1 5 5 C 1.53005 * 109.47485 * 66.18127 * 4 3 2 6 6 C 1.53007 * 109.47889 * 298.03943 * 5 4 3 7 7 C 1.53097 * 109.47708 * 58.05994 * 5 4 3 8 8 C 1.53168 * 109.16257 * 62.38684 * 7 5 4 9 9 C 1.53182 * 109.10970 * 56.93811 * 8 7 5 10 10 C 1.53100 * 109.15502 * 303.14980 * 9 8 7 11 11 H 1.08998 * 109.40725 * 297.49037 * 10 9 8 12 12 C 1.50703 * 109.49136 * 177.50905 * 10 9 8 13 13 H 1.07996 * 119.99990 * 3.45792 * 12 10 9 14 14 C 1.37872 * 119.99804 * 183.45543 * 12 10 9 15 15 N 1.31521 * 120.00523 * 354.36601 * 14 12 10 16 16 Si 1.86805 * 119.99858 * 174.36393 * 14 12 10 17 17 H 1.48500 * 109.46859 * 60.00312 * 16 14 12 18 18 H 1.48501 * 109.47142 * 179.97438 * 16 14 12 19 19 H 1.48492 * 109.47242 * 300.00046 * 16 14 12 20 20 O 1.42898 * 109.49076 * 57.47480 * 10 9 8 21 21 O 1.42898 * 109.47664 * 85.07594 * 3 2 1 22 22 C 1.42901 * 113.99736 * 293.29045 * 21 3 2 23 23 H 1.08991 * 109.47429 * 186.14291 * 1 2 3 24 24 H 1.09000 * 109.46884 * 306.14829 * 1 2 3 25 25 H 1.09000 * 109.46871 * 66.14070 * 1 2 3 26 26 H 1.08995 * 109.47014 * 325.07130 * 3 2 1 27 27 H 1.09008 * 109.47330 * 306.18409 * 4 3 2 28 28 H 1.09004 * 109.47615 * 186.18473 * 4 3 2 29 29 H 1.08998 * 109.46722 * 189.45408 * 6 5 4 30 30 H 1.08994 * 109.46684 * 309.45192 * 6 5 4 31 31 H 1.08997 * 109.46905 * 69.45089 * 6 5 4 32 32 H 1.09006 * 109.52130 * 302.48032 * 7 5 4 33 33 H 1.08999 * 109.57316 * 182.32973 * 7 5 4 34 34 H 1.09010 * 109.54438 * 176.84502 * 8 7 5 35 35 H 1.09004 * 109.54900 * 297.02368 * 8 7 5 36 36 H 1.09002 * 109.52228 * 62.96643 * 9 8 7 37 37 H 1.08998 * 109.52180 * 183.15403 * 9 8 7 38 38 H 0.96996 * 120.00603 * 185.00595 * 15 14 12 39 39 H 1.09001 * 109.47484 * 73.07303 * 22 21 3 40 40 H 1.09004 * 109.47118 * 193.07082 * 22 21 3 41 41 H 1.09002 * 109.47222 * 313.07203 * 22 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.4113 1.2398 -0.6114 5 6 3.3047 0.8722 -2.0928 6 6 2.6674 -0.5121 -2.2304 7 6 2.4378 1.9073 -2.8145 8 6 3.1127 3.2794 -2.7237 9 6 4.5216 3.1855 -3.3175 10 6 5.3072 2.0995 -2.5777 11 1 5.4096 2.3775 -1.5288 12 6 6.6743 1.9584 -3.1960 13 1 6.9759 2.6182 -3.9960 14 6 7.5401 0.9870 -2.7402 15 7 7.2180 0.2570 -1.6946 16 14 9.1706 0.7075 -3.6079 17 1 9.9753 1.9548 -3.5631 18 1 9.9126 -0.3843 -2.9276 19 1 8.9205 0.3302 -5.0221 20 8 4.6095 0.8562 -2.6752 21 8 2.0984 1.7877 1.3422 22 6 0.8315 2.0313 1.9567 23 1 -0.3634 -1.0217 0.1100 24 1 -0.3633 0.6062 0.8298 25 1 -0.3633 0.4157 -0.9398 26 1 1.3884 1.9800 -0.5884 27 1 3.9998 0.4841 -0.0910 28 1 3.8970 2.2106 -0.5120 29 1 2.7435 -0.8457 -3.2652 30 1 3.1873 -1.2173 -1.5820 31 1 1.6177 -0.4590 -1.9419 32 1 1.4559 1.9524 -2.3433 33 1 2.3267 1.6245 -3.8613 34 1 2.5291 4.0105 -3.2833 35 1 3.1767 3.5860 -1.6796 36 1 4.4549 2.9288 -4.3748 37 1 5.0286 4.1439 -3.2057 38 1 7.8562 -0.3757 -1.3296 39 1 0.3549 1.0806 2.1959 40 1 0.9759 2.6057 2.8718 41 1 0.1972 2.5933 1.2711 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686239703.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:54 Heat of formation + Delta-G solvation = -141.186889 kcal Electronic energy + Delta-G solvation = -21513.608014 eV Core-core repulsion = 18393.978011 eV Total energy + Delta-G solvation = -3119.630003 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 258.166 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.77993 -38.20024 -35.83735 -33.52529 -32.48357 -31.77272 -29.49794 -27.40974 -26.60928 -25.92132 -25.03203 -22.75423 -22.09401 -20.54397 -18.04668 -17.38049 -17.16981 -16.50125 -15.42920 -14.84921 -14.67895 -14.39072 -14.24421 -14.06411 -13.65155 -13.48944 -13.18916 -12.76124 -12.46601 -12.28445 -11.94247 -11.44840 -11.31244 -11.14125 -11.05184 -10.94114 -10.82092 -10.63053 -10.39341 -10.31796 -10.18854 -9.73485 -9.68262 -9.60883 -9.43522 -8.78814 -8.37404 -7.78135 -5.92785 -4.05078 3.37042 3.42118 3.44555 3.74199 3.94863 4.47647 4.84046 5.04031 5.10530 5.16816 5.27333 5.33159 5.42905 5.46096 5.49226 5.56127 5.63818 5.70916 5.78407 5.85933 5.98616 6.12842 6.27676 6.39031 6.45230 6.53842 6.60820 6.65500 6.84440 6.88174 6.93205 7.04071 7.11668 7.23963 7.28520 7.60570 7.96443 8.35486 8.83535 9.20781 9.64341 11.13708 Molecular weight = 258.17amu Principal moments of inertia in cm(-1) A = 0.028232 B = 0.006239 C = 0.005996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.531693 B = 4486.552806 C = 4668.408714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.380 6.380 3 C 0.245 3.755 4 C -0.123 4.123 5 C 0.119 3.881 6 C -0.129 4.129 7 C -0.143 4.143 8 C -0.124 4.124 9 C -0.144 4.144 10 C 0.216 3.784 11 H 0.018 0.982 12 C -0.531 4.531 13 H 0.062 0.938 14 C 0.081 3.919 15 N -0.857 5.857 16 Si 0.890 3.110 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.276 1.276 20 O -0.340 6.340 21 O -0.392 6.392 22 C 0.023 3.977 23 H 0.085 0.915 24 H 0.047 0.953 25 H 0.041 0.959 26 H 0.057 0.943 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.047 0.953 30 H 0.059 0.941 31 H 0.066 0.934 32 H 0.050 0.950 33 H 0.065 0.935 34 H 0.048 0.952 35 H 0.056 0.944 36 H 0.056 0.944 37 H 0.056 0.944 38 H 0.261 0.739 39 H 0.047 0.953 40 H 0.082 0.918 41 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.475 2.427 3.559 15.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 O -0.301 6.301 3 C 0.151 3.849 4 C -0.160 4.160 5 C 0.078 3.922 6 C -0.186 4.186 7 C -0.180 4.180 8 C -0.161 4.161 9 C -0.182 4.182 10 C 0.160 3.840 11 H 0.036 0.964 12 C -0.568 4.568 13 H 0.080 0.920 14 C -0.125 4.125 15 N -0.493 5.493 16 Si 0.717 3.283 17 H -0.203 1.203 18 H -0.212 1.212 19 H -0.201 1.201 20 O -0.259 6.259 21 O -0.312 6.312 22 C -0.073 4.073 23 H 0.103 0.897 24 H 0.066 0.934 25 H 0.060 0.940 26 H 0.074 0.926 27 H 0.107 0.893 28 H 0.108 0.892 29 H 0.067 0.933 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.068 0.932 33 H 0.084 0.916 34 H 0.067 0.933 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.071 0.929 39 H 0.066 0.934 40 H 0.101 0.899 41 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -14.069 1.935 3.639 14.661 hybrid contribution 0.184 0.284 -0.332 0.474 sum -13.885 2.219 3.307 14.445 Atomic orbital electron populations 1.23107 0.82402 1.03072 1.00174 1.88200 1.18711 1.29825 1.93326 1.23694 0.96688 0.82169 0.82350 1.22134 0.92092 1.04813 0.97004 1.21044 0.87562 0.94235 0.89391 1.21830 0.99885 0.95734 1.01113 1.22272 0.97944 0.96528 1.01306 1.21677 0.97750 0.96097 1.00574 1.22264 0.94270 1.00961 1.00684 1.19702 0.89420 0.80207 0.94670 0.96428 1.20957 0.96754 1.17730 1.21390 0.91981 1.25030 0.97931 0.94908 0.94658 1.70003 1.34539 1.23312 1.21422 0.86722 0.83585 0.77791 0.80200 1.20287 1.21241 1.20112 1.88423 1.23794 1.36472 1.77220 1.88106 1.28738 1.84299 1.30076 1.22927 0.86423 0.99812 0.98123 0.89653 0.93434 0.94006 0.92602 0.89308 0.89231 0.93348 0.92178 0.91582 0.93164 0.91605 0.93320 0.92567 0.92542 0.92549 0.92934 0.93436 0.89923 0.94340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.10 10.02 101.05 1.01 1.11 16 2 O -0.38 -5.99 7.48 -59.04 -0.44 -6.44 16 3 C 0.25 4.05 2.59 37.16 0.10 4.15 16 4 C -0.12 -2.48 3.93 -26.73 -0.10 -2.58 16 5 C 0.12 2.43 0.88 -90.56 -0.08 2.35 16 6 C -0.13 -2.42 7.71 37.16 0.29 -2.13 16 7 C -0.14 -2.50 4.59 -26.59 -0.12 -2.63 16 8 C -0.12 -2.19 5.71 -26.55 -0.15 -2.34 16 9 C -0.14 -3.07 5.37 -26.59 -0.14 -3.21 16 10 C 0.22 5.55 2.19 -27.83 -0.06 5.49 16 11 H 0.02 0.50 6.30 -51.93 -0.33 0.17 16 12 C -0.53 -15.05 8.81 -34.44 -0.30 -15.35 16 13 H 0.06 1.71 7.75 -52.49 -0.41 1.30 16 14 C 0.08 2.32 5.35 -17.82 -0.10 2.22 16 15 N -0.86 -25.46 12.83 55.43 0.71 -24.75 16 16 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 17 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 18 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 O -0.34 -8.79 9.21 -35.23 -0.32 -9.12 16 21 O -0.39 -6.50 10.62 -59.04 -0.63 -7.13 16 22 C 0.02 0.27 9.51 101.05 0.96 1.23 16 23 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 24 H 0.05 0.46 4.49 -51.93 -0.23 0.23 16 25 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.84 5.62 -51.93 -0.29 0.55 16 27 H 0.09 2.04 8.14 -51.92 -0.42 1.61 16 28 H 0.09 1.90 4.97 -51.93 -0.26 1.64 16 29 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.06 1.21 8.12 -51.93 -0.42 0.79 16 31 H 0.07 1.07 5.57 -51.93 -0.29 0.78 16 32 H 0.05 0.75 6.13 -51.93 -0.32 0.43 16 33 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.05 0.75 8.14 -51.92 -0.42 0.32 16 35 H 0.06 0.98 6.67 -51.93 -0.35 0.64 16 36 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 38 H 0.26 7.38 8.32 -40.82 -0.34 7.04 16 39 H 0.05 0.51 6.20 -51.93 -0.32 0.18 16 40 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 41 H 0.04 0.38 7.81 -51.93 -0.41 -0.03 16 LS Contribution 308.89 15.07 4.65 4.65 Total: -1.00 -31.32 308.89 -6.32 -37.64 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -6.56 Total: 0.20 kcal Atomic # 6 Polarization: -12.98 SS G_CDS: 1.29 Total: -11.69 kcal Atomic # 7 Polarization: -25.46 SS G_CDS: 0.71 Total: -24.75 kcal Atomic # 8 Polarization: -21.29 SS G_CDS: -1.39 Total: -22.68 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -31.32 -6.32 -37.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686239703.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.551 kcal (2) G-P(sol) polarization free energy of solvation -31.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds