Wall clock time and date at job start Mon Mar 30 2020 07:43:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42896 * 114.00319 * 2 1 4 4 C 1.52998 * 109.47130 * 205.07710 * 3 2 1 5 5 C 1.53005 * 109.47485 * 66.18127 * 4 3 2 6 6 C 1.53007 * 109.47889 * 298.03943 * 5 4 3 7 7 C 1.53097 * 109.47708 * 58.05994 * 5 4 3 8 8 C 1.53168 * 109.16257 * 62.38684 * 7 5 4 9 9 C 1.53182 * 109.10970 * 56.93811 * 8 7 5 10 10 C 1.53100 * 109.15502 * 303.14980 * 9 8 7 11 11 H 1.08998 * 109.40725 * 297.49037 * 10 9 8 12 12 C 1.50703 * 109.49136 * 177.50905 * 10 9 8 13 13 H 1.07996 * 119.99990 * 3.45792 * 12 10 9 14 14 C 1.37872 * 119.99804 * 183.45543 * 12 10 9 15 15 N 1.31521 * 120.00523 * 354.36601 * 14 12 10 16 16 Si 1.86805 * 119.99858 * 174.36393 * 14 12 10 17 17 H 1.48500 * 109.46859 * 60.00312 * 16 14 12 18 18 H 1.48501 * 109.47142 * 179.97438 * 16 14 12 19 19 H 1.48492 * 109.47242 * 300.00046 * 16 14 12 20 20 O 1.42898 * 109.49076 * 57.47480 * 10 9 8 21 21 O 1.42898 * 109.47664 * 85.07594 * 3 2 1 22 22 C 1.42901 * 113.99736 * 293.29045 * 21 3 2 23 23 H 1.08991 * 109.47429 * 186.14291 * 1 2 3 24 24 H 1.09000 * 109.46884 * 306.14829 * 1 2 3 25 25 H 1.09000 * 109.46871 * 66.14070 * 1 2 3 26 26 H 1.08995 * 109.47014 * 325.07130 * 3 2 1 27 27 H 1.09008 * 109.47330 * 306.18409 * 4 3 2 28 28 H 1.09004 * 109.47615 * 186.18473 * 4 3 2 29 29 H 1.08998 * 109.46722 * 189.45408 * 6 5 4 30 30 H 1.08994 * 109.46684 * 309.45192 * 6 5 4 31 31 H 1.08997 * 109.46905 * 69.45089 * 6 5 4 32 32 H 1.09006 * 109.52130 * 302.48032 * 7 5 4 33 33 H 1.08999 * 109.57316 * 182.32973 * 7 5 4 34 34 H 1.09010 * 109.54438 * 176.84502 * 8 7 5 35 35 H 1.09004 * 109.54900 * 297.02368 * 8 7 5 36 36 H 1.09002 * 109.52228 * 62.96643 * 9 8 7 37 37 H 1.08998 * 109.52180 * 183.15403 * 9 8 7 38 38 H 0.96996 * 120.00603 * 185.00595 * 15 14 12 39 39 H 1.09001 * 109.47484 * 73.07303 * 22 21 3 40 40 H 1.09004 * 109.47118 * 193.07082 * 22 21 3 41 41 H 1.09002 * 109.47222 * 313.07203 * 22 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.4113 1.2398 -0.6114 5 6 3.3047 0.8722 -2.0928 6 6 2.6674 -0.5121 -2.2304 7 6 2.4378 1.9073 -2.8145 8 6 3.1127 3.2794 -2.7237 9 6 4.5216 3.1855 -3.3175 10 6 5.3072 2.0995 -2.5777 11 1 5.4096 2.3775 -1.5288 12 6 6.6743 1.9584 -3.1960 13 1 6.9759 2.6182 -3.9960 14 6 7.5401 0.9870 -2.7402 15 7 7.2180 0.2570 -1.6946 16 14 9.1706 0.7075 -3.6079 17 1 9.9753 1.9548 -3.5631 18 1 9.9126 -0.3843 -2.9276 19 1 8.9205 0.3302 -5.0221 20 8 4.6095 0.8562 -2.6752 21 8 2.0984 1.7877 1.3422 22 6 0.8315 2.0313 1.9567 23 1 -0.3634 -1.0217 0.1100 24 1 -0.3633 0.6062 0.8298 25 1 -0.3633 0.4157 -0.9398 26 1 1.3884 1.9800 -0.5884 27 1 3.9998 0.4841 -0.0910 28 1 3.8970 2.2106 -0.5120 29 1 2.7435 -0.8457 -3.2652 30 1 3.1873 -1.2173 -1.5820 31 1 1.6177 -0.4590 -1.9419 32 1 1.4559 1.9524 -2.3433 33 1 2.3267 1.6245 -3.8613 34 1 2.5291 4.0105 -3.2833 35 1 3.1767 3.5860 -1.6796 36 1 4.4549 2.9288 -4.3748 37 1 5.0286 4.1439 -3.2057 38 1 7.8562 -0.3757 -1.3296 39 1 0.3549 1.0806 2.1959 40 1 0.9759 2.6057 2.8718 41 1 0.1972 2.5933 1.2711 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686239703.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:53 Heat of formation + Delta-G solvation = -162.099719 kcal Electronic energy + Delta-G solvation = -21514.514863 eV Core-core repulsion = 18393.978011 eV Total energy + Delta-G solvation = -3120.536851 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 258.166 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.20223 -39.63931 -36.98364 -35.38267 -34.14536 -33.69768 -30.88275 -29.14728 -27.78194 -26.88976 -26.81420 -24.10688 -23.85742 -22.25177 -19.62213 -18.68007 -18.55152 -18.28410 -16.73545 -16.65504 -16.38754 -15.90751 -15.59352 -15.27145 -14.95944 -14.67348 -14.58241 -14.49157 -14.11564 -13.57248 -13.46082 -12.93415 -12.86143 -12.73235 -12.66536 -12.56663 -12.33846 -12.25866 -12.14866 -11.85949 -11.70207 -11.60068 -11.16520 -10.85544 -10.78021 -10.65126 -10.38213 -9.61960 -8.09167 -6.29495 1.40778 1.44692 1.51665 2.42563 2.57856 2.85837 3.08299 3.57645 3.71331 3.98778 4.00138 4.15123 4.17044 4.28067 4.32112 4.42677 4.45053 4.49324 4.53090 4.55397 4.74925 4.80251 4.85847 4.89365 4.92704 4.96164 5.06630 5.11966 5.15972 5.24249 5.32897 5.45602 5.53984 5.64016 5.84141 6.11215 6.16804 6.27506 6.71222 7.28784 7.46947 8.96981 Molecular weight = 258.17amu Principal moments of inertia in cm(-1) A = 0.028232 B = 0.006239 C = 0.005996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.531693 B = 4486.552806 C = 4668.408714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.002 4.002 2 O -0.405 6.405 3 C 0.258 3.742 4 C -0.115 4.115 5 C 0.106 3.894 6 C -0.119 4.119 7 C -0.135 4.135 8 C -0.118 4.118 9 C -0.138 4.138 10 C 0.215 3.785 11 H -0.015 1.015 12 C -0.556 4.556 13 H 0.063 0.937 14 C 0.027 3.973 15 N -0.894 5.894 16 Si 0.958 3.042 17 H -0.265 1.265 18 H -0.284 1.284 19 H -0.271 1.271 20 O -0.377 6.377 21 O -0.424 6.424 22 C 0.015 3.985 23 H 0.100 0.900 24 H 0.064 0.936 25 H 0.059 0.941 26 H 0.083 0.917 27 H 0.041 0.959 28 H 0.070 0.930 29 H 0.046 0.954 30 H 0.032 0.968 31 H 0.099 0.901 32 H 0.087 0.913 33 H 0.069 0.931 34 H 0.086 0.914 35 H 0.056 0.944 36 H 0.052 0.948 37 H 0.060 0.940 38 H 0.259 0.741 39 H 0.057 0.943 40 H 0.097 0.903 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.857 3.346 2.871 17.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 O -0.326 6.326 3 C 0.164 3.836 4 C -0.153 4.153 5 C 0.066 3.934 6 C -0.176 4.176 7 C -0.173 4.173 8 C -0.155 4.155 9 C -0.176 4.176 10 C 0.159 3.841 11 H 0.003 0.997 12 C -0.594 4.594 13 H 0.081 0.919 14 C -0.176 4.176 15 N -0.531 5.531 16 Si 0.783 3.217 17 H -0.190 1.190 18 H -0.210 1.210 19 H -0.196 1.196 20 O -0.297 6.297 21 O -0.346 6.346 22 C -0.081 4.081 23 H 0.118 0.882 24 H 0.083 0.917 25 H 0.078 0.922 26 H 0.100 0.900 27 H 0.060 0.940 28 H 0.088 0.912 29 H 0.065 0.935 30 H 0.051 0.949 31 H 0.117 0.883 32 H 0.105 0.895 33 H 0.088 0.912 34 H 0.104 0.896 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.079 0.921 38 H 0.068 0.932 39 H 0.075 0.925 40 H 0.115 0.885 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -16.473 2.867 2.951 16.979 hybrid contribution 0.849 -0.021 -0.036 0.850 sum -15.624 2.846 2.914 16.146 Atomic orbital electron populations 1.23425 0.79705 1.04741 1.01897 1.88153 1.21622 1.29363 1.93502 1.23300 0.94386 0.83124 0.82810 1.21900 0.94378 1.02001 0.97013 1.21387 0.86024 0.96368 0.89628 1.21794 1.01260 0.94192 1.00367 1.22209 0.98717 0.94998 1.01331 1.21651 0.95687 0.97264 1.00905 1.22122 0.96304 0.99289 0.99915 1.19521 0.89716 0.81683 0.93189 0.99714 1.21448 0.98737 1.17837 1.21345 0.91860 1.25894 1.01828 0.94644 0.95207 1.70164 1.35825 1.24096 1.23034 0.85641 0.79188 0.78042 0.78877 1.18955 1.20962 1.19632 1.88290 1.26643 1.36722 1.78059 1.88054 1.31853 1.84488 1.30182 1.23217 0.84885 1.00988 0.98974 0.88175 0.91750 0.92201 0.90030 0.93960 0.91153 0.93519 0.94851 0.88278 0.89458 0.91247 0.89587 0.92502 0.92933 0.92138 0.93164 0.92470 0.88480 0.91982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.05 10.02 113.37 1.14 1.09 16 2 O -0.41 -12.06 7.48 -126.21 -0.94 -13.01 16 3 C 0.26 8.17 2.59 71.98 0.19 8.36 16 4 C -0.12 -4.79 3.93 30.60 0.12 -4.67 16 5 C 0.11 4.37 0.88 -10.76 -0.01 4.36 16 6 C -0.12 -4.46 7.71 71.98 0.55 -3.90 16 7 C -0.14 -4.38 4.59 30.68 0.14 -4.24 16 8 C -0.12 -3.90 5.71 30.71 0.18 -3.72 16 9 C -0.14 -5.86 5.37 30.69 0.16 -5.69 16 10 C 0.21 11.46 2.19 29.88 0.07 11.53 16 11 H -0.01 -0.85 6.30 -2.39 -0.02 -0.87 16 12 C -0.56 -32.51 8.81 25.60 0.23 -32.28 16 13 H 0.06 3.55 7.75 -2.91 -0.02 3.53 16 14 C 0.03 1.58 5.35 84.65 0.45 2.03 16 15 N -0.89 -55.61 12.83 21.45 0.28 -55.34 16 16 Si 0.96 45.46 29.54 68.60 2.03 47.49 16 17 H -0.26 -11.92 7.11 99.48 0.71 -11.22 16 18 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 19 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 20 O -0.38 -20.22 9.21 -148.98 -1.37 -21.59 16 21 O -0.42 -13.66 10.62 -126.21 -1.34 -15.00 16 22 C 0.01 0.30 9.51 113.37 1.08 1.38 16 23 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 24 H 0.06 0.98 4.49 -2.39 -0.01 0.97 16 25 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.08 2.14 5.62 -2.39 -0.01 2.12 16 27 H 0.04 2.09 8.14 -2.38 -0.02 2.07 16 28 H 0.07 3.13 4.97 -2.39 -0.01 3.12 16 29 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.03 1.38 8.12 -2.39 -0.02 1.36 16 31 H 0.10 2.99 5.57 -2.39 -0.01 2.98 16 32 H 0.09 2.20 6.13 -2.38 -0.01 2.19 16 33 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 34 H 0.09 2.26 8.14 -2.38 -0.02 2.24 16 35 H 0.06 1.88 6.67 -2.38 -0.02 1.87 16 36 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 37 H 0.06 2.44 8.14 -2.39 -0.02 2.43 16 38 H 0.26 15.35 8.32 -92.71 -0.77 14.57 16 39 H 0.06 1.05 6.20 -2.39 -0.01 1.03 16 40 H 0.10 1.67 8.14 -2.38 -0.02 1.65 16 41 H 0.06 0.97 7.81 -2.39 -0.02 0.95 16 Total: -1.00 -71.97 308.89 3.94 -68.03 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: 1.00 Total: 15.19 kcal Atomic # 6 Polarization: -30.06 SS G_CDS: 4.29 Total: -25.77 kcal Atomic # 7 Polarization: -55.61 SS G_CDS: 0.28 Total: -55.34 kcal Atomic # 8 Polarization: -45.94 SS G_CDS: -3.66 Total: -49.60 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Total: -71.97 3.94 -68.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686239703.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.072 kcal (2) G-P(sol) polarization free energy of solvation -71.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds