Wall clock time and date at job start Mon Mar 30 2020 07:33:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46498 * 109.46766 * 172.54532 * 3 2 1 5 5 C 1.39854 * 120.00312 * 90.00073 * 4 3 2 6 6 C 1.39605 * 119.84003 * 354.12280 * 5 4 3 7 7 C 1.38050 * 120.55377 * 179.97438 * 6 5 4 8 8 C 1.38740 * 120.21636 * 0.02686 * 7 6 5 9 9 N 1.38867 * 120.16297 * 179.97438 * 8 7 6 10 10 C 1.41557 * 119.67699 * 359.97438 * 8 7 6 11 11 C 1.41030 * 120.27004 * 180.02562 * 10 8 7 12 12 H 1.08000 * 119.99704 * 31.00132 * 11 10 8 13 13 C 1.39885 * 120.00051 * 210.99313 * 11 10 8 14 14 N 1.30896 * 120.00131 * 11.30558 * 13 11 10 15 15 Si 1.86801 * 119.99651 * 191.30551 * 13 11 10 16 16 H 1.48494 * 109.47394 * 0.02562 * 15 13 11 17 17 H 1.48508 * 109.47066 * 120.00101 * 15 13 11 18 18 H 1.48504 * 109.46796 * 239.99749 * 15 13 11 19 19 C 1.38009 * 119.84015 * 173.85514 * 5 4 3 20 20 C 1.46505 * 120.00006 * 269.99534 * 4 3 2 21 21 C 1.52995 * 109.47095 * 124.36174 * 20 4 3 22 22 C 1.53002 * 109.46988 * 244.36776 * 20 4 3 23 23 H 4.40637 * 5.51475 * 179.97438 * 4 1 2 24 24 H 1.09002 * 109.46829 * 292.53730 * 3 2 1 25 25 H 1.08994 * 109.47768 * 52.54179 * 3 2 1 26 26 H 1.08003 * 119.72106 * 359.97438 * 6 5 4 27 27 H 1.07993 * 119.89262 * 180.02562 * 7 6 5 28 28 H 0.97009 * 119.99761 * 5.24790 * 9 8 7 29 29 H 0.96994 * 120.00453 * 185.24356 * 9 8 7 30 30 H 0.97002 * 120.00280 * 184.98374 * 14 13 11 31 31 H 1.08000 * 120.11270 * 359.97438 * 19 5 4 32 32 H 1.09002 * 109.46659 * 4.35935 * 20 4 3 33 33 H 1.09000 * 109.47185 * 64.23134 * 21 20 4 34 34 H 1.09002 * 109.47057 * 184.23163 * 21 20 4 35 35 H 1.08996 * 109.47126 * 304.23295 * 21 20 4 36 36 H 1.08993 * 109.47750 * 69.44699 * 22 20 4 37 37 H 1.09003 * 109.46576 * 189.44646 * 22 20 4 38 38 H 1.09004 * 109.46942 * 309.44022 * 22 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1336 1.3704 -0.1792 5 6 3.3663 2.1814 0.9362 6 6 3.0177 1.7280 2.2096 7 6 3.2413 2.5161 3.3208 8 6 3.8162 3.7712 3.1824 9 7 4.0401 4.5633 4.3008 10 6 4.1733 4.2404 1.8955 11 6 4.7589 5.5140 1.7404 12 1 5.3808 5.9214 2.5238 13 6 4.5343 6.2495 0.5719 14 7 3.6146 5.8655 -0.2766 15 14 5.5472 7.7797 0.2224 16 1 6.5136 7.9970 1.3287 17 1 6.2870 7.6030 -1.0530 18 1 4.6463 8.9553 0.1134 19 6 3.9445 3.4239 0.7731 20 6 3.3776 1.8907 -1.5268 21 6 2.5743 3.1769 -1.7302 22 6 4.8688 2.1884 -1.6963 23 1 -1.0503 -0.0004 -0.0001 24 1 3.0094 -0.3931 0.9492 25 1 3.0097 -0.6241 -0.8157 26 1 2.5694 0.7524 2.3265 27 1 2.9679 2.1545 4.3010 28 1 3.8656 4.2108 5.1876 29 1 4.3710 5.4689 4.1954 30 1 3.5075 6.3323 -1.1201 31 1 4.2172 3.7694 -0.2131 32 1 3.0691 1.1492 -2.2639 33 1 2.9344 3.9426 -1.0431 34 1 2.6964 3.5231 -2.7565 35 1 1.5198 2.9812 -1.5357 36 1 5.4260 1.2519 -1.7189 37 1 5.0276 2.7283 -2.6299 38 1 5.2149 2.7972 -0.8611 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688836813.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:33:08 Heat of formation + Delta-G solvation = 83.019289 kcal Electronic energy + Delta-G solvation = -19604.946662 eV Core-core repulsion = 16834.640639 eV Total energy + Delta-G solvation = -2770.306022 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.35961 -38.08373 -35.48276 -34.64029 -34.21545 -32.04148 -31.04125 -29.10982 -27.83553 -26.71753 -26.21094 -22.89819 -22.34656 -20.81025 -19.33365 -18.41201 -17.58501 -17.48572 -16.64455 -16.36632 -16.02341 -15.51245 -15.22488 -14.62284 -14.18787 -13.85418 -13.83012 -13.70777 -13.35463 -13.19494 -12.96924 -12.83687 -12.66139 -12.56921 -12.15451 -12.07967 -12.00794 -11.50516 -11.26745 -11.02812 -10.95639 -10.88648 -10.51311 -9.28712 -8.99311 -8.38583 -7.22592 -5.96797 1.15901 1.45826 1.53468 1.57012 1.63968 1.79839 1.99466 2.32935 2.87540 2.98726 3.65485 3.79426 4.00125 4.12401 4.38659 4.41350 4.53959 4.64898 4.69096 4.89804 4.91590 4.97156 5.05754 5.14217 5.20303 5.28775 5.41753 5.44784 5.60645 5.67637 5.86517 6.02953 6.12640 6.21503 6.39926 6.64430 6.78539 6.92766 7.12025 7.14003 7.20589 7.50525 7.68548 8.61005 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.019208 B = 0.008271 C = 0.006437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.386721 B = 3384.632973 C = 4348.913634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.222 4.222 3 C 0.231 3.769 4 N -0.630 5.630 5 C 0.168 3.832 6 C -0.250 4.250 7 C -0.165 4.165 8 C 0.074 3.926 9 N -0.880 5.880 10 C 0.051 3.949 11 C -0.490 4.490 12 H 0.067 0.933 13 C 0.039 3.961 14 N -0.833 5.833 15 Si 0.967 3.033 16 H -0.264 1.264 17 H -0.270 1.270 18 H -0.277 1.277 19 C -0.216 4.216 20 C 0.164 3.836 21 C -0.200 4.200 22 C -0.172 4.172 23 H 0.239 0.761 24 H 0.095 0.905 25 H 0.113 0.887 26 H 0.103 0.897 27 H 0.106 0.894 28 H 0.389 0.611 29 H 0.390 0.610 30 H 0.278 0.722 31 H 0.145 0.855 32 H 0.089 0.911 33 H 0.112 0.888 34 H 0.058 0.942 35 H 0.025 0.975 36 H 0.063 0.937 37 H 0.065 0.935 38 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.572 -6.728 -2.471 7.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.224 4.224 3 C 0.108 3.892 4 N -0.345 5.345 5 C 0.070 3.930 6 C -0.273 4.273 7 C -0.190 4.190 8 C -0.028 4.028 9 N -0.423 5.423 10 C 0.046 3.954 11 C -0.522 4.522 12 H 0.085 0.915 13 C -0.172 4.172 14 N -0.461 5.461 15 Si 0.790 3.210 16 H -0.188 1.188 17 H -0.195 1.195 18 H -0.203 1.203 19 C -0.239 4.239 20 C 0.060 3.940 21 C -0.258 4.258 22 C -0.230 4.230 23 H 0.256 0.744 24 H 0.112 0.888 25 H 0.130 0.870 26 H 0.121 0.879 27 H 0.124 0.876 28 H 0.216 0.784 29 H 0.218 0.782 30 H 0.089 0.911 31 H 0.162 0.838 32 H 0.107 0.893 33 H 0.130 0.870 34 H 0.077 0.923 35 H 0.044 0.956 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.709 -6.733 -2.838 7.342 hybrid contribution -0.086 1.019 0.215 1.045 sum -0.795 -5.715 -2.623 6.338 Atomic orbital electron populations 1.25640 0.96874 0.99438 1.01238 1.24709 0.96430 1.00947 1.00352 1.18359 0.82714 0.84368 1.03754 1.46454 1.73031 1.11882 1.03090 1.17612 0.97581 0.91290 0.86482 1.20005 1.14754 1.01236 0.91321 1.20020 1.06757 0.94617 0.97565 1.18159 1.02989 0.92939 0.88740 1.41712 1.79298 1.16538 1.04761 1.17482 0.94154 0.93737 0.90071 1.19298 1.28514 1.01066 1.03278 0.91473 1.26354 0.94373 1.00977 0.95546 1.69755 1.27111 1.40642 1.08631 0.85390 0.78743 0.78056 0.78808 1.18819 1.19505 1.20287 1.21343 1.09314 0.92865 1.00402 1.20741 0.94574 0.95411 0.83258 1.22786 0.98838 1.01083 1.03115 1.22411 0.96365 1.02055 1.02187 0.74423 0.88758 0.86967 0.87938 0.87638 0.78390 0.78210 0.91134 0.83800 0.89334 0.87013 0.92319 0.95572 0.91778 0.91566 0.92684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -6.24 19.25 74.32 1.43 -4.81 16 2 C -0.22 -7.21 13.56 31.12 0.42 -6.79 16 3 C 0.23 7.16 5.48 84.57 0.46 7.62 16 4 N -0.63 -23.96 2.49 -683.84 -1.70 -25.66 16 5 C 0.17 7.73 6.13 38.14 0.23 7.97 16 6 C -0.25 -11.21 9.15 22.56 0.21 -11.00 16 7 C -0.17 -7.51 9.87 22.35 0.22 -7.29 16 8 C 0.07 3.57 6.79 38.97 0.26 3.84 16 9 N -0.88 -35.81 8.97 -50.31 -0.45 -36.26 16 10 C 0.05 2.69 5.53 -21.18 -0.12 2.57 16 11 C -0.49 -25.64 8.33 23.35 0.19 -25.45 16 12 H 0.07 3.41 6.94 -2.91 -0.02 3.39 16 13 C 0.04 1.94 5.22 85.23 0.45 2.38 16 14 N -0.83 -42.30 9.39 21.82 0.20 -42.09 16 15 Si 0.97 38.68 29.58 68.60 2.03 40.71 16 16 H -0.26 -10.41 7.11 99.48 0.71 -9.71 16 17 H -0.27 -10.46 7.11 99.48 0.71 -9.75 16 18 H -0.28 -10.94 7.11 99.48 0.71 -10.24 16 19 C -0.22 -10.93 5.48 22.81 0.13 -10.81 16 20 C 0.16 5.77 3.27 44.99 0.15 5.92 16 21 C -0.20 -7.99 8.91 71.98 0.64 -7.35 16 22 C -0.17 -5.89 9.01 71.98 0.65 -5.24 16 23 H 0.24 5.00 7.80 -4.40 -0.03 4.97 16 24 H 0.09 2.85 6.45 -2.39 -0.02 2.83 16 25 H 0.11 2.73 7.96 -2.39 -0.02 2.71 16 26 H 0.10 4.17 6.19 -2.91 -0.02 4.15 16 27 H 0.11 4.21 8.06 -2.91 -0.02 4.18 16 28 H 0.39 13.16 8.84 -92.70 -0.82 12.34 16 29 H 0.39 15.77 7.20 -92.71 -0.67 15.10 16 30 H 0.28 13.07 8.30 -92.71 -0.77 12.30 16 31 H 0.14 7.24 2.16 -2.91 -0.01 7.24 16 32 H 0.09 2.61 7.83 -2.39 -0.02 2.60 16 33 H 0.11 5.19 2.80 -2.39 -0.01 5.18 16 34 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.06 1.90 8.14 -2.39 -0.02 1.89 16 37 H 0.07 2.04 8.12 -2.39 -0.02 2.02 16 38 H 0.05 2.30 4.80 -2.38 -0.01 2.29 16 Total: -1.00 -60.20 305.60 5.02 -55.18 By element: Atomic # 1 Polarization: 56.94 SS G_CDS: -0.39 Total: 56.55 kcal Atomic # 6 Polarization: -53.75 SS G_CDS: 5.33 Total: -48.43 kcal Atomic # 7 Polarization: -102.06 SS G_CDS: -1.95 Total: -104.01 kcal Atomic # 14 Polarization: 38.68 SS G_CDS: 2.03 Total: 40.71 kcal Total: -60.20 5.02 -55.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688836813.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.201 kcal (2) G-P(sol) polarization free energy of solvation -60.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.181 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds