Wall clock time and date at job start Mon Mar 30 2020 07:03:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30900 * 1 3 3 Si 1.86800 * 120.00156 * 2 1 4 4 H 1.48493 * 109.47175 * 239.99631 * 3 2 1 5 5 H 1.48503 * 109.46824 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47317 * 119.99342 * 3 2 1 7 7 C 1.39889 * 120.00322 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00432 * 163.93817 * 7 2 1 9 9 C 1.41030 * 119.99856 * 343.94269 * 7 2 1 10 10 C 1.40670 * 120.26512 * 333.78322 * 9 7 2 11 11 C 1.38002 * 119.76788 * 179.72779 * 10 9 7 12 12 N 1.39854 * 119.83995 * 180.25274 * 11 10 9 13 13 C 1.46501 * 120.00102 * 179.97438 * 12 11 10 14 14 C 1.52999 * 119.29563 * 250.51787 * 13 12 11 15 15 C 1.52992 * 60.37882 * 248.69515 * 14 13 12 16 16 H 1.09006 * 119.75456 * 111.12987 * 15 14 13 17 17 C 1.54266 * 118.20105 * 266.38562 * 15 14 13 18 18 C 1.54884 * 104.19504 * 87.78914 * 17 15 14 19 19 C 1.54266 * 117.41398 * 46.17568 * 13 12 11 20 20 C 1.39603 * 120.32384 * 0.22969 * 11 10 9 21 21 C 1.38055 * 120.54913 * 0.02562 * 20 11 10 22 22 C 1.38744 * 120.21877 * 359.97438 * 21 20 11 23 23 N 1.38861 * 120.16312 * 180.02562 * 22 21 20 24 24 H 0.96995 * 119.99899 * 355.62965 * 1 2 3 25 25 H 1.07998 * 120.11721 * 359.97438 * 10 9 7 26 26 H 0.97003 * 120.00014 * 359.97438 * 12 11 10 27 27 H 1.09001 * 117.46584 * 356.29155 * 14 13 12 28 28 H 1.09003 * 117.45811 * 141.09187 * 14 13 12 29 29 H 1.09002 * 110.48553 * 206.47129 * 17 15 14 30 30 H 1.09005 * 110.48467 * 328.97851 * 17 15 14 31 31 H 1.09003 * 110.75701 * 80.37655 * 18 17 15 32 32 H 1.09012 * 110.75665 * 203.55806 * 18 17 15 33 33 H 1.08997 * 110.48478 * 235.04933 * 19 13 12 34 34 H 1.09000 * 110.48173 * 357.69149 * 19 13 12 35 35 H 1.08001 * 119.72477 * 180.02562 * 20 11 10 36 36 H 1.08002 * 119.89152 * 180.02562 * 21 20 11 37 37 H 0.97008 * 119.99766 * 354.04902 * 23 22 21 38 38 H 0.96999 * 120.00463 * 174.05420 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 3.0968 1.6963 -1.2124 5 1 1.2780 2.7464 -0.0006 6 1 3.0967 1.6965 1.2126 7 6 2.0085 -1.2114 0.0005 8 1 3.0569 -1.2298 -0.2582 9 6 1.3447 -2.4088 0.3389 10 6 0.2140 -2.3807 1.1753 11 6 -0.4311 -3.5579 1.4952 12 7 -1.5586 -3.5311 2.3223 13 6 -2.2464 -4.7787 2.6638 14 6 -3.6296 -5.0572 2.0720 15 6 -3.4893 -4.7847 3.5709 16 1 -3.8878 -3.8618 3.9926 17 6 -3.3363 -5.9911 4.5200 18 6 -1.8105 -6.2548 4.5563 19 6 -1.3746 -5.9732 3.1029 20 6 0.0360 -4.7755 0.9970 21 6 1.1475 -4.8191 0.1794 22 6 1.8134 -3.6492 -0.1568 23 7 2.9310 -3.6943 -0.9796 24 1 -0.4850 0.8376 0.0640 25 1 -0.1504 -1.4406 1.5624 26 1 -1.8851 -2.6864 2.6699 27 1 -4.0807 -4.2767 1.4592 28 1 -3.8484 -6.0801 1.7653 29 1 -3.7043 -5.7424 5.5155 30 1 -3.8659 -6.8576 4.1240 31 1 -1.3153 -5.5645 5.2393 32 1 -1.6035 -7.2878 4.8361 33 1 -1.5815 -6.8450 2.4822 34 1 -0.3175 -5.7118 3.0550 35 1 -0.4766 -5.6910 1.2532 36 1 1.4995 -5.7668 -0.2005 37 1 3.2995 -4.5497 -1.2507 38 1 3.3434 -2.8705 -1.2833 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693206132.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:14 Heat of formation + Delta-G solvation = 50.651864 kcal Electronic energy + Delta-G solvation = -19010.201032 eV Core-core repulsion = 16238.491453 eV Total energy + Delta-G solvation = -2771.709579 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.60389 -37.57811 -34.34164 -33.43088 -31.86957 -30.47441 -29.46449 -27.80162 -25.90823 -24.73982 -22.45630 -21.14490 -20.32137 -19.75217 -18.88756 -17.02705 -16.33503 -15.43368 -15.37595 -15.00075 -14.63472 -14.52187 -13.52751 -13.08340 -12.88623 -12.55454 -12.37838 -12.17040 -11.91682 -11.60335 -11.46933 -11.14618 -10.99922 -10.81913 -10.73838 -10.71880 -10.39994 -10.24833 -9.99942 -9.68198 -9.22810 -9.17514 -9.00548 -7.66295 -7.20619 -6.59973 -5.50854 -4.04549 2.93993 3.14032 3.16910 3.33068 3.46522 3.93043 4.05789 4.25576 4.69056 4.83484 4.93047 5.09806 5.35950 5.45000 5.56311 5.62733 5.77049 5.84679 5.94999 5.97384 5.98265 6.04560 6.20959 6.39108 6.43373 6.46682 6.57571 6.73207 7.15131 7.19212 7.33775 7.49163 7.74166 7.91612 8.01579 8.14192 8.48301 8.77483 8.91653 8.96160 9.02186 9.27919 9.36385 10.39821 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.025357 B = 0.005700 C = 0.004959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.957597 B = 4911.464359 C = 5644.734659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.802 5.802 2 C 0.077 3.923 3 Si 0.899 3.101 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.267 1.267 7 C -0.465 4.465 8 H 0.070 0.930 9 C 0.095 3.905 10 C -0.199 4.199 11 C 0.178 3.822 12 N -0.724 5.724 13 C 0.131 3.869 14 C -0.169 4.169 15 C -0.182 4.182 16 H 0.104 0.896 17 C -0.091 4.091 18 C -0.124 4.124 19 C -0.096 4.096 20 C -0.256 4.256 21 C -0.153 4.153 22 C 0.084 3.916 23 N -0.889 5.889 24 H 0.275 0.725 25 H 0.116 0.884 26 H 0.390 0.610 27 H 0.095 0.905 28 H 0.088 0.912 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.092 0.908 35 H 0.099 0.901 36 H 0.084 0.916 37 H 0.374 0.626 38 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.030 -7.461 5.712 10.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C -0.138 4.138 3 Si 0.725 3.275 4 H -0.193 1.193 5 H -0.207 1.207 6 H -0.192 1.192 7 C -0.496 4.496 8 H 0.088 0.912 9 C 0.090 3.910 10 C -0.223 4.223 11 C 0.081 3.919 12 N -0.356 5.356 13 C 0.041 3.959 14 C -0.209 4.209 15 C -0.201 4.201 16 H 0.122 0.878 17 C -0.129 4.129 18 C -0.162 4.162 19 C -0.134 4.134 20 C -0.280 4.280 21 C -0.177 4.177 22 C -0.017 4.017 23 N -0.432 5.432 24 H 0.086 0.914 25 H 0.134 0.866 26 H 0.224 0.776 27 H 0.114 0.886 28 H 0.107 0.893 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.111 0.889 35 H 0.116 0.884 36 H 0.102 0.898 37 H 0.199 0.801 38 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -4.292 -7.423 5.694 10.293 hybrid contribution 0.324 1.251 -0.192 1.306 sum -3.968 -6.172 5.501 9.171 Atomic orbital electron populations 1.69873 1.07209 1.28681 1.37119 1.25722 0.94624 1.00592 0.92865 0.86528 0.80149 0.81247 0.79615 1.19344 1.20661 1.19217 1.19105 0.96724 0.91282 1.42476 0.91173 1.16954 0.92715 0.90345 0.90992 1.20470 1.01379 0.95048 1.05425 1.17457 0.87467 0.94213 0.92796 1.43601 1.31152 1.04631 1.56211 1.21075 0.85496 0.88601 1.00770 1.23576 1.01354 1.02197 0.93756 1.23571 1.04690 1.00192 0.91695 0.87751 1.21911 0.96391 0.96350 0.98246 1.22608 0.95170 1.00913 0.97472 1.22202 1.01084 0.95372 0.94759 1.19980 1.02568 0.95146 1.10265 1.19757 0.98845 0.94699 1.04444 1.17873 0.92035 0.94012 0.97782 1.41805 1.33939 1.08295 1.59147 0.91427 0.86623 0.77648 0.88625 0.89341 0.91700 0.91643 0.91495 0.91555 0.91479 0.88931 0.88360 0.89807 0.80147 0.78365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.21 10.96 55.55 0.61 -20.60 16 2 C 0.08 1.98 5.16 -17.33 -0.09 1.89 16 3 Si 0.90 19.11 29.59 -169.99 -5.03 14.08 16 4 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 5 H -0.28 -5.89 7.11 56.52 0.40 -5.48 16 6 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 7 C -0.46 -12.30 8.45 -37.91 -0.32 -12.62 16 8 H 0.07 1.77 6.78 -52.49 -0.36 1.41 16 9 C 0.10 2.54 5.57 -106.66 -0.59 1.95 16 10 C -0.20 -5.20 8.49 -38.75 -0.33 -5.53 16 11 C 0.18 4.18 6.46 -83.78 -0.54 3.64 16 12 N -0.72 -14.36 5.84 -44.96 -0.26 -14.62 16 13 C 0.13 2.16 2.76 -130.70 -0.36 1.80 16 14 C -0.17 -2.50 10.06 -26.74 -0.27 -2.77 16 15 C -0.18 -2.49 6.94 -89.51 -0.62 -3.11 16 16 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 17 C -0.09 -1.05 6.63 -25.08 -0.17 -1.22 16 18 C -0.12 -1.53 6.88 -25.04 -0.17 -1.70 16 19 C -0.10 -1.45 4.44 -25.37 -0.11 -1.56 16 20 C -0.26 -5.80 8.00 -39.14 -0.31 -6.11 16 21 C -0.15 -3.52 9.87 -39.46 -0.39 -3.91 16 22 C 0.08 2.05 6.79 -83.23 -0.56 1.48 16 23 N -0.89 -18.35 8.97 32.75 0.29 -18.06 16 24 H 0.27 6.73 8.30 -40.82 -0.34 6.39 16 25 H 0.12 3.14 6.22 -52.49 -0.33 2.82 16 26 H 0.39 7.47 8.83 -40.82 -0.36 7.11 16 27 H 0.10 1.47 8.14 -51.93 -0.42 1.05 16 28 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.07 0.70 8.14 -51.92 -0.42 0.27 16 33 H 0.07 0.95 7.90 -51.93 -0.41 0.54 16 34 H 0.09 1.61 6.18 -51.93 -0.32 1.29 16 35 H 0.10 2.01 4.73 -52.49 -0.25 1.76 16 36 H 0.08 1.72 8.06 -52.49 -0.42 1.30 16 37 H 0.37 6.52 8.84 -40.82 -0.36 6.15 16 38 H 0.39 7.89 7.11 -40.82 -0.29 7.60 16 LS Contribution 303.12 15.07 4.57 4.57 Total: -1.00 -28.16 303.12 -9.86 -38.01 By element: Atomic # 1 Polarization: 29.58 SS G_CDS: -5.19 Total: 24.39 kcal Atomic # 6 Polarization: -22.93 SS G_CDS: -4.84 Total: -27.77 kcal Atomic # 7 Polarization: -53.92 SS G_CDS: 0.64 Total: -53.28 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -5.03 Total: 14.08 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -28.16 -9.86 -38.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693206132.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.664 kcal (2) G-P(sol) polarization free energy of solvation -28.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds