Wall clock time and date at job start Mon Mar 30 2020 07:03:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30900 * 1 3 3 Si 1.86800 * 120.00156 * 2 1 4 4 H 1.48493 * 109.47175 * 239.99631 * 3 2 1 5 5 H 1.48503 * 109.46824 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47317 * 119.99342 * 3 2 1 7 7 C 1.39889 * 120.00322 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00432 * 163.93817 * 7 2 1 9 9 C 1.41030 * 119.99856 * 343.94269 * 7 2 1 10 10 C 1.40670 * 120.26512 * 333.78322 * 9 7 2 11 11 C 1.38002 * 119.76788 * 179.72779 * 10 9 7 12 12 N 1.39854 * 119.83995 * 180.25274 * 11 10 9 13 13 C 1.46501 * 120.00102 * 179.97438 * 12 11 10 14 14 C 1.52999 * 119.29563 * 250.51787 * 13 12 11 15 15 C 1.52992 * 60.37882 * 248.69515 * 14 13 12 16 16 H 1.09006 * 119.75456 * 111.12987 * 15 14 13 17 17 C 1.54266 * 118.20105 * 266.38562 * 15 14 13 18 18 C 1.54884 * 104.19504 * 87.78914 * 17 15 14 19 19 C 1.54266 * 117.41398 * 46.17568 * 13 12 11 20 20 C 1.39603 * 120.32384 * 0.22969 * 11 10 9 21 21 C 1.38055 * 120.54913 * 0.02562 * 20 11 10 22 22 C 1.38744 * 120.21877 * 359.97438 * 21 20 11 23 23 N 1.38861 * 120.16312 * 180.02562 * 22 21 20 24 24 H 0.96995 * 119.99899 * 355.62965 * 1 2 3 25 25 H 1.07998 * 120.11721 * 359.97438 * 10 9 7 26 26 H 0.97003 * 120.00014 * 359.97438 * 12 11 10 27 27 H 1.09001 * 117.46584 * 356.29155 * 14 13 12 28 28 H 1.09003 * 117.45811 * 141.09187 * 14 13 12 29 29 H 1.09002 * 110.48553 * 206.47129 * 17 15 14 30 30 H 1.09005 * 110.48467 * 328.97851 * 17 15 14 31 31 H 1.09003 * 110.75701 * 80.37655 * 18 17 15 32 32 H 1.09012 * 110.75665 * 203.55806 * 18 17 15 33 33 H 1.08997 * 110.48478 * 235.04933 * 19 13 12 34 34 H 1.09000 * 110.48173 * 357.69149 * 19 13 12 35 35 H 1.08001 * 119.72477 * 180.02562 * 20 11 10 36 36 H 1.08002 * 119.89152 * 180.02562 * 21 20 11 37 37 H 0.97008 * 119.99766 * 354.04902 * 23 22 21 38 38 H 0.96999 * 120.00463 * 174.05420 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 3.0968 1.6963 -1.2124 5 1 1.2780 2.7464 -0.0006 6 1 3.0967 1.6965 1.2126 7 6 2.0085 -1.2114 0.0005 8 1 3.0569 -1.2298 -0.2582 9 6 1.3447 -2.4088 0.3389 10 6 0.2140 -2.3807 1.1753 11 6 -0.4311 -3.5579 1.4952 12 7 -1.5586 -3.5311 2.3223 13 6 -2.2464 -4.7787 2.6638 14 6 -3.6296 -5.0572 2.0720 15 6 -3.4893 -4.7847 3.5709 16 1 -3.8878 -3.8618 3.9926 17 6 -3.3363 -5.9911 4.5200 18 6 -1.8105 -6.2548 4.5563 19 6 -1.3746 -5.9732 3.1029 20 6 0.0360 -4.7755 0.9970 21 6 1.1475 -4.8191 0.1794 22 6 1.8134 -3.6492 -0.1568 23 7 2.9310 -3.6943 -0.9796 24 1 -0.4850 0.8376 0.0640 25 1 -0.1504 -1.4406 1.5624 26 1 -1.8851 -2.6864 2.6699 27 1 -4.0807 -4.2767 1.4592 28 1 -3.8484 -6.0801 1.7653 29 1 -3.7043 -5.7424 5.5155 30 1 -3.8659 -6.8576 4.1240 31 1 -1.3153 -5.5645 5.2393 32 1 -1.6035 -7.2878 4.8361 33 1 -1.5815 -6.8450 2.4822 34 1 -0.3175 -5.7118 3.0550 35 1 -0.4766 -5.6910 1.2532 36 1 1.4995 -5.7668 -0.2005 37 1 3.2995 -4.5497 -1.2507 38 1 3.3434 -2.8705 -1.2833 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693206132.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:10 Heat of formation + Delta-G solvation = 34.245143 kcal Electronic energy + Delta-G solvation = -19010.912481 eV Core-core repulsion = 16238.491453 eV Total energy + Delta-G solvation = -2772.421028 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -40.85782 -39.32008 -35.99237 -35.30807 -33.21626 -31.90466 -31.31817 -29.08714 -27.58922 -26.56777 -23.65114 -22.88476 -21.83648 -21.06138 -20.30282 -18.80434 -17.91610 -17.14331 -17.02996 -16.56737 -16.22659 -15.80399 -14.79254 -14.58677 -14.24031 -14.14387 -13.89633 -13.71187 -13.62906 -13.18723 -13.02963 -12.81190 -12.69613 -12.19606 -12.02835 -11.89004 -11.78961 -11.71592 -11.60927 -11.14851 -10.94535 -10.90116 -10.47807 -9.26846 -9.13044 -8.49996 -7.27494 -5.99582 1.13860 1.40206 1.49358 1.52602 1.65733 2.27501 2.73348 2.79222 2.95678 3.60886 3.78275 3.83766 3.95453 4.02553 4.31742 4.43796 4.55228 4.63259 4.71750 4.77558 4.90204 4.92819 4.97108 5.06373 5.22415 5.24591 5.29396 5.36019 5.37661 5.45876 5.51526 5.66529 5.92427 6.08812 6.18354 6.30971 6.58072 6.98323 7.07776 7.14783 7.26029 7.48388 7.68379 8.51436 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.025357 B = 0.005700 C = 0.004959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.957597 B = 4911.464359 C = 5644.734659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.837 5.837 2 C 0.034 3.966 3 Si 0.972 3.028 4 H -0.260 1.260 5 H -0.276 1.276 6 H -0.266 1.266 7 C -0.493 4.493 8 H 0.073 0.927 9 C 0.059 3.941 10 C -0.225 4.225 11 C 0.176 3.824 12 N -0.725 5.725 13 C 0.092 3.908 14 C -0.167 4.167 15 C -0.161 4.161 16 H 0.107 0.893 17 C -0.085 4.085 18 C -0.118 4.118 19 C -0.095 4.095 20 C -0.254 4.254 21 C -0.159 4.159 22 C 0.068 3.932 23 N -0.879 5.879 24 H 0.278 0.722 25 H 0.094 0.906 26 H 0.387 0.613 27 H 0.083 0.917 28 H 0.107 0.893 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.057 0.943 32 H 0.090 0.910 33 H 0.079 0.921 34 H 0.064 0.936 35 H 0.122 0.878 36 H 0.111 0.889 37 H 0.390 0.610 38 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.524 -8.949 6.433 11.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C -0.178 4.178 3 Si 0.794 3.206 4 H -0.184 1.184 5 H -0.201 1.201 6 H -0.191 1.191 7 C -0.525 4.525 8 H 0.091 0.909 9 C 0.054 3.946 10 C -0.249 4.249 11 C 0.076 3.924 12 N -0.356 5.356 13 C 0.003 3.997 14 C -0.206 4.206 15 C -0.180 4.180 16 H 0.125 0.875 17 C -0.122 4.122 18 C -0.155 4.155 19 C -0.134 4.134 20 C -0.278 4.278 21 C -0.183 4.183 22 C -0.034 4.034 23 N -0.423 5.423 24 H 0.088 0.912 25 H 0.112 0.888 26 H 0.221 0.779 27 H 0.102 0.898 28 H 0.125 0.875 29 H 0.102 0.898 30 H 0.102 0.898 31 H 0.076 0.924 32 H 0.109 0.891 33 H 0.097 0.903 34 H 0.083 0.917 35 H 0.140 0.860 36 H 0.129 0.871 37 H 0.218 0.782 38 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -4.794 -8.950 6.418 12.011 hybrid contribution 0.405 1.601 -0.386 1.696 sum -4.389 -7.349 6.032 10.471 Atomic orbital electron populations 1.69963 1.08692 1.29644 1.38155 1.26547 0.95355 1.03839 0.92096 0.85411 0.78715 0.76728 0.79704 1.18439 1.20063 1.19057 1.19367 0.97036 0.92227 1.43823 0.90856 1.17344 0.93606 0.91675 0.91981 1.20441 1.02501 0.95210 1.06795 1.17557 0.88220 0.93739 0.92868 1.43658 1.30397 1.06145 1.55385 1.21496 0.86559 0.87878 1.03757 1.23599 0.99456 1.02868 0.94718 1.23732 1.01358 1.01366 0.91538 0.87512 1.21954 0.95846 0.95793 0.98655 1.22579 0.95611 1.02160 0.95171 1.22162 0.99123 0.95043 0.97042 1.20311 1.02403 0.95663 1.09384 1.20122 0.98658 0.95424 1.04088 1.18047 0.93163 0.93774 0.98397 1.41673 1.32966 1.09315 1.58362 0.91150 0.88817 0.77937 0.89848 0.87470 0.89822 0.89827 0.92400 0.89134 0.90283 0.91746 0.86044 0.87065 0.78200 0.78290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -45.94 10.96 21.82 0.24 -45.70 16 2 C 0.03 1.77 5.16 85.23 0.44 2.21 16 3 Si 0.97 39.99 29.59 68.60 2.03 42.02 16 4 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 5 H -0.28 -10.95 7.11 99.48 0.71 -10.25 16 6 H -0.27 -10.76 7.11 99.48 0.71 -10.06 16 7 C -0.49 -26.93 8.45 23.35 0.20 -26.74 16 8 H 0.07 3.79 6.78 -2.91 -0.02 3.77 16 9 C 0.06 3.27 5.57 -21.18 -0.12 3.15 16 10 C -0.22 -12.29 8.49 22.81 0.19 -12.10 16 11 C 0.18 8.44 6.46 38.13 0.25 8.69 16 12 N -0.73 -29.25 5.84 -296.17 -1.73 -30.98 16 13 C 0.09 2.93 2.76 4.33 0.01 2.94 16 14 C -0.17 -4.63 10.06 30.59 0.31 -4.32 16 15 C -0.16 -4.02 6.94 -10.07 -0.07 -4.09 16 16 H 0.11 2.62 8.14 -2.38 -0.02 2.60 16 17 C -0.09 -1.63 6.63 31.67 0.21 -1.42 16 18 C -0.12 -2.55 6.88 31.69 0.22 -2.33 16 19 C -0.10 -2.71 4.44 31.47 0.14 -2.57 16 20 C -0.25 -11.44 8.00 22.56 0.18 -11.26 16 21 C -0.16 -7.19 9.87 22.35 0.22 -6.97 16 22 C 0.07 3.35 6.79 38.97 0.26 3.62 16 23 N -0.88 -36.01 8.97 -50.31 -0.45 -36.46 16 24 H 0.28 14.10 8.30 -92.71 -0.77 13.33 16 25 H 0.09 5.42 6.22 -2.91 -0.02 5.40 16 26 H 0.39 15.43 8.83 -92.71 -0.82 14.61 16 27 H 0.08 2.50 8.14 -2.39 -0.02 2.49 16 28 H 0.11 2.55 8.14 -2.39 -0.02 2.53 16 29 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 31 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.09 1.55 8.14 -2.38 -0.02 1.53 16 33 H 0.08 2.02 7.90 -2.39 -0.02 2.00 16 34 H 0.06 2.19 6.18 -2.39 -0.01 2.18 16 35 H 0.12 4.81 4.73 -2.91 -0.01 4.80 16 36 H 0.11 4.33 8.06 -2.91 -0.02 4.31 16 37 H 0.39 13.14 8.84 -92.70 -0.82 12.32 16 38 H 0.39 15.86 7.11 -92.71 -0.66 15.20 16 Total: -1.00 -62.42 303.12 1.34 -61.08 By element: Atomic # 1 Polarization: 62.41 SS G_CDS: -1.19 Total: 61.22 kcal Atomic # 6 Polarization: -53.63 SS G_CDS: 2.44 Total: -51.19 kcal Atomic # 7 Polarization: -111.20 SS G_CDS: -1.94 Total: -113.14 kcal Atomic # 14 Polarization: 39.99 SS G_CDS: 2.03 Total: 42.02 kcal Total: -62.42 1.34 -61.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693206132.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.328 kcal (2) G-P(sol) polarization free energy of solvation -62.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds