Wall clock time and date at job start Mon Mar 30 2020 07:25:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46908 * 111.00230 * 2 1 4 4 C 1.50695 * 109.46779 * 66.04473 * 3 2 1 5 5 C 1.38629 * 119.75181 * 269.72629 * 4 3 2 6 6 C 1.37627 * 120.24776 * 179.72154 * 5 4 3 7 7 C 1.40715 * 119.74261 * 0.57802 * 6 5 4 8 8 C 1.41397 * 120.24270 * 179.67826 * 7 6 5 9 9 H 1.07997 * 119.99689 * 155.30771 * 8 7 6 10 10 C 1.39941 * 120.00003 * 335.31387 * 8 7 6 11 11 N 1.30821 * 120.00050 * 342.22763 * 10 8 7 12 12 Si 1.86797 * 120.00166 * 162.23288 * 10 8 7 13 13 H 1.48500 * 109.47559 * 94.65963 * 12 10 8 14 14 H 1.48504 * 109.47284 * 214.66241 * 12 10 8 15 15 H 1.48502 * 109.47104 * 334.66034 * 12 10 8 16 16 C 1.40713 * 119.51305 * 359.69786 * 7 6 5 17 17 C 1.37614 * 119.74305 * 0.02562 * 16 7 6 18 18 C 1.46901 * 111.00033 * 236.04718 * 2 1 3 19 19 C 1.53004 * 109.46742 * 63.95356 * 18 2 1 20 20 C 1.53003 * 109.47509 * 183.95114 * 18 2 1 21 21 C 1.47202 * 109.47037 * 303.95329 * 18 2 1 22 22 N 3.39320 * 82.47941 * 198.72562 * 2 1 3 23 23 H 1.08997 * 109.47030 * 183.95185 * 1 2 3 24 24 H 1.08998 * 109.47108 * 303.95362 * 1 2 3 25 25 H 1.09004 * 109.47277 * 63.94951 * 1 2 3 26 26 H 1.08994 * 109.47066 * 186.05136 * 3 2 1 27 27 H 1.09005 * 109.46617 * 306.04871 * 3 2 1 28 28 H 1.07998 * 119.87965 * 359.97438 * 5 4 3 29 29 H 1.07997 * 120.12933 * 180.27950 * 6 5 4 30 30 H 0.97001 * 120.00193 * 180.02562 * 11 10 8 31 31 H 1.07993 * 120.12802 * 179.97438 * 16 7 6 32 32 H 1.08001 * 119.87561 * 179.97438 * 17 16 7 33 33 H 1.08995 * 109.47501 * 60.00594 * 19 18 2 34 34 H 1.09004 * 109.46545 * 180.02562 * 19 18 2 35 35 H 1.08997 * 109.47185 * 299.99331 * 19 18 2 36 36 H 1.09000 * 109.46660 * 59.99911 * 20 18 2 37 37 H 1.08996 * 109.47150 * 180.02562 * 20 18 2 38 38 H 1.09004 * 109.46849 * 300.00370 * 20 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6370 2.0471 1.2984 5 6 0.4491 2.7545 1.4007 6 6 0.1089 3.3707 2.5834 7 6 0.9777 3.2907 3.6874 8 6 0.6418 3.9255 4.9054 9 1 1.0571 3.5647 5.8348 10 6 -0.2289 5.0210 4.9066 11 7 -0.4584 5.6754 3.7973 12 14 -1.0635 5.5491 6.4922 13 1 -0.2667 6.6237 7.1369 14 1 -2.4257 6.0569 6.1893 15 1 -1.1615 4.3866 7.4110 16 6 2.1834 2.5748 3.5702 17 6 2.5004 1.9618 2.3797 18 6 1.9954 -0.7660 -1.1376 19 6 1.5868 -0.0835 -2.4447 20 6 3.5217 -0.8264 -1.0493 21 6 1.4476 -2.1319 -1.1050 22 7 1.0249 -3.1859 -1.0800 23 1 -0.3633 -1.0252 0.0708 24 1 -0.3633 0.5740 0.8524 25 1 -0.3634 0.4513 -0.9233 26 1 3.0797 1.3444 -0.1083 27 1 1.5611 1.9274 -0.8309 28 1 -0.2136 2.8190 0.5505 29 1 -0.8191 3.9175 2.6623 30 1 -1.0616 6.4351 3.7982 31 1 2.8577 2.5074 4.4111 32 1 3.4255 1.4121 2.2873 33 1 1.9925 0.9278 -2.4688 34 1 1.9771 -0.6522 -3.2888 35 1 0.4995 -0.0406 -2.5076 36 1 3.8128 -1.3124 -0.1181 37 1 3.9123 -1.3943 -1.8937 38 1 3.9273 0.1851 -1.0734 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693975783.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:55 Heat of formation + Delta-G solvation = 50.416063 kcal Electronic energy + Delta-G solvation = -18706.025525 eV Core-core repulsion = 15934.305721 eV Total energy + Delta-G solvation = -2771.719804 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.45661 -37.45418 -35.79526 -33.85327 -32.17184 -30.13550 -29.33587 -27.87369 -27.03370 -25.00727 -23.97163 -21.61090 -20.90804 -19.55318 -17.33937 -17.21105 -15.84356 -15.32303 -14.91699 -14.55207 -14.12476 -13.99909 -13.75339 -13.37423 -13.17504 -12.69794 -12.54184 -12.35774 -12.23964 -12.06924 -11.95985 -11.66341 -11.57844 -11.29366 -11.25807 -11.17385 -10.97263 -10.78835 -10.54811 -10.38690 -9.59508 -9.40027 -9.13367 -8.14952 -7.44435 -7.31066 -6.78494 -4.36374 2.56195 2.77891 2.81028 3.05573 3.07492 3.10386 3.18610 3.81304 3.91816 4.18973 4.64251 4.73289 4.85371 5.29524 5.37218 5.45796 5.60908 5.65699 5.69155 5.72789 5.75904 5.90416 5.95356 6.11275 6.25078 6.33999 6.35809 6.39318 6.93047 7.05586 7.13676 7.19363 7.30973 7.36754 7.56886 7.60591 7.86660 8.04590 8.11421 8.29429 8.62784 8.88561 8.96519 10.16028 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.040479 B = 0.004241 C = 0.004194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.554148 B = 6600.129651 C = 6674.702586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.519 5.519 3 C 0.117 3.883 4 C -0.211 4.211 5 C -0.093 4.093 6 C -0.167 4.167 7 C 0.114 3.886 8 C -0.463 4.463 9 H 0.077 0.923 10 C 0.077 3.923 11 N -0.793 5.793 12 Si 0.905 3.095 13 H -0.271 1.271 14 H -0.276 1.276 15 H -0.260 1.260 16 C -0.229 4.229 17 C -0.067 4.067 18 C 0.199 3.801 19 C -0.181 4.181 20 C -0.140 4.140 21 C 0.231 3.769 22 N -0.438 5.438 23 H 0.055 0.945 24 H 0.091 0.909 25 H 0.028 0.972 26 H 0.075 0.925 27 H 0.033 0.967 28 H 0.083 0.917 29 H 0.116 0.884 30 H 0.280 0.720 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.081 0.919 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.073 0.927 37 H 0.064 0.936 38 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.441 -4.707 -9.004 10.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.244 5.244 3 C -0.009 4.009 4 C -0.213 4.213 5 C -0.112 4.112 6 C -0.186 4.186 7 C 0.111 3.889 8 C -0.492 4.492 9 H 0.095 0.905 10 C -0.141 4.141 11 N -0.418 5.418 12 Si 0.730 3.270 13 H -0.196 1.196 14 H -0.201 1.201 15 H -0.184 1.184 16 C -0.248 4.248 17 C -0.086 4.086 18 C 0.106 3.894 19 C -0.240 4.240 20 C -0.198 4.198 21 C -0.088 4.088 22 N -0.114 5.114 23 H 0.073 0.927 24 H 0.109 0.891 25 H 0.046 0.954 26 H 0.093 0.907 27 H 0.051 0.949 28 H 0.102 0.898 29 H 0.134 0.866 30 H 0.091 0.909 31 H 0.109 0.891 32 H 0.106 0.894 33 H 0.100 0.900 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.092 0.908 37 H 0.083 0.917 38 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 2.835 -6.325 -8.628 11.068 hybrid contribution -0.637 1.150 0.009 1.314 sum 2.198 -5.175 -8.619 10.291 Atomic orbital electron populations 1.22529 0.87142 1.01564 1.01946 1.62486 1.08463 1.15663 1.37799 1.20910 0.99038 0.84965 0.95947 1.18757 0.99089 1.08455 0.94992 1.20514 0.95524 0.98294 0.96834 1.21275 1.00687 1.03345 0.93309 1.17624 0.89444 0.88966 0.92854 1.19614 1.23682 1.11459 0.94452 0.90486 1.25896 0.94994 0.95460 0.97717 1.69824 1.28563 1.15051 1.28376 0.86349 0.78982 0.79502 0.82207 1.19581 1.20053 1.18417 1.20969 0.98356 1.08465 0.97059 1.20323 0.97310 0.97836 0.93123 1.18592 0.95817 0.83028 0.92007 1.22493 1.02867 1.02168 0.96517 1.21933 0.90864 1.03875 1.03161 1.28937 0.92861 0.94481 0.92538 1.81156 1.09022 1.12599 1.08591 0.92663 0.89058 0.95360 0.90688 0.94853 0.89840 0.86640 0.90919 0.89134 0.89403 0.89971 0.91420 0.91524 0.90772 0.91661 0.90066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 8.59 60.06 0.52 0.75 16 2 N -0.52 -7.54 4.55 -231.86 -1.06 -8.59 16 3 C 0.12 1.77 4.21 -4.97 -0.02 1.75 16 4 C -0.21 -4.18 4.91 -104.33 -0.51 -4.70 16 5 C -0.09 -2.00 7.87 -39.66 -0.31 -2.31 16 6 C -0.17 -4.15 8.70 -38.87 -0.34 -4.49 16 7 C 0.11 2.95 5.57 -106.82 -0.60 2.35 16 8 C -0.46 -12.07 9.05 -37.74 -0.34 -12.41 16 9 H 0.08 1.94 7.91 -52.49 -0.41 1.53 16 10 C 0.08 1.90 5.14 -17.34 -0.09 1.81 16 11 N -0.79 -20.04 10.97 55.55 0.61 -19.43 16 12 Si 0.91 18.36 29.59 -169.99 -5.03 13.33 16 13 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 14 H -0.28 -5.47 7.11 56.52 0.40 -5.06 16 15 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 16 C -0.23 -5.45 9.80 -38.87 -0.38 -5.83 16 17 C -0.07 -1.42 9.67 -39.66 -0.38 -1.80 16 18 C 0.20 2.33 0.64 -134.38 -0.09 2.24 16 19 C -0.18 -1.73 7.74 37.16 0.29 -1.44 16 20 C -0.14 -1.36 8.22 37.16 0.31 -1.05 16 21 C 0.23 3.18 12.45 -20.76 -0.26 2.93 16 22 N -0.44 -6.94 18.54 42.15 0.78 -6.16 16 23 H 0.05 0.82 6.99 -51.93 -0.36 0.46 16 24 H 0.09 1.56 5.90 -51.93 -0.31 1.25 16 25 H 0.03 0.37 6.40 -51.93 -0.33 0.04 16 26 H 0.07 1.01 5.77 -51.93 -0.30 0.71 16 27 H 0.03 0.47 6.80 -51.93 -0.35 0.12 16 28 H 0.08 1.63 7.99 -52.49 -0.42 1.21 16 29 H 0.12 3.00 6.18 -52.49 -0.32 2.68 16 30 H 0.28 6.44 8.30 -40.82 -0.34 6.10 16 31 H 0.09 2.06 8.06 -52.49 -0.42 1.63 16 32 H 0.09 1.64 8.06 -52.49 -0.42 1.22 16 33 H 0.08 0.73 6.64 -51.93 -0.34 0.38 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.67 6.49 -51.93 -0.34 0.33 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.08 0.71 6.20 -51.93 -0.32 0.39 16 LS Contribution 309.63 15.07 4.67 4.67 Total: -1.00 -27.41 309.63 -7.30 -34.71 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -5.06 Total: 3.67 kcal Atomic # 6 Polarization: -19.99 SS G_CDS: -2.21 Total: -22.20 kcal Atomic # 7 Polarization: -34.52 SS G_CDS: 0.34 Total: -34.18 kcal Atomic # 14 Polarization: 18.36 SS G_CDS: -5.03 Total: 13.33 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -27.41 -7.30 -34.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693975783.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.130 kcal (2) G-P(sol) polarization free energy of solvation -27.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds