Wall clock time and date at job start Mon Mar 30 2020 07:25:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46908 * 111.00230 * 2 1 4 4 C 1.50695 * 109.46779 * 66.04473 * 3 2 1 5 5 C 1.38629 * 119.75181 * 269.72629 * 4 3 2 6 6 C 1.37627 * 120.24776 * 179.72154 * 5 4 3 7 7 C 1.40715 * 119.74261 * 0.57802 * 6 5 4 8 8 C 1.41397 * 120.24270 * 179.67826 * 7 6 5 9 9 H 1.07997 * 119.99689 * 155.30771 * 8 7 6 10 10 C 1.39941 * 120.00003 * 335.31387 * 8 7 6 11 11 N 1.30821 * 120.00050 * 342.22763 * 10 8 7 12 12 Si 1.86797 * 120.00166 * 162.23288 * 10 8 7 13 13 H 1.48500 * 109.47559 * 94.65963 * 12 10 8 14 14 H 1.48504 * 109.47284 * 214.66241 * 12 10 8 15 15 H 1.48502 * 109.47104 * 334.66034 * 12 10 8 16 16 C 1.40713 * 119.51305 * 359.69786 * 7 6 5 17 17 C 1.37614 * 119.74305 * 0.02562 * 16 7 6 18 18 C 1.46901 * 111.00033 * 236.04718 * 2 1 3 19 19 C 1.53004 * 109.46742 * 63.95356 * 18 2 1 20 20 C 1.53003 * 109.47509 * 183.95114 * 18 2 1 21 21 C 1.47202 * 109.47037 * 303.95329 * 18 2 1 22 22 N 3.39320 * 82.47941 * 198.72562 * 2 1 3 23 23 H 1.08997 * 109.47030 * 183.95185 * 1 2 3 24 24 H 1.08998 * 109.47108 * 303.95362 * 1 2 3 25 25 H 1.09004 * 109.47277 * 63.94951 * 1 2 3 26 26 H 1.08994 * 109.47066 * 186.05136 * 3 2 1 27 27 H 1.09005 * 109.46617 * 306.04871 * 3 2 1 28 28 H 1.07998 * 119.87965 * 359.97438 * 5 4 3 29 29 H 1.07997 * 120.12933 * 180.27950 * 6 5 4 30 30 H 0.97001 * 120.00193 * 180.02562 * 11 10 8 31 31 H 1.07993 * 120.12802 * 179.97438 * 16 7 6 32 32 H 1.08001 * 119.87561 * 179.97438 * 17 16 7 33 33 H 1.08995 * 109.47501 * 60.00594 * 19 18 2 34 34 H 1.09004 * 109.46545 * 180.02562 * 19 18 2 35 35 H 1.08997 * 109.47185 * 299.99331 * 19 18 2 36 36 H 1.09000 * 109.46660 * 59.99911 * 20 18 2 37 37 H 1.08996 * 109.47150 * 180.02562 * 20 18 2 38 38 H 1.09004 * 109.46849 * 300.00370 * 20 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6370 2.0471 1.2984 5 6 0.4491 2.7545 1.4007 6 6 0.1089 3.3707 2.5834 7 6 0.9777 3.2907 3.6874 8 6 0.6418 3.9255 4.9054 9 1 1.0571 3.5647 5.8348 10 6 -0.2289 5.0210 4.9066 11 7 -0.4584 5.6754 3.7973 12 14 -1.0635 5.5491 6.4922 13 1 -0.2667 6.6237 7.1369 14 1 -2.4257 6.0569 6.1893 15 1 -1.1615 4.3866 7.4110 16 6 2.1834 2.5748 3.5702 17 6 2.5004 1.9618 2.3797 18 6 1.9954 -0.7660 -1.1376 19 6 1.5868 -0.0835 -2.4447 20 6 3.5217 -0.8264 -1.0493 21 6 1.4476 -2.1319 -1.1050 22 7 1.0249 -3.1859 -1.0800 23 1 -0.3633 -1.0252 0.0708 24 1 -0.3633 0.5740 0.8524 25 1 -0.3634 0.4513 -0.9233 26 1 3.0797 1.3444 -0.1083 27 1 1.5611 1.9274 -0.8309 28 1 -0.2136 2.8190 0.5505 29 1 -0.8191 3.9175 2.6623 30 1 -1.0616 6.4351 3.7982 31 1 2.8577 2.5074 4.4111 32 1 3.4255 1.4121 2.2873 33 1 1.9925 0.9278 -2.4688 34 1 1.9771 -0.6522 -3.2888 35 1 0.4995 -0.0406 -2.5076 36 1 3.8128 -1.3124 -0.1181 37 1 3.9123 -1.3943 -1.8937 38 1 3.9273 0.1851 -1.0734 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693975783.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:54 Heat of formation + Delta-G solvation = 35.187115 kcal Electronic energy + Delta-G solvation = -18706.685902 eV Core-core repulsion = 15934.305721 eV Total energy + Delta-G solvation = -2772.380181 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.59654 -39.08403 -37.01624 -35.56637 -33.39509 -31.64350 -31.10558 -29.08988 -28.10954 -26.42991 -25.18202 -23.04182 -22.64695 -21.08663 -19.16297 -18.28700 -17.11742 -16.82220 -16.12839 -15.93622 -15.61146 -15.35739 -14.88888 -14.71742 -14.50152 -14.16862 -13.84677 -13.71752 -13.42195 -13.25785 -13.20291 -12.92682 -12.83022 -12.68038 -12.55104 -12.37921 -12.32622 -12.09540 -12.03245 -11.90354 -11.28965 -11.17140 -10.93424 -9.34477 -9.18898 -9.07304 -8.60045 -6.27977 0.98092 1.24901 1.38722 1.46220 1.53015 1.66962 1.72383 2.22552 2.69954 2.85292 3.18886 3.84972 3.91052 4.00895 4.20277 4.36082 4.50947 4.53791 4.69034 4.72578 4.76729 4.80302 4.87004 4.90638 5.02873 5.08922 5.12858 5.21120 5.27269 5.39231 5.45869 5.55680 5.78564 5.99908 6.01241 6.15477 6.19479 6.36573 6.48046 6.51350 6.78277 7.00852 7.11919 8.36749 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.040479 B = 0.004241 C = 0.004194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.554148 B = 6600.129651 C = 6674.702586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.534 5.534 3 C 0.122 3.878 4 C -0.192 4.192 5 C -0.092 4.092 6 C -0.193 4.193 7 C 0.079 3.921 8 C -0.506 4.506 9 H 0.069 0.931 10 C 0.038 3.962 11 N -0.826 5.826 12 Si 0.976 3.024 13 H -0.262 1.262 14 H -0.266 1.266 15 H -0.262 1.262 16 C -0.248 4.248 17 C -0.071 4.071 18 C 0.200 3.800 19 C -0.178 4.178 20 C -0.140 4.140 21 C 0.246 3.754 22 N -0.479 5.479 23 H 0.049 0.951 24 H 0.064 0.936 25 H 0.048 0.952 26 H 0.102 0.898 27 H 0.052 0.948 28 H 0.105 0.895 29 H 0.095 0.905 30 H 0.286 0.714 31 H 0.090 0.910 32 H 0.119 0.881 33 H 0.096 0.904 34 H 0.087 0.913 35 H 0.060 0.940 36 H 0.062 0.938 37 H 0.087 0.913 38 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.465 -5.077 -10.906 12.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.259 5.259 3 C -0.003 4.003 4 C -0.193 4.193 5 C -0.111 4.111 6 C -0.212 4.212 7 C 0.077 3.923 8 C -0.536 4.536 9 H 0.088 0.912 10 C -0.176 4.176 11 N -0.452 5.452 12 Si 0.797 3.203 13 H -0.187 1.187 14 H -0.190 1.190 15 H -0.186 1.186 16 C -0.267 4.267 17 C -0.089 4.089 18 C 0.108 3.892 19 C -0.238 4.238 20 C -0.198 4.198 21 C -0.072 4.072 22 N -0.156 5.156 23 H 0.068 0.932 24 H 0.083 0.917 25 H 0.066 0.934 26 H 0.120 0.880 27 H 0.070 0.930 28 H 0.123 0.877 29 H 0.113 0.887 30 H 0.097 0.903 31 H 0.108 0.892 32 H 0.137 0.863 33 H 0.114 0.886 34 H 0.106 0.894 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.106 0.894 38 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 3.871 -6.705 -10.545 13.082 hybrid contribution -0.873 1.130 0.443 1.495 sum 2.997 -5.575 -10.102 11.921 Atomic orbital electron populations 1.22426 0.87725 1.00922 1.01755 1.62289 1.08111 1.15405 1.40113 1.20885 1.00853 0.85093 0.93488 1.19272 0.97245 1.06167 0.96664 1.20774 0.96550 0.97483 0.96264 1.21238 1.00335 1.04915 0.94750 1.17951 0.90674 0.90249 0.93473 1.19824 1.26139 1.13160 0.94501 0.91242 1.26652 0.95000 0.94924 1.01061 1.69870 1.29374 1.15686 1.30258 0.85292 0.78153 0.78952 0.77914 1.18709 1.19026 1.18626 1.21176 0.97983 1.09076 0.98489 1.20691 0.98662 0.97238 0.92333 1.18835 0.96925 0.81396 0.92069 1.22504 1.02693 1.02913 0.95641 1.21998 0.88972 1.05164 1.03672 1.29395 0.91791 0.94684 0.91301 1.81177 1.10394 1.14071 1.09921 0.93227 0.91708 0.93394 0.88026 0.92971 0.87710 0.88723 0.90299 0.89178 0.86319 0.88554 0.89411 0.92101 0.91854 0.89435 0.88496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.55 8.59 127.69 1.10 1.65 16 2 N -0.53 -13.80 4.55 -887.48 -4.04 -17.84 16 3 C 0.12 3.20 4.21 85.55 0.36 3.56 16 4 C -0.19 -7.20 4.91 -19.68 -0.10 -7.29 16 5 C -0.09 -3.92 7.87 22.22 0.17 -3.74 16 6 C -0.19 -9.91 8.70 22.73 0.20 -9.72 16 7 C 0.08 4.24 5.57 -21.29 -0.12 4.13 16 8 C -0.51 -27.75 9.05 23.46 0.21 -27.54 16 9 H 0.07 3.72 7.91 -2.91 -0.02 3.70 16 10 C 0.04 1.94 5.14 85.26 0.44 2.38 16 11 N -0.83 -43.22 10.97 21.83 0.24 -42.98 16 12 Si 0.98 38.68 29.59 68.60 2.03 40.71 16 13 H -0.26 -9.96 7.11 99.48 0.71 -9.26 16 14 H -0.27 -10.00 7.11 99.48 0.71 -9.29 16 15 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 16 C -0.25 -11.99 9.80 22.73 0.22 -11.77 16 17 C -0.07 -2.88 9.67 22.22 0.21 -2.66 16 18 C 0.20 3.95 0.64 1.72 0.00 3.95 16 19 C -0.18 -2.59 7.74 71.98 0.56 -2.04 16 20 C -0.14 -2.10 8.22 71.98 0.59 -1.51 16 21 C 0.25 6.22 12.45 89.44 1.11 7.34 16 22 N -0.48 -14.53 18.54 20.01 0.37 -14.16 16 23 H 0.05 1.41 6.99 -2.39 -0.02 1.40 16 24 H 0.06 2.14 5.90 -2.39 -0.01 2.13 16 25 H 0.05 1.13 6.40 -2.38 -0.02 1.11 16 26 H 0.10 2.19 5.77 -2.39 -0.01 2.18 16 27 H 0.05 1.22 6.80 -2.38 -0.02 1.20 16 28 H 0.10 3.93 7.99 -2.91 -0.02 3.91 16 29 H 0.09 5.17 6.18 -2.91 -0.02 5.16 16 30 H 0.29 13.54 8.30 -92.71 -0.77 12.77 16 31 H 0.09 4.21 8.06 -2.91 -0.02 4.19 16 32 H 0.12 4.06 8.06 -2.91 -0.02 4.04 16 33 H 0.10 1.18 6.64 -2.39 -0.02 1.16 16 34 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.06 0.98 6.49 -2.39 -0.02 0.97 16 36 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.10 1.17 6.20 -2.38 -0.01 1.16 16 Total: -1.00 -62.28 309.63 4.63 -57.65 By element: Atomic # 1 Polarization: 18.81 SS G_CDS: 1.06 Total: 19.87 kcal Atomic # 6 Polarization: -48.23 SS G_CDS: 4.97 Total: -43.26 kcal Atomic # 7 Polarization: -71.55 SS G_CDS: -3.43 Total: -74.98 kcal Atomic # 14 Polarization: 38.68 SS G_CDS: 2.03 Total: 40.71 kcal Total: -62.28 4.63 -57.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693975783.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.838 kcal (2) G-P(sol) polarization free energy of solvation -62.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.650 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds